Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 2.6e-112 408.7 203 100.0
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 8.9e-92 340.5 201 81.1
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 6.3e-90 334.3 204 81.4
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.5e-86 323.2 204 79.4
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 1.5e-86 323.2 204 77.9
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 3.1e-84 315.5 204 75.5
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 3.1e-84 315.5 194 79.9
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 8.9e-84 313.9 204 77.9
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 1.2e-83 313.5 206 77.2
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 2.0e-83 312.8 204 75.0
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 4.9e-82 308.1 203 72.4
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.9e-82 308.1 205 76.6
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 4.9e-82 308.1 205 75.1
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 8.3e-82 307.4 205 74.6
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 1.9e-81 306.2 202 76.2
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 1.9e-81 306.2 205 76.6
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 2.4e-81 305.8 204 74.0
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 2.4e-81 305.8 205 76.1
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 4.1e-81 305.1 204 73.0
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 4.1e-81 305.1 205 74.1
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 9.2e-81 303.9 204 76.0
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 1.6e-80 303.1 203 74.9
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.6e-80 303.1 207 74.4
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 2.0e-80 302.8 204 73.0
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 2.7e-80 302.4 204 73.5
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 3.5e-80 302.0 204 71.6
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 1.0e-79 300.4 204 72.1
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.0e-79 300.4 205 72.2
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 1.3e-79 300.1 206 73.3
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 2.3e-79 299.3 205 73.7
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 3.0e-79 298.9 205 72.2
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 3.9e-79 298.5 204 73.0
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.9e-79 298.5 204 73.0
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 5.0e-79 298.1 204 71.1
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 6.6e-79 297.7 204 71.1
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 6.6e-79 297.7 204 73.0
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 1.9e-78 296.2 204 72.1
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.9e-78 296.2 198 76.8
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 2.5e-78 295.8 206 72.3
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 2.5e-78 295.8 203 70.4
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 4.3e-78 295.0 204 70.6
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 7.3e-78 294.3 204 72.1
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 7.3e-78 294.3 207 72.5
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 3.6e-77 292.0 202 71.8
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 1.1e-76 290.4 199 72.9
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 3.1e-76 288.9 203 70.4
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 6.8e-76 287.7 204 71.1
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 6.8e-76 287.7 204 69.6
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 1.5e-75 286.6 204 69.1
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 1.5e-75 286.6 204 69.1
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.0e-75 286.2 205 68.8
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 2.6e-75 285.8 205 68.8
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 4.4e-75 285.0 204 68.1
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 4.4e-75 285.0 227 64.8
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 4.4e-75 285.0 205 68.8
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 5.8e-75 284.6 204 69.6
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 5.8e-75 284.6 202 70.3
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 7.5e-75 284.3 199 71.4
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 7.5e-75 284.3 202 68.3
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 9.8e-75 283.9 203 68.5
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 9.8e-75 283.9 203 68.5
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 9.8e-75 283.9 203 72.4
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 1.7e-74 283.1 204 69.1
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 1.7e-74 283.1 204 67.6
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 1.7e-74 283.1 204 69.1
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 1.7e-74 283.1 204 69.1
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 2.2e-74 282.7 205 67.8
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 2.2e-74 282.7 203 68.5
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 2.9e-74 282.3 203 68.5
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 3.7e-74 282.0 204 68.1
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 4.9e-74 281.6 204 67.6
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 4.9e-74 281.6 204 67.6
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 4.9e-74 281.6 204 68.1
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 4.9e-74 281.6 204 71.1
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 6.4e-74 281.2 204 68.6
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 6.4e-74 281.2 204 67.6
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 6.4e-74 281.2 204 68.1
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 6.4e-74 281.2 200 69.5
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 1.1e-73 280.4 205 68.3
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 1.4e-73 280.0 205 71.2
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.9e-73 279.6 199 69.8
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 2.4e-73 279.3 199 68.8
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 3.2e-73 278.9 204 66.2
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 3.2e-73 278.9 204 66.2
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 4.1e-73 278.5 202 67.8
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 5.4e-73 278.1 203 67.5
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 7.1e-73 277.7 203 68.0
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 1.2e-72 276.9 204 66.7
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 1.2e-72 276.9 193 71.0
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 1.2e-72 276.9 199 68.8
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 2.1e-72 276.2 205 65.4
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 2.7e-72 275.8 203 67.0
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 3.5e-72 275.4 204 67.6
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 3.5e-72 275.4 204 67.2
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 1.0e-71 273.9 204 65.7
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.0e-71 273.9 209 67.5
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.3e-71 273.5 201 67.2
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 1.3e-71 273.5 204 66.7
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.3e-71 273.5 203 68.0
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.7e-71 273.1 204 66.7
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 1.7e-71 273.1 201 65.2
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.7e-71 273.1 203 67.5
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 2.3e-71 272.7 201 67.2
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 2.3e-71 272.7 205 65.4
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 6.6e-71 271.2 214 64.5
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 8.6e-71 270.8 202 69.8
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 8.6e-71 270.8 199 68.8
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 1.1e-70 270.4 204 65.2
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 1.5e-70 270.0 205 64.9
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 2.5e-70 269.2 205 68.3
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 5.6e-70 268.1 203 69.5
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 3.1e-68 262.3 255 56.1
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 5.8e-67 258.1 204 60.3
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.1e-65 253.8 205 64.9
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 2.4e-65 252.7 204 63.7
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 4.1e-65 251.9 205 62.9
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.3e-63 246.9 192 63.0
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 3.6e-61 238.8 207 56.0
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 7.1e-57 224.6 211 53.6
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.7e-55 219.9 211 53.6
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 8.7e-55 217.6 202 55.4
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 8.1e-53 211.1 214 51.4
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 2.4e-52 209.5 205 58.0
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 2.4e-52 209.5 140 75.0
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 7.6e-51 204.5 139 72.7
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.3e-50 203.8 145 74.5
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 1.1e-49 200.7 145 68.3
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 1.9e-49 199.9 150 67.3
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.4e-44 183.7 148 66.2
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.9e-42 176.0 148 64.2
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 4.9e-42 175.3 201 46.3
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.5e-38 163.7 127 63.8
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 5.3e-36 155.2 174 54.0
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 9.0e-28 127.9 194 37.6
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 1.0e-26 124.4 201 36.8
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 8.4e-26 121.3 197 38.6
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 8.7e-23 111.3 77 66.2
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 5.7e-22 108.6 124 47.6
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.2e-21 104.8 136 45.6
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 2.0e-19 100.1 98 54.1
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 4.5e-19 99.0 69 68.1
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.7e-18 97.1 66 69.7
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.0e-15 87.8 69 68.1
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 9.7e-14 81.3 51 74.5
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 9.7e-14 81.3 74 60.8
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 4.1e-12 75.9 63 60.3
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 8.5e-10 68.2 113 38.1
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 1.6e-08 63.9 65 53.8
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.9e-07 59.3 50 60.0
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 3.9e-07 59.3 50 60.0
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 2.0e-06 57.0 37 62.2


User provided reference genes

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