Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 2.6e-67 258.8 154 100.0
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 1.8e-57 226.1 148 90.5
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 1.1e-46 190.3 155 67.1
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 1.6e-45 186.4 153 68.0
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 4.3e-38 161.8 167 55.1
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 2.3e-36 156.0 160 58.1
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 1.3e-34 150.2 162 57.4
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 1.7e-34 149.8 160 55.6
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 1.7e-34 149.8 160 55.6
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 2.2e-34 149.4 160 55.6
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 3.7e-34 148.7 161 55.3
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 8.4e-34 147.5 160 55.0
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 1.9e-33 146.4 157 54.1
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 2.4e-33 146.0 160 53.8
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 1.6e-32 143.3 155 57.4
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 1.6e-32 143.3 155 57.4
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 2.7e-32 142.5 159 54.1
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 7.8e-32 141.0 162 54.3
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 1.0e-31 140.6 148 54.1
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 1.0e-31 140.6 159 51.6
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 2.3e-31 139.4 154 49.4
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 3.9e-31 138.7 159 53.5
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 1.9e-30 136.3 162 51.2
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 1.2e-29 133.7 152 53.9
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 4.7e-29 131.7 159 51.6
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 6.2e-29 131.3 161 51.6
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 8.1e-29 131.0 137 50.4
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 8.1e-29 131.0 138 54.3
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.1e-28 130.6 161 51.6
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 1.1e-28 130.6 144 53.5
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 4.0e-28 128.6 161 50.3
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 5.8e-27 124.8 133 49.6
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 1.3e-26 123.6 158 48.7
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 1.3e-26 123.6 161 49.1
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 2.2e-26 122.9 161 48.4
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 6.4e-26 121.3 161 46.0
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 8.4e-26 120.9 160 45.6
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 4.2e-25 118.6 130 48.5
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 4.2e-25 118.6 139 51.1
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 5.4e-25 118.2 160 48.1
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 9.3e-25 117.5 199 41.2
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 1.2e-24 117.1 161 48.4
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 2.7e-24 115.9 160 46.2
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 3.5e-24 115.5 160 46.2
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 6.0e-24 114.8 158 43.7
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 6.0e-24 114.8 158 43.7
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 6.0e-24 114.8 163 45.4
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 6.0e-24 114.8 163 45.4
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 7.8e-24 114.4 161 45.3
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 7.8e-24 114.4 158 43.7
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 7.8e-24 114.4 158 43.7
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 7.8e-24 114.4 191 42.4
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 1.3e-23 113.6 131 50.4
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 2.3e-23 112.8 158 43.0
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 3.0e-23 112.5 158 42.4
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 3.0e-23 112.5 163 47.9
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 3.0e-23 112.5 154 47.4
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 8.7e-23 110.9 146 47.3
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 8.7e-23 110.9 132 52.3
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.1e-22 110.5 167 45.5
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.5e-22 110.2 168 45.2
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 1.9e-22 109.8 159 45.9
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 1.9e-22 109.8 130 48.5
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 7.3e-22 107.8 168 43.5
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 7.3e-22 107.8 158 42.4
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 1.3e-21 107.1 158 42.4
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 1.6e-21 106.7 166 43.4
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 1.6e-21 106.7 155 43.9
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 1.6e-21 106.7 154 44.8
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 2.1e-21 106.3 160 46.2
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 2.8e-21 105.9 166 42.8
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 6.2e-21 104.8 126 46.8
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 6.2e-21 104.8 131 45.8
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 1.4e-20 103.6 132 44.7
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 2.4e-20 102.8 162 43.8
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 3.1e-20 102.4 106 55.7
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 3.1e-20 102.4 160 51.9
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 4.0e-20 102.1 160 43.1
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 5.3e-20 101.7 163 42.3
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 6.9e-20 101.3 154 43.5
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 5.8e-19 98.2 162 41.4
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 1.3e-18 97.1 162 46.3
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 1.7e-18 96.7 100 53.0
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 3.8e-18 95.5 138 45.7
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 6.4e-18 94.7 165 41.8
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 8.4e-18 94.4 145 46.2
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 8.4e-18 94.4 180 36.7
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 8.4e-18 94.4 105 50.5
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 2.4e-17 92.8 150 40.0
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 2.4e-17 92.8 109 50.5
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 4.2e-17 92.0 105 50.5
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 3.5e-16 89.0 102 52.9
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 3.5e-16 89.0 108 51.9
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 6.0e-16 88.2 157 37.6
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.0e-15 87.4 98 49.0
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 1.3e-15 87.0 109 45.0
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 1.3e-15 87.0 172 47.7
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.7e-15 86.7 137 42.3
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 2.3e-15 86.3 104 50.0
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 3.0e-15 85.9 108 47.2
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 3.0e-15 85.9 153 37.3
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 5.1e-15 85.1 163 48.5
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 5.1e-15 85.1 98 48.0
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 8.7e-15 84.3 131 38.9
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 3.3e-14 82.4 90 47.8
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 2.1e-13 79.7 100 47.0
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 2.8e-13 79.3 148 40.5
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 6.2e-13 78.2 108 48.1
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 5.3e-12 75.1 129 39.5
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 1.7e-10 70.1 55 54.5
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.7e-10 70.1 65 52.3
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 2.9e-10 69.3 63 54.0
Ah.01g018070 Amaranthus hybridus HOM05D007150 ORTHO05D008994 4.9e-10 68.6 66 59.1
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 4.9e-10 68.6 124 37.1
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 6.4e-10 68.2 164 34.8
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 1.1e-09 67.4 71 56.3
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 1.1e-09 67.4 106 47.2
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 1.9e-09 66.6 109 44.0
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 2.4e-09 66.2 86 50.0
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 4.2e-09 65.5 67 47.8
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 1.2e-08 63.9 107 44.9
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 2.7e-08 62.8 72 43.1
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 1.0e-07 60.8 107 43.9
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 1.8e-07 60.1 73 43.8
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 3.0e-07 59.3 98 41.8
ClCG01G025500 Citrullus lanatus HOM05D005827 ORTHO05D005864 5.1e-07 58.5 92 39.1
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 8.7e-07 57.8 95 43.2
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 1.1e-06 57.4 67 41.8
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 1.1e-06 57.4 107 43.0
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 3.3e-06 55.8 106 43.4
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 9.6e-06 54.3 69 43.5


User provided reference genes

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