Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 0.0e+00 1158.3 615 100.0
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 2.9e-218 762.3 524 78.6
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 9.5e-214 747.3 523 78.2
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 8.1e-213 744.2 519 78.2
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 1.2e-208 730.3 448 87.3
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 1.5e-203 713.4 528 73.9
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 1.9e-201 706.4 455 81.8
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 2.1e-200 703.0 452 82.5
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 2.3e-199 699.5 465 80.0
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 3.0e-199 699.1 484 77.5
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 3.9e-199 698.7 463 79.3
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 6.6e-199 698.0 465 80.2
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 6.6e-199 698.0 478 77.8
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 1.1e-198 697.2 463 79.9
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 1.9e-198 696.4 464 78.9
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 1.9e-198 696.4 449 81.5
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 1.9e-198 696.4 449 81.5
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.2e-197 693.7 451 81.6
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 1.6e-197 693.3 462 78.6
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 8.1e-197 691.0 463 78.8
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 1.4e-196 690.3 467 78.6
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.4e-196 690.3 490 75.9
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 2.4e-196 689.5 463 78.6
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 2.6e-195 686.0 452 80.5
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 2.6e-195 686.0 450 82.2
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 3.4e-195 685.6 544 69.7
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 3.4e-195 685.6 462 79.2
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 2.2e-194 682.9 431 83.1
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 6.4e-194 681.4 482 75.7
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 6.4e-194 681.4 450 80.7
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 8.4e-194 681.0 522 72.4
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 1.9e-193 679.9 463 77.8
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 3.2e-193 679.1 492 73.2
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 3.2e-193 679.1 478 77.0
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.2e-192 677.2 452 81.4
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.2e-192 677.2 427 83.6
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 6.0e-192 674.9 465 77.0
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 1.0e-191 674.1 445 80.0
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 1.0e-191 674.1 452 79.2
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 1.3e-191 673.7 515 71.5
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 1.3e-191 673.7 538 70.1
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 1.7e-191 673.3 458 77.5
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 2.3e-191 672.9 515 70.7
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 3.0e-191 672.5 517 71.6
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 3.9e-191 672.2 461 79.0
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 5.1e-191 671.8 452 81.0
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 6.6e-191 671.4 515 71.7
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 8.7e-191 671.0 510 72.2
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 1.5e-190 670.2 517 71.6
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 1.5e-190 670.2 430 82.8
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.5e-190 670.2 452 81.4
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 2.5e-190 669.5 453 79.5
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 2.5e-190 669.5 441 78.7
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 3.3e-190 669.1 452 81.2
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.3e-190 669.1 452 81.2
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 3.3e-190 669.1 487 73.3
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 3.3e-190 669.1 515 71.1
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.6e-189 666.8 452 77.7
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 2.8e-189 666.0 519 70.5
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 2.8e-189 666.0 468 76.1
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 2.8e-189 666.0 452 79.9
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 3.6e-189 665.6 441 79.8
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 4.8e-189 665.2 463 75.8
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 8.1e-189 664.5 530 69.4
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 1.1e-188 664.1 516 71.3
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 3.1e-188 662.5 430 80.2
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 4.0e-188 662.1 548 66.4
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 4.0e-188 662.1 434 79.0
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 5.3e-188 661.8 493 72.0
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 5.3e-188 661.8 411 84.2
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 1.5e-187 660.2 446 78.3
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 4.5e-187 658.7 513 70.2
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 4.5e-187 658.7 468 75.9
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 4.5e-187 658.7 427 82.2
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 4.5e-187 658.7 510 70.0
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 7.6e-187 657.9 478 74.9
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 1.7e-186 656.8 487 71.3
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 2.2e-186 656.4 524 69.3
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 2.9e-186 656.0 453 77.5
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 1.1e-185 654.1 493 71.4
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 2.4e-185 652.9 480 72.5
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 3.2e-185 652.5 503 71.2
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 7.1e-185 651.4 503 70.2
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 7.1e-185 651.4 503 70.2
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 7.9e-184 647.9 487 72.3
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.0e-183 647.5 497 70.8
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.3e-183 647.1 477 71.9
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 3.0e-183 646.0 521 67.8
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 3.9e-183 645.6 439 78.1
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 5.1e-183 645.2 515 69.5
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 6.7e-183 644.8 439 76.3
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 3.3e-182 642.5 431 79.4
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.6e-181 640.2 403 81.9
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 2.8e-181 639.4 404 80.9
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 2.8e-181 639.4 463 73.9
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 1.4e-177 627.1 491 70.7
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 1.4e-177 627.1 440 75.7
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 4.2e-177 625.5 429 75.1
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.2e-176 624.0 470 70.2
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 3.5e-176 622.5 431 77.3
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.0e-175 620.9 440 75.0
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.3e-175 620.5 491 67.4
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 3.3e-174 615.9 441 73.5
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 4.8e-173 612.1 430 75.1
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 1.1e-172 610.9 440 74.1
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 1.0e-170 604.4 528 65.0
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 2.2e-170 603.2 497 64.6
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 1.4e-169 600.5 437 73.2
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 5.5e-169 598.6 422 72.3
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 7.1e-169 598.2 455 71.9
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 2.5e-166 589.7 463 69.8
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 1.5e-163 580.5 416 76.2
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 7.9e-160 568.2 453 71.7
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 2.3e-151 540.0 450 65.3
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 2.3e-151 540.0 450 65.3
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 2.4e-140 503.4 415 62.2
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 5.3e-140 502.3 516 54.1
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 2.2e-138 496.9 439 59.9
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.3e-133 481.1 374 72.2
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 1.0e-122 444.9 325 71.4
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 9.5e-121 438.3 365 63.0
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 2.8e-120 436.8 384 63.3
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 1.5e-105 387.9 228 89.5
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 3.0e-98 363.6 418 49.3
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 2.2e-93 347.4 426 49.1
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 5.4e-84 316.2 225 75.6
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.0e-78 297.7 302 60.3
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 2.7e-75 287.3 413 41.6
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 7.3e-73 279.3 241 70.1
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 4.6e-67 260.0 173 82.7
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 3.0e-66 257.3 389 37.5
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 9.0e-63 245.7 301 48.2
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 5.1e-58 229.9 442 31.9
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 4.8e-56 223.4 389 35.7
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 6.9e-55 219.5 160 71.9
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 5.5e-52 209.9 451 36.4
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 4.8e-48 196.8 254 48.0
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 1.5e-41 175.3 138 68.8
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.8e-39 168.3 125 62.4
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 3.8e-29 134.0 123 61.8
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 7.2e-28 129.8 102 67.6
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 9.7e-25 119.4 86 69.8
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 8.2e-24 116.3 97 70.1
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 5.3e-23 113.6 101 61.4
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 1.5e-20 105.5 386 26.2
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 9.4e-12 76.3 68 67.6
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 4.7e-11 73.9 357 26.6
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 3.4e-09 67.8 421 24.5


User provided reference genes

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