Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G15978 Striga asiatica HOM05D003873 ORTHO05D004127 7.7e-115 417.2 211 100.0
SGA_v2.0_scaffold60G20894 Striga asiatica HOM05D003873 ORTHO05D004127 3.7e-32 142.5 206 47.6
Migut.F00602 Erythranthe guttata HOM05D003873 ORTHO05D004127 1.6e-27 127.1 212 44.8
MSTRG.8896 Avicennia marina HOM05D003873 ORTHO05D004127 1.8e-26 123.6 213 42.3
Dinv34475 Davidia involucrata HOM05D003873 ORTHO05D004127 1.1e-23 114.4 211 39.3
Cpa.g.sc19.64 Carica papaya HOM05D003873 ORTHO05D004127 3.1e-23 112.8 204 39.2
CsaV3_5G010890 Cucumis sativus L. HOM05D003873 ORTHO05D004127 7.7e-22 108.2 161 46.6
Nitab4.5_0002279g0070 Nicotiana tabacum HOM05D003873 ORTHO05D004127 1.0e-21 107.8 222 37.8
Ciclev10032511m.g Citrus clementina HOM05D003873 ORTHO05D004127 1.7e-21 107.1 160 46.2
Hma1.2p1_0292F.1_g115910 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 5.0e-21 105.5 212 39.2
CARHR135690 Cardamine hirsuta HOM05D003873 ORTHO05D004127 8.5e-21 104.8 231 35.5
MELO3C020142.2 Cucumis melo HOM05D003873 ORTHO05D004127 1.1e-20 104.4 161 45.3
ECA233G5425 Erigeron canadensis HOM05D003873 ORTHO05D004127 1.1e-20 104.4 162 44.4
TAR369G0800 Trochodendron aralioides HOM05D003873 ORTHO05D004127 3.2e-20 102.8 224 35.7
BcaB06g29155 Brassica carinata HOM05D003873 ORTHO05D004127 4.2e-20 102.4 165 41.2
Lj8A55T86 Lonicera japonica HOM05D003873 ORTHO05D004127 4.2e-20 102.4 159 44.0
Lj1g0013289 Lotus japonicus HOM05D003873 ORTHO05D004127 4.2e-20 102.4 163 44.2
COL.COLO4_19435 Corchorus olitorius HOM05D003873 ORTHO05D004127 5.5e-20 102.1 196 37.2
Nitab4.5_0000375g0180 Nicotiana tabacum HOM05D003873 ORTHO05D004127 5.5e-20 102.1 200 39.5
Rhsim09G0185200 Rhododendron simsii HOM05D003873 ORTHO05D004127 5.5e-20 102.1 163 42.9
Cc02_g05430 Coffea canephora HOM05D003873 ORTHO05D004127 1.2e-19 100.9 212 38.2
Peaxi162Scf00167g01217 Petunia axillaris HOM05D003873 ORTHO05D004127 1.2e-19 100.9 160 41.2
PGR044G2565 Punica granatum HOM05D003873 ORTHO05D004127 1.2e-19 100.9 209 38.3
Actinidia31621 Actinidia chinensis HOM05D003873 ORTHO05D004127 2.1e-19 100.1 218 37.2
Potri.013G092700 Populus trichocarpa HOM05D003873 ORTHO05D004127 2.1e-19 100.1 162 42.6
TPR.G24518 Trifolium pratense HOM05D003873 ORTHO05D004127 2.7e-19 99.8 206 37.4
BcaC02g07324 Brassica carinata HOM05D000114 ORTHO05D004127 3.6e-19 99.4 162 42.0
Sed0001367 Sechium edule HOM05D003873 ORTHO05D004127 3.6e-19 99.4 163 41.1
Medtr1g007640 Medicago truncatula HOM05D003873 ORTHO05D004127 4.7e-19 99.0 160 43.1
TWI09G0384 Tripterygium wilfordii HOM05D003873 ORTHO05D004127 4.7e-19 99.0 164 42.7
C04p02110 Brassica napus HOM05D003873 ORTHO05D004127 6.1e-19 98.6 166 41.6
BolC4t21859H Brassica oleracea HOM05D003873 ORTHO05D004127 6.1e-19 98.6 166 41.6
CANSAT56G3412 Cannabis sativa HOM05D003873 ORTHO05D004127 6.1e-19 98.6 160 42.5
Psat6g035920 Pisum sativum HOM05D003873 ORTHO05D004127 8.0e-19 98.2 162 42.6
BraA04t18560Z Brassica rapa HOM05D000114 ORTHO05D004127 1.0e-18 97.8 161 42.2
Sp4g22920 Schrenkiella parvula HOM05D003873 ORTHO05D004127 1.0e-18 97.8 209 37.8
Sp4g22930 Schrenkiella parvula HOM05D003873 ORTHO05D004127 1.0e-18 97.8 178 39.3
AUR62030624 Chenopodium quinoa HOM05D003873 ORTHO05D004127 1.4e-18 97.4 160 41.2
Cfa001222 Carpinus fangiana HOM05D003873 ORTHO05D004127 1.8e-18 97.1 206 38.3
RcHm_v2.0_Chr1g0371921 Rosa chinensis HOM05D003873 ORTHO05D004127 1.8e-18 97.1 161 41.0
Hund15823 Selenicereus undatus HOM05D003873 ORTHO05D004127 1.8e-18 97.1 159 41.5
AT2G40600 Arabidopsis thaliana HOM05D003873 ORTHO05D004127 2.3e-18 96.7 210 37.1
arahy.Tifrunner.gnm1.ann1.26CUCK Arachis hypogaea HOM05D003873 ORTHO05D004127 2.3e-18 96.7 242 36.0
A04p31040 Brassica napus HOM05D000114 ORTHO05D004127 2.3e-18 96.7 161 41.6
A05p01810 Brassica napus HOM05D003873 ORTHO05D004127 2.3e-18 96.7 162 42.0
PGSC0003DMG400011653 Solanum tuberosum HOM05D003873 ORTHO05D004127 2.3e-18 96.7 160 42.5
Gohir.A13G006800 Gossypium hirsutum HOM05D003873 ORTHO05D004127 3.0e-18 96.3 160 40.0
Gorai.013G007200 Gossypium raimondii HOM05D003873 ORTHO05D004127 3.0e-18 96.3 160 40.0
MD01G1164200 Malus domestica HOM05D003873 ORTHO05D004127 3.0e-18 96.3 204 38.2
Aqoxy4G02389 Aquilegia oxysepala HOM05D003873 ORTHO05D004127 4.0e-18 95.9 159 42.1
Gohir.D13G007000 Gossypium hirsutum HOM05D003873 ORTHO05D004127 4.0e-18 95.9 160 40.0
Manes.07G140600 Manihot esculenta HOM05D003873 ORTHO05D004127 4.0e-18 95.9 222 33.3
arahy.Tifrunner.gnm1.ann1.I2EQP5 Arachis hypogaea HOM05D003873 ORTHO05D004127 5.2e-18 95.5 228 36.0
C04p68430 Brassica napus HOM05D000114 ORTHO05D004127 5.2e-18 95.5 157 42.0
BolC4t28343H Brassica oleracea HOM05D000114 ORTHO05D004127 5.2e-18 95.5 161 41.6
CAN.G203.49 Capsicum annuum HOM05D003873 ORTHO05D004127 5.2e-18 95.5 201 37.8
CiPaw.02G198500 Carya illinoinensis HOM05D003873 ORTHO05D004127 5.2e-18 95.5 232 36.6
HanXRQChr17g0560751 Helianthus annuus HOM05D003873 ORTHO05D004127 5.2e-18 95.5 158 41.8
Phvul.001G074800 Phaseolus vulgaris HOM05D003873 ORTHO05D004127 5.2e-18 95.5 206 36.9
Aqoxy4G02390 Aquilegia oxysepala HOM05D003873 ORTHO05D004127 6.7e-18 95.1 201 36.8
arahy.Tifrunner.gnm1.ann1.8SN1W1 Arachis hypogaea HOM05D003873 ORTHO05D004127 8.8e-18 94.7 160 40.6
Carub.0004s2289 Capsella rubella HOM05D003873 ORTHO05D004127 8.8e-18 94.7 180 38.9
BcaB06g29154 Brassica carinata HOM05D003873 ORTHO05D004127 1.1e-17 94.4 197 38.6
BcaC02g12725 Brassica carinata HOM05D003873 ORTHO05D004127 1.1e-17 94.4 166 41.0
Glyma.14G145000 Glycine max HOM05D003873 ORTHO05D004127 1.1e-17 94.4 161 41.0
QL08p064588 Quercus lobata HOM05D003873 ORTHO05D004127 1.1e-17 94.4 162 40.7
AL4G38460 Arabidopsis lyrata HOM05D003873 ORTHO05D004127 1.5e-17 94.0 207 34.8
arahy.Tifrunner.gnm1.ann1.HNCJ3C Arachis hypogaea HOM05D003873 ORTHO05D004127 1.5e-17 94.0 160 40.0
Solyc05g052260.3 Solanum lycopersicum HOM05D003873 ORTHO05D004127 1.5e-17 94.0 201 37.3
unitig_747.g21397 Utricularia gibba HOM05D003873 ORTHO05D004127 1.5e-17 94.0 202 37.6
GSVIVG01032680001 Vitis vinifera HOM05D003873 ORTHO05D004127 2.0e-17 93.6 160 40.6
Gohir.D10G185525 Gossypium hirsutum HOM05D003873 ORTHO05D004127 3.3e-17 92.8 161 38.5
Sabra13G0064000 Salix brachista HOM05D003873 ORTHO05D004127 3.3e-17 92.8 222 35.1
TWI73G0123 Tripterygium wilfordii HOM05D003873 ORTHO05D004127 3.3e-17 92.8 161 41.0
Atru.BG.255.p Acer truncatum HOM05D003873 ORTHO05D004127 4.4e-17 92.4 152 42.8
PSO210G0156 Papaver somniferum HOM05D000620 ORTHO05D000537 4.4e-17 92.4 205 35.6
PSO384G4386 Papaver somniferum HOM05D003873 ORTHO05D004127 4.4e-17 92.4 207 37.2
Thecc.10G182600 Theobroma cacao HOM05D003873 ORTHO05D004127 4.4e-17 92.4 193 35.2
BraA05t19179Z Brassica rapa HOM05D003873 ORTHO05D004127 5.7e-17 92.0 169 39.6
Lalb_Chr08g0239001 Lupinus albus HOM05D003873 ORTHO05D004127 5.7e-17 92.0 161 39.8
THA.LOC104824360 Tarenaya hassleriana HOM05D003873 ORTHO05D004127 5.7e-17 92.0 205 36.6
Thecc.10G182400 Theobroma cacao HOM05D003873 ORTHO05D004127 5.7e-17 92.0 157 39.5
Aa31LG3G1520 Aethionema arabicum HOM05D003873 ORTHO05D004127 7.5e-17 91.7 172 36.6
Ciclev10002574m.g Citrus clementina HOM05D003873 ORTHO05D004127 7.5e-17 91.7 184 35.9
Duzib128G1260 Durio zibethinus HOM05D003873 ORTHO05D004127 7.5e-17 91.7 159 40.3
EL10Ac2g02628 Beta vulgaris HOM05D003873 ORTHO05D004127 9.7e-17 91.3 202 36.6
Duzib114G0555 Durio zibethinus HOM05D003873 ORTHO05D004127 9.7e-17 91.3 195 34.9
Eucgr.J00121 Eucalyptus grandis HOM05D003873 ORTHO05D004127 9.7e-17 91.3 204 36.3
Thecc.10G182200 Theobroma cacao HOM05D003873 ORTHO05D004127 9.7e-17 91.3 195 34.4
CDE06G1522 Ceratophyllum demersum HOM05D003873 ORTHO05D004127 1.3e-16 90.9 166 38.0
Thhalv10017560m.g Eutrema salsugineum HOM05D003873 ORTHO05D004127 1.3e-16 90.9 242 33.9
PSO017G6038 Papaver somniferum HOM05D003873 ORTHO05D004127 1.3e-16 90.9 201 35.8
AL4G38470 Arabidopsis lyrata HOM05D003873 ORTHO05D004127 1.7e-16 90.5 159 39.0
Prupe.2G262000 Prunus persica HOM05D003873 ORTHO05D004127 1.7e-16 90.5 160 40.0
HPP92_011975 Vanilla planifolia HOM05D003873 ORTHO05D004127 1.7e-16 90.5 161 40.4
CARHR135710 Cardamine hirsuta HOM05D003873 ORTHO05D004127 2.2e-16 90.1 159 39.0
AUR62024920 Chenopodium quinoa HOM05D003873 ORTHO05D004127 2.2e-16 90.1 201 35.3
Lj1C966G3 Lonicera japonica HOM05D003873 ORTHO05D004127 2.8e-16 89.7 80 56.2
Sc11g0005790 Simmondsia chinensis HOM05D003873 ORTHO05D004127 2.8e-16 89.7 210 35.7
Atru.chr1.2930 Acer truncatum HOM05D003873 ORTHO05D004127 6.3e-16 88.6 165 36.4
Carub.0004s2288 Capsella rubella HOM05D003873 ORTHO05D004127 1.1e-15 87.8 166 36.7
Hma1.2p1_0292F.1_g115890 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 1.4e-15 87.4 160 40.6
PSO017G6047 Papaver somniferum HOM05D003873 ORTHO05D004127 1.4e-15 87.4 159 37.1
Gohir.A10G178900 Gossypium hirsutum HOM05D003873 ORTHO05D004127 4.1e-15 85.9 79 53.2
Ciclev10002586m.g Citrus clementina HOM05D003873 ORTHO05D004127 5.3e-15 85.5 93 48.4
PSO210G5103 Papaver somniferum HOM05D000620 ORTHO05D000537 5.3e-15 85.5 215 34.9
PSO017G3604 Papaver somniferum HOM05D003873 ORTHO05D004127 7.0e-15 85.1 79 55.7
Nn2g10324 Nelumbo nucifera HOM05D003873 ORTHO05D004127 1.2e-14 84.3 209 35.9
Psat6g036760 Pisum sativum HOM05D003873 ORTHO05D004127 2.0e-14 83.6 80 52.5
PSO170G1346 Papaver somniferum HOM05D003873 ORTHO05D004127 1.0e-13 81.3 212 34.4
SalBow3G4343 Salvia bowleyana HOM05D003873 ORTHO05D004127 1.0e-13 81.3 129 42.6
SHI30175 Sapria himalayana HOM05D003873 ORTHO05D004127 1.0e-13 81.3 165 34.5
Haze_17340 Corylus avellana HOM05D003873 ORTHO05D004127 1.3e-13 80.9 182 39.0
FAN15G2521 Fragaria x ananassa HOM05D003873 ORTHO05D035890 1.7e-13 80.5 76 56.6
CSS0018140 Camellia sinensis var. sinensis HOM05D003873 ORTHO05D004127 2.9e-13 79.7 189 36.0
MBI03_g22825_MAGBIO Magnolia biondii HOM05D003873 ORTHO05D004127 2.9e-13 79.7 149 34.9
PSO210G1471 Papaver somniferum HOM05D000620 ORTHO05D000537 3.8e-13 79.3 222 32.0
PSO384G3509 Papaver somniferum HOM05D003873 ORTHO05D004127 3.8e-13 79.3 196 34.2
PSO210G0819 Papaver somniferum HOM05D000620 ORTHO05D000537 6.5e-13 78.6 204 32.8
PSO017G0702 Papaver somniferum HOM05D003873 ORTHO05D004127 1.5e-12 77.4 199 34.2
vmacro09968 Vaccinium macrocarpon HOM05D003873 ORTHO05D004127 1.9e-12 77.0 192 37.5
arahy.Tifrunner.gnm1.ann1.YWMZ6J Arachis hypogaea HOM05D003873 ORTHO05D004127 5.5e-12 75.5 75 52.0
Manes.10G000800 Manihot esculenta HOM05D003873 ORTHO05D004127 1.6e-11 73.9 79 49.4
ClCG07G005060 Citrullus lanatus HOM05D003873 ORTHO05D004127 2.1e-11 73.6 136 41.9
Ca_12777_v3 Cicer arietinum L. HOM05D003873 ORTHO05D004127 2.7e-11 73.2 140 41.4
Oeu027748.1 Olea europaea HOM05D003873 ORTHO05D004127 2.7e-11 73.2 185 34.6
Lsat_1_v5_gn_9_122981 Lactuca sativa HOM05D003873 ORTHO05D004127 1.0e-10 71.2 212 28.3
CBR_g23787 Chara braunii HOM05D003873 ORTHO05D004127 1.8e-10 70.5 167 30.5
FAN03G1281 Fragaria x ananassa HOM05D003873 ORTHO05D004127 1.8e-10 70.5 162 35.8
Os03g0336500 Oryza sativa ssp. japonica HOM05D003873 ORTHO05D004127 1.8e-10 70.5 161 32.3
Zm00001eb016110 Zea mays HOM05D003873 ORTHO05D004127 2.3e-10 70.1 161 32.3
FvH4_7g25700 Fragaria vesca HOM05D003873 ORTHO05D004127 4.0e-10 69.3 141 37.6
TPR.G3290 Trifolium pratense HOM05D003873 ORTHO05D004127 6.8e-10 68.6 75 46.7
FAN06G3214 Fragaria x ananassa HOM05D000009 ORTHO05D000008 8.8e-10 68.2 139 36.7
PRCOL_00002258 Prasinoderma coloniale HOM05D003873 ORTHO05D004127 1.2e-09 67.8 157 34.4
VMungo0647G2356 Vigna mungo HOM05D003873 ORTHO05D004127 1.5e-09 67.4 182 34.6
CSS0002427 Camellia sinensis var. sinensis HOM05D003873 ORTHO05D004127 2.0e-09 67.0 136 37.5
CSS0021993 Camellia sinensis var. sinensis HOM05D003873 ORTHO05D004127 2.0e-09 67.0 136 37.5
Atru.chr3.3508 Acer truncatum HOM05D003873 ORTHO05D004127 2.6e-09 66.6 148 35.1
Atru.chr3.3515 Acer truncatum HOM05D003873 ORTHO05D004127 2.6e-09 66.6 148 35.1
Mapoly0093s0078 Marchantia polymorpha HOM05D003873 ORTHO05D004127 2.6e-09 66.6 156 32.1
Pp3c4_24790 Physcomitrium patens HOM05D003873 ORTHO05D004127 3.4e-09 66.2 160 30.6
Sopen05g030800 Solanum pennellii HOM05D003873 ORTHO05D004127 3.4e-09 66.2 186 33.9
Hma1.2p1_0292F.1_g115900 Hydrangea macrophylla HOM05D003873 ORTHO05D004127 4.4e-09 65.9 128 40.6
Oeu004079.1 Olea europaea HOM05D003873 ORTHO05D004127 9.8e-09 64.7 138 37.7
Dinv21841 Davidia involucrata HOM05D003873 ORTHO05D004127 1.3e-08 64.3 58 58.6
Lsat_1_v5_gn_8_13601 Lactuca sativa HOM05D003873 ORTHO05D004127 1.3e-08 64.3 213 27.2
Gorai.011G208100 Gossypium raimondii HOM05D003873 ORTHO05D004127 2.8e-08 63.2 140 34.3
ATR1127G039 Amborella trichopoda HOM05D003873 ORTHO05D004127 4.8e-08 62.4 149 32.9
arahy.Tifrunner.gnm1.ann1.55I313 Arachis hypogaea HOM05D003873 ORTHO05D004127 6.3e-08 62.0 79 41.8
Lj5g0010993 Lotus japonicus HOM05D003873 ORTHO05D004127 1.4e-07 60.8 183 32.2
SMO141G0289 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.4e-07 60.8 162 30.2
C01p42730 Brassica napus HOM05D003873 ORTHO05D004127 1.8e-07 60.5 66 48.5
Pp3c13_3890 Physcomitrium patens HOM05D003873 ORTHO05D004127 9.1e-07 58.2 163 28.8
SMO170G0066 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 1.2e-06 57.8 77 36.4
SGA_v2.0_scaffold43G16453 Striga asiatica HOM05D004282 ORTHO05D404191 2.0e-06 57.0 35 77.1
SMO198G0098 Selaginella moellendorffii HOM05D003873 ORTHO05D004127 3.5e-06 56.2 79 36.7


User provided reference genes

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