Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G15994 Striga asiatica HOM05D003857 ORTHO05D004454 1.3e-49 199.5 106 100.0
SGA_v2.0_scaffold8G04405 Striga asiatica HOM05D003857 ORTHO05D004454 5.6e-29 131.0 107 70.1
MSTRG.13018 Avicennia marina HOM05D003857 ORTHO05D004454 2.9e-25 118.6 104 61.5
Migut.H01760 Erythranthe guttata HOM05D003857 ORTHO05D004454 9.5e-21 103.6 106 58.5
MSTRG.14482 Avicennia marina HOM05D003857 ORTHO05D004454 4.7e-20 101.3 112 53.6
Nitab4.5_0000461g0260 Nicotiana tabacum HOM05D003857 ORTHO05D004454 4.0e-19 98.2 84 60.7
Oeu014353.1 Olea europaea HOM05D003857 ORTHO05D004454 4.0e-19 98.2 85 62.4
SalBow8G3453 Salvia bowleyana HOM05D003857 ORTHO05D004454 5.2e-19 97.8 85 63.5
Nitab4.5_0006886g0010 Nicotiana tabacum HOM05D003857 ORTHO05D004454 2.0e-18 95.9 84 59.5
Cc05_g14870 Coffea canephora HOM05D003857 ORTHO05D004454 5.8e-18 94.4 102 56.9
Solyc07g065460.1 Solanum lycopersicum HOM05D003857 ORTHO05D004454 1.3e-17 93.2 107 51.4
PGSC0003DMG400022174 Solanum tuberosum HOM05D003857 ORTHO05D004454 1.3e-17 93.2 106 51.9
Sopen07g033670 Solanum pennellii HOM05D003857 ORTHO05D004454 1.7e-17 92.8 107 51.4
Nn1g07497 Nelumbo nucifera HOM05D003857 ORTHO05D004454 6.4e-17 90.9 85 57.6
QL08p004432 Quercus lobata HOM05D003857 ORTHO05D004454 1.1e-16 90.1 96 57.3
QL08p004552 Quercus lobata HOM05D003857 ORTHO05D004454 1.1e-16 90.1 96 57.3
TAR629G0922 Trochodendron aralioides HOM05D003857 ORTHO05D004454 4.1e-16 88.2 89 53.9
EL10Ac4g07592 Beta vulgaris HOM05D003857 ORTHO05D004454 5.4e-16 87.8 87 55.2
MD11G1200800 Malus domestica HOM05D003857 ORTHO05D004454 5.4e-16 87.8 85 52.9
Atru.chr2.3676 Acer truncatum HOM05D003857 ORTHO05D004454 2.1e-15 85.9 93 49.5
AUR62036444 Chenopodium quinoa HOM05D003857 ORTHO05D004454 2.1e-15 85.9 85 52.9
MD03G1183900 Malus domestica HOM05D003857 ORTHO05D004454 2.1e-15 85.9 85 52.9
Thecc.07G015100 Theobroma cacao HOM05D003857 ORTHO05D004454 3.5e-15 85.1 86 55.8
Rhsim06G0228800 Rhododendron simsii HOM05D003857 ORTHO05D004454 4.6e-15 84.7 85 55.3
Oeu041436.1 Olea europaea HOM05D003857 ORTHO05D004454 1.0e-14 83.6 85 55.3
CAN.G337.6 Capsicum annuum HOM05D003857 ORTHO05D004454 1.3e-14 83.2 114 50.0
FvH4_3g29390 Fragaria vesca HOM05D003857 ORTHO05D004454 1.3e-14 83.2 85 54.1
FAN11G0618 Fragaria x ananassa HOM05D003857 ORTHO05D004454 1.3e-14 83.2 85 54.1
FAN25G1727 Fragaria x ananassa HOM05D003857 ORTHO05D004454 1.3e-14 83.2 85 54.1
Prupe.4G242100 Prunus persica HOM05D003857 ORTHO05D004454 1.7e-14 82.8 85 57.6
FAN21G0934 Fragaria x ananassa HOM05D003857 ORTHO05D004454 2.3e-14 82.4 85 54.1
HanXRQChr05g0161821 Helianthus annuus HOM05D003857 ORTHO05D004454 2.3e-14 82.4 85 54.1
Hma1.2p1_0889F.1_g232820 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 2.3e-14 82.4 84 59.5
TWI38G0553 Tripterygium wilfordii HOM05D003857 ORTHO05D004454 2.3e-14 82.4 86 51.2
FAN16G1576 Fragaria x ananassa HOM05D003857 ORTHO05D004454 3.9e-14 81.6 85 52.9
Manes.15G060900 Manihot esculenta HOM05D003857 ORTHO05D004454 5.1e-14 81.3 84 48.8
RcHm_v2.0_Chr5g0053811 Rosa chinensis HOM05D003857 ORTHO05D004454 6.6e-14 80.9 86 54.7
vmacro22708 Vaccinium macrocarpon HOM05D003857 ORTHO05D004454 6.6e-14 80.9 82 54.9
AUR62017087 Chenopodium quinoa HOM05D003857 ORTHO05D004454 1.9e-13 79.3 78 52.6
CiPaw.12G137500 Carya illinoinensis HOM05D003857 ORTHO05D004454 5.6e-13 77.8 86 51.2
Hund01891 Selenicereus undatus HOM05D003857 ORTHO05D004454 5.6e-13 77.8 84 51.2
Potri.001G366900 Populus trichocarpa HOM05D003857 ORTHO05D004454 7.3e-13 77.4 85 50.6
CANSAT11G1184 Cannabis sativa HOM05D003857 ORTHO05D004454 1.6e-12 76.3 85 55.3
Sc03g0011180 Simmondsia chinensis HOM05D003857 ORTHO05D004454 1.6e-12 76.3 83 51.8
Manes.03G140433 Manihot esculenta HOM05D003857 ORTHO05D004454 2.1e-12 75.9 109 43.1
Manes.03G140500 Manihot esculenta HOM05D003857 ORTHO05D004454 2.1e-12 75.9 109 43.1
PGR083G2342 Punica granatum HOM05D003857 ORTHO05D004454 3.6e-12 75.1 84 50.0
Aqoxy1G04245 Aquilegia oxysepala HOM05D003857 ORTHO05D004454 4.7e-12 74.7 105 43.8
Sabra16G0240200 Salix brachista HOM05D003857 ORTHO05D004454 4.7e-12 74.7 85 49.4
DCAR_002236 Daucus carota HOM05D003857 ORTHO05D004454 6.2e-12 74.3 98 42.9
Actinidia05015 Actinidia chinensis HOM05D003857 ORTHO05D004454 8.1e-12 73.9 91 49.5
COL.COLO4_09818 Corchorus olitorius HOM05D003857 ORTHO05D004454 8.1e-12 73.9 86 47.7
Phvul.003G085900 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 1.8e-11 72.8 87 42.5
Potri.006G017900 Populus trichocarpa HOM05D003857 ORTHO05D004454 1.8e-11 72.8 86 46.5
GSVIVG01003487001 Vitis vinifera HOM05D003857 ORTHO05D004454 1.8e-11 72.8 85 43.5
PSO210G1156 Papaver somniferum HOM05D003857 ORTHO05D004454 2.3e-11 72.4 92 43.5
Phvul.006G056400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 3.1e-11 72.0 91 46.2
PSO210G4960 Papaver somniferum HOM05D003857 ORTHO05D004454 4.0e-11 71.6 92 43.5
Haze_07004 Corylus avellana HOM05D003857 ORTHO05D004454 5.2e-11 71.2 90 42.2
Glyma.08G328700 Glycine max HOM05D003857 ORTHO05D004454 5.2e-11 71.2 91 48.4
Ciclev10009964m.g Citrus clementina HOM05D003857 ORTHO05D004454 6.8e-11 70.9 82 46.3
Haze_09813 Corylus avellana HOM05D003857 ORTHO05D004454 6.8e-11 70.9 84 51.2
Glyma.09G013000 Glycine max HOM05D003857 ORTHO05D004454 8.9e-11 70.5 83 43.4
Gohir.D01G076300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.2e-10 70.1 88 46.6
Gorai.002G099500 Gossypium raimondii HOM05D003857 ORTHO05D004454 1.2e-10 70.1 88 46.6
arahy.Tifrunner.gnm1.ann1.J6PND3 Arachis hypogaea HOM05D003857 ORTHO05D004454 1.5e-10 69.7 90 42.2
Gohir.A01G091000 Gossypium hirsutum HOM05D003857 ORTHO05D004454 1.5e-10 69.7 88 45.5
Aa31LG2G12460 Aethionema arabicum HOM05D003857 ORTHO05D004454 2.0e-10 69.3 82 43.9
arahy.Tifrunner.gnm1.ann1.A9XG53 Arachis hypogaea HOM05D003857 ORTHO05D004454 2.0e-10 69.3 90 42.2
Glyma.07G267300 Glycine max HOM05D003857 ORTHO05D004454 2.0e-10 69.3 87 41.4
MBI16_g22432_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 2.6e-10 68.9 91 42.9
Thecc.06G238500 Theobroma cacao HOM05D003857 ORTHO05D004454 2.6e-10 68.9 89 41.6
Sc21g0003640 Simmondsia chinensis HOM05D003857 ORTHO05D004454 3.4e-10 68.6 83 47.0
TPR.G10580 Trifolium pratense HOM05D003857 ORTHO05D004454 3.4e-10 68.6 85 41.2
Glyma.15G117900 Glycine max HOM05D003857 ORTHO05D004454 4.4e-10 68.2 82 42.7
Glyma.18G078100 Glycine max HOM05D003857 ORTHO05D004454 5.8e-10 67.8 91 46.2
Lalb_Chr15g0088131 Lupinus albus HOM05D003857 ORTHO05D004454 5.8e-10 67.8 86 39.5
Gohir.A13G133501 Gossypium hirsutum HOM05D003857 ORTHO05D004454 7.6e-10 67.4 84 44.0
Gohir.D13G136800 Gossypium hirsutum HOM05D003857 ORTHO05D004454 7.6e-10 67.4 84 44.0
Gorai.013G153300 Gossypium raimondii HOM05D003857 ORTHO05D004454 7.6e-10 67.4 84 44.0
Potri.016G007101 Populus trichocarpa HOM05D003857 ORTHO05D004454 2.9e-09 65.5 87 39.1
Lj4g0009185 Lotus japonicus HOM05D003857 ORTHO05D004454 3.8e-09 65.1 86 39.5
Rhsim04G0013000 Rhododendron simsii HOM05D003857 ORTHO05D004454 3.8e-09 65.1 93 41.9
Duzib192G0644 Durio zibethinus HOM05D003857 ORTHO05D004454 4.9e-09 64.7 86 43.0
MBI19_g22178_MAGBIO Magnolia biondii HOM05D003857 ORTHO05D004454 4.9e-09 64.7 66 54.5
MD00G1056900 Malus domestica HOM05D003857 ORTHO05D004454 6.4e-09 64.3 85 37.6
RcHm_v2.0_Chr5g0000661 Rosa chinensis HOM05D003857 ORTHO05D004454 6.4e-09 64.3 85 40.0
Prupe.4G005500 Prunus persica HOM05D003857 ORTHO05D004454 8.4e-09 63.9 78 43.6
ClCG01G010960 Citrullus lanatus HOM05D003857 ORTHO05D004454 1.1e-08 63.5 89 42.7
Phvul.006G140400 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 1.1e-08 63.5 83 41.0
Actinidia35399 Actinidia chinensis HOM05D003857 ORTHO05D004454 1.4e-08 63.2 60 55.0
AL3G24920 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 1.4e-08 63.2 91 42.9
C01p26490 Brassica napus HOM05D003857 ORTHO05D004454 1.9e-08 62.8 84 36.9
Ciclev10017306m.g Citrus clementina HOM05D003857 ORTHO05D004454 1.9e-08 62.8 83 39.8
DCAR_030845 Daucus carota HOM05D003857 ORTHO05D004454 1.9e-08 62.8 92 39.1
Nn1g03204 Nelumbo nucifera HOM05D003857 ORTHO05D004454 2.4e-08 62.4 84 42.9
Sabra16G0011900 Salix brachista HOM05D003857 ORTHO05D004454 3.2e-08 62.0 85 38.8
Sed0010782 Sechium edule HOM05D003857 ORTHO05D004454 3.2e-08 62.0 82 43.9
ATR0827G129 Amborella trichopoda HOM05D003857 ORTHO05D004454 4.1e-08 61.6 95 37.9
BolC5t34151H Brassica oleracea HOM05D003857 ORTHO05D004454 4.1e-08 61.6 89 42.7
Carub.0003s1252 Capsella rubella HOM05D003857 ORTHO05D004454 4.1e-08 61.6 91 41.8
AT3G13175 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 5.4e-08 61.2 91 42.9
Hma1.2p1_0036F.1_g022470 Hydrangea macrophylla HOM05D003857 ORTHO05D004454 5.4e-08 61.2 55 60.0
BcaC05g29205 Brassica carinata HOM05D003857 ORTHO05D004454 7.1e-08 60.8 90 42.2
C05p54780 Brassica napus HOM05D003857 ORTHO05D004454 7.1e-08 60.8 90 42.2
CsaV3_3G004060 Cucumis sativus L. HOM05D003857 ORTHO05D004454 7.1e-08 60.8 82 43.9
BolC1t02594H Brassica oleracea HOM05D003857 ORTHO05D004454 9.2e-08 60.5 84 35.7
Gohir.D06G162600 Gossypium hirsutum HOM05D003857 ORTHO05D004454 9.2e-08 60.5 82 41.5
Gorai.010G189800 Gossypium raimondii HOM05D003857 ORTHO05D004454 9.2e-08 60.5 82 41.5
THA.LOC104815698 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 9.2e-08 60.5 108 41.7
BcaNung00200 Brassica carinata HOM05D003857 ORTHO05D004454 1.2e-07 60.1 84 36.9
BolC1t05138H Brassica oleracea HOM05D003857 ORTHO05D004454 1.2e-07 60.1 90 42.2
BraA01t02029Z Brassica rapa HOM05D003857 ORTHO05D004454 1.2e-07 60.1 84 38.1
MELO3C026073.2 Cucumis melo HOM05D003857 ORTHO05D004454 1.2e-07 60.1 89 40.4
Sabra06G0013000 Salix brachista HOM05D003857 ORTHO05D004454 1.2e-07 60.1 90 41.1
BcaC07g37984 Brassica carinata HOM05D003857 ORTHO05D004454 1.6e-07 59.7 84 36.9
A01p40370 Brassica napus HOM05D003857 ORTHO05D004454 1.6e-07 59.7 90 43.3
BolC8t48365H Brassica oleracea HOM05D003857 ORTHO05D004454 1.6e-07 59.7 84 36.9
BraA01t04072Z Brassica rapa HOM05D003857 ORTHO05D004454 1.6e-07 59.7 90 43.3
CARHR087760 Cardamine hirsuta HOM05D003857 ORTHO05D004454 1.6e-07 59.7 90 43.3
A03p49780 Brassica napus HOM05D003857 ORTHO05D004454 2.1e-07 59.3 84 36.9
A05p36390 Brassica napus HOM05D003857 ORTHO05D004454 2.1e-07 59.3 90 41.1
BraA03t14073Z Brassica rapa HOM05D003857 ORTHO05D004454 2.1e-07 59.3 84 36.9
BraA05t22439Z Brassica rapa HOM05D003857 ORTHO05D004454 2.1e-07 59.3 90 41.1
Carub.0007s2513 Capsella rubella HOM05D003857 ORTHO05D004454 2.1e-07 59.3 84 36.9
Cpa.g.c35467.2 Carica papaya HOM05D003857 ORTHO05D004454 2.1e-07 59.3 83 38.6
Manes.08G070300 Manihot esculenta HOM05D003857 ORTHO05D004454 2.1e-07 59.3 88 37.5
arahy.Tifrunner.gnm1.ann1.QWC3QU Arachis hypogaea HOM05D003857 ORTHO05D004454 2.7e-07 58.9 90 43.3
arahy.Tifrunner.gnm1.ann1.Y3WDI1 Arachis hypogaea HOM05D003857 ORTHO05D004454 2.7e-07 58.9 90 43.3
C07p47840 Brassica napus HOM05D003857 ORTHO05D004454 2.7e-07 58.9 84 36.9
BolC7t45306H Brassica oleracea HOM05D003857 ORTHO05D004454 2.7e-07 58.9 84 36.9
ClCG10G004230 Citrullus lanatus HOM05D003857 ORTHO05D004454 2.7e-07 58.9 82 42.7
ClCG10G004260 Citrullus lanatus HOM05D003857 ORTHO05D004454 2.7e-07 58.9 82 42.7
Thhalv10027070m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 2.7e-07 58.9 84 38.1
Gohir.A06G156300 Gossypium hirsutum HOM05D003857 ORTHO05D004454 2.7e-07 58.9 82 39.0
Rhsim13G0142200 Rhododendron simsii HOM05D003857 ORTHO05D004454 2.7e-07 58.9 85 40.0
Sp7g14930 Schrenkiella parvula HOM05D003857 ORTHO05D004454 2.7e-07 58.9 89 36.0
C01p51910 Brassica napus HOM05D003857 ORTHO05D004454 3.5e-07 58.5 90 41.1
Phvul.008G278500 Phaseolus vulgaris HOM05D003857 ORTHO05D004454 3.5e-07 58.5 85 41.2
AL7G38610 Arabidopsis lyrata HOM05D003857 ORTHO05D004454 4.6e-07 58.2 84 36.9
BraA08t33236Z Brassica rapa HOM05D003857 ORTHO05D004454 4.6e-07 58.2 84 36.9
Thhalv10022264m.g Eutrema salsugineum HOM05D003857 ORTHO05D004454 4.6e-07 58.2 90 42.2
Migut.H01624 Erythranthe guttata HOM05D003857 ORTHO05D004454 6.0e-07 57.8 84 40.5
Sp3g11350 Schrenkiella parvula HOM05D003857 ORTHO05D004454 6.0e-07 57.8 90 41.1
A01p21200 Brassica napus HOM05D003857 ORTHO05D004454 7.8e-07 57.4 84 36.9
A08p12220 Brassica napus HOM05D003857 ORTHO05D004454 7.8e-07 57.4 84 36.9
CsaV3_1G015520 Cucumis sativus L. HOM05D003857 ORTHO05D004454 7.8e-07 57.4 89 39.3
THA.LOC104810291 Tarenaya hassleriana HOM05D003857 ORTHO05D004454 7.8e-07 57.4 94 41.5
Aa31LG8G380 Aethionema arabicum HOM05D003857 ORTHO05D004454 1.3e-06 56.6 91 41.8
BcaB06g25481 Brassica carinata HOM05D003857 ORTHO05D004454 1.3e-06 56.6 91 42.9
CiPaw.09G107600 Carya illinoinensis HOM05D003857 ORTHO05D004454 1.3e-06 56.6 85 34.1
Medtr5g095660 Medicago truncatula HOM05D003857 ORTHO05D004454 1.3e-06 56.6 85 42.4
Cc09_g00510 Coffea canephora HOM05D003857 ORTHO05D004454 1.7e-06 56.2 84 39.3
FvH4_3g00490 Fragaria vesca HOM05D003857 ORTHO05D004454 1.7e-06 56.2 84 39.3
Glyma.17G006700 Glycine max HOM05D003857 ORTHO05D004454 1.7e-06 56.2 87 35.6
Atru.chr1.2307 Acer truncatum HOM05D003857 ORTHO05D004454 3.0e-06 55.5 85 36.5
TPR.G8580 Trifolium pratense HOM05D003857 ORTHO05D004454 3.0e-06 55.5 85 40.0
AT4G16400 Arabidopsis thaliana HOM05D003857 ORTHO05D004454 3.9e-06 55.1 84 34.5
Sed0020326 Sechium edule HOM05D003857 ORTHO05D004454 3.9e-06 55.1 89 38.2
TPR.G6011 Trifolium pratense HOM05D003857 ORTHO05D004454 3.9e-06 55.1 85 36.5
FAN25G3265 Fragaria x ananassa HOM05D003857 ORTHO05D004454 5.1e-06 54.7 86 37.2


User provided reference genes

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