Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold428G51522 Striga asiatica HOM05D003821 ORTHO05D004449 2.3e-84 315.5 154 100.0
SGA_v2.0_scaffold147G36288 Striga asiatica HOM05D003821 ORTHO05D004449 2.1e-24 116.3 73 80.8
Nitab4.5_0000570g0120 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.7e-23 113.2 69 79.7
SGA_v2.0_scaffold91G27999 Striga asiatica HOM05D003821 ORTHO05D004449 6.2e-21 104.8 113 56.6
MSTRG.24794 Avicennia marina HOM05D003821 ORTHO05D004449 3.1e-20 102.4 89 62.9
Migut.G00164 Erythranthe guttata HOM05D003821 ORTHO05D004449 5.3e-20 101.7 87 65.5
FAN12G1096 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.2e-19 100.5 71 71.8
Oeu027727.1 Olea europaea HOM05D003821 ORTHO05D004449 2.0e-19 99.8 86 62.8
Peaxi162Scf00048g00209 Petunia axillaris HOM05D003821 ORTHO05D004449 2.6e-19 99.4 64 78.1
MSTRG.3917 Avicennia marina HOM05D003821 ORTHO05D004449 3.4e-19 99.0 87 64.4
CAN.G185.14 Capsicum annuum HOM05D003821 ORTHO05D004449 9.9e-19 97.4 86 62.8
Oeu026313.1 Olea europaea HOM05D003821 ORTHO05D004449 2.9e-18 95.9 86 61.6
Rhsim02G0009100 Rhododendron simsii HOM05D003821 ORTHO05D004449 3.8e-18 95.5 100 55.0
Nitab4.5_0000191g0110 Nicotiana tabacum HOM05D003821 ORTHO05D004449 4.9e-18 95.1 137 46.0
FAN17G0959 Fragaria x ananassa HOM05D003821 ORTHO05D004449 1.1e-17 94.0 66 74.2
Manes.15G012400 Manihot esculenta HOM05D003821 ORTHO05D004449 3.2e-17 92.4 86 60.5
Hma1.2p1_0078F.1_g040550 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 5.4e-17 91.7 86 61.6
Nitab4.5_0004438g0100 Nicotiana tabacum HOM05D003821 ORTHO05D004449 1.2e-16 90.5 93 54.8
SalBow2G1159 Salvia bowleyana HOM05D003821 ORTHO05D004449 1.7e-15 86.7 97 54.6
ClCG09G006050 Citrullus lanatus HOM05D003821 ORTHO05D004449 2.3e-15 86.3 68 66.2
Nitab4.5_0003546g0070 Nicotiana tabacum HOM05D003821 ORTHO05D004449 2.3e-15 86.3 116 45.7
TWI09G0102 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 8.7e-15 84.3 85 55.3
TWI53G1984 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 1.5e-14 83.6 85 54.1
PGSC0003DMG400022856 Solanum tuberosum HOM05D003821 ORTHO05D004449 2.5e-14 82.8 117 45.3
BcaC07g37933 Brassica carinata HOM05D003821 ORTHO05D004449 4.3e-14 82.0 80 62.5
BcaC06g32965 Brassica carinata HOM05D003821 ORTHO05D004449 5.6e-14 81.6 67 65.7
CiPaw.08G097300 Carya illinoinensis HOM05D003821 ORTHO05D004449 5.6e-14 81.6 85 54.1
Actinidia32231 Actinidia chinensis HOM05D003821 ORTHO05D004449 9.6e-14 80.9 78 59.0
BcaNung00244 Brassica carinata HOM05D000802 ORTHO05D013138 1.6e-13 80.1 112 48.2
CiPaw.07G106400 Carya illinoinensis HOM05D003821 ORTHO05D004449 1.6e-13 80.1 85 56.5
Haze_01204 Corylus avellana HOM05D003821 ORTHO05D004449 2.1e-13 79.7 103 48.5
AL7G39490 Arabidopsis lyrata HOM05D003821 ORTHO05D004449 3.6e-13 79.0 86 54.7
AT4G15802 Arabidopsis thaliana HOM05D003821 ORTHO05D004449 3.6e-13 79.0 86 54.7
AUR62008616 Chenopodium quinoa HOM05D003821 ORTHO05D004449 4.8e-13 78.6 81 55.6
vmacro15236 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 4.8e-13 78.6 107 47.7
BcaC06g33446 Brassica carinata HOM05D003821 ORTHO05D004449 6.2e-13 78.2 80 56.2
A01p21700 Brassica napus HOM05D000802 ORTHO05D013138 1.1e-12 77.4 77 62.3
A03p49340 Brassica napus HOM05D003821 ORTHO05D004449 1.4e-12 77.0 87 52.9
Phvul.009G247900 Phaseolus vulgaris HOM05D003821 ORTHO05D004449 1.4e-12 77.0 73 56.2
Psat3g022560 Pisum sativum HOM05D003821 ORTHO05D004449 1.4e-12 77.0 86 52.3
Sc24g0003850 Simmondsia chinensis HOM05D000714 ORTHO05D000544 1.4e-12 77.0 72 59.7
AUR62033168 Chenopodium quinoa HOM05D003821 ORTHO05D004449 1.8e-12 76.6 81 54.3
Ca_10352_v3 Cicer arietinum L. HOM05D003821 ORTHO05D004449 1.8e-12 76.6 85 51.8
Haze_04896 Corylus avellana HOM05D003821 ORTHO05D004449 3.1e-12 75.9 95 48.4
Carub.0007s2585 Capsella rubella HOM05D003821 ORTHO05D004449 4.0e-12 75.5 82 54.9
Sed0001615 Sechium edule HOM05D003821 ORTHO05D004449 5.3e-12 75.1 101 47.5
CARHR290310 Cardamine hirsuta HOM05D003821 ORTHO05D004449 6.9e-12 74.7 86 52.3
COL.COLO4_13871 Corchorus olitorius HOM05D003821 ORTHO05D004449 6.9e-12 74.7 94 48.9
FAN15G2810 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.9e-12 74.7 77 54.5
FAN24G2279 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.9e-12 74.7 77 54.5
FAN27G2508 Fragaria x ananassa HOM05D003821 ORTHO05D004449 6.9e-12 74.7 77 53.2
FAN20G2567 Fragaria x ananassa HOM05D000897 ORTHO05D000716 9.0e-12 74.3 90 47.8
BraA08t33190Z Brassica rapa HOM05D003821 ORTHO05D004449 1.2e-11 73.9 105 48.6
Ah.04g153550 Amaranthus hybridus HOM05D003821 ORTHO05D004449 2.0e-11 73.2 77 57.1
VMungo1309G1076 Vigna mungo HOM05D003821 ORTHO05D004449 2.0e-11 73.2 79 51.9
BcaB04g18333 Brassica carinata HOM05D003821 ORTHO05D004449 2.6e-11 72.8 90 50.0
FAN07G0841 Fragaria x ananassa HOM05D003821 ORTHO05D004449 3.4e-11 72.4 87 49.4
A08p11990 Brassica napus HOM05D003821 ORTHO05D004449 4.5e-11 72.0 156 38.5
BolC7t45268H Brassica oleracea HOM05D003821 ORTHO05D004449 5.8e-11 71.6 89 49.4
vmacro08148 Vaccinium macrocarpon HOM05D003821 ORTHO05D004449 5.8e-11 71.6 158 35.4
Migut.N00088 Erythranthe guttata HOM05D003821 ORTHO05D004449 7.6e-11 71.2 88 51.1
BraA03t14035Z Brassica rapa HOM05D003821 ORTHO05D004449 9.9e-11 70.9 86 50.0
DCAR_013986 Daucus carota HOM05D003821 ORTHO05D004449 1.7e-10 70.1 99 45.5
Cpa.g.sc9.208 Carica papaya HOM05D003821 ORTHO05D004449 2.2e-10 69.7 91 47.3
DCAR_002813 Daucus carota HOM05D003821 ORTHO05D004449 2.2e-10 69.7 71 53.5
QL10p053326 Quercus lobata HOM05D003821 ORTHO05D004449 2.2e-10 69.7 104 44.2
QL10p054532 Quercus lobata HOM05D003821 ORTHO05D004449 2.2e-10 69.7 104 44.2
Thecc.04G284600 Theobroma cacao HOM05D003821 ORTHO05D004449 2.9e-10 69.3 85 49.4
Atru.chr4.2835 Acer truncatum HOM05D003821 ORTHO05D004449 4.9e-10 68.6 133 38.3
arahy.Tifrunner.gnm1.ann1.UD53LE Arachis hypogaea HOM05D003821 ORTHO05D004449 4.9e-10 68.6 81 50.6
Prupe.1G136900 Prunus persica HOM05D003821 ORTHO05D004449 6.4e-10 68.2 86 48.8
RcHm_v2.0_Chr6g0293541 Rosa chinensis HOM05D003821 ORTHO05D004449 6.4e-10 68.2 106 43.4
CAN.G484.32 Capsicum annuum HOM05D003821 ORTHO05D004449 1.1e-09 67.4 130 41.5
Rhsim04G0221500 Rhododendron simsii HOM05D003821 ORTHO05D004449 1.1e-09 67.4 52 69.2
BraA01t02079Z Brassica rapa HOM05D000802 ORTHO05D013138 1.4e-09 67.0 104 46.2
Potri.010G025000 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.9e-09 66.6 86 45.3
Medtr1g088760 Medicago truncatula HOM05D003821 ORTHO05D004449 2.4e-09 66.2 113 38.9
RcHm_v2.0_Chr4g0422221 Rosa chinensis HOM05D003821 ORTHO05D004449 4.2e-09 65.5 43 79.1
Os06g0274000 Oryza sativa ssp. japonica HOM05D003821 ORTHO05D004449 7.1e-09 64.7 76 53.9
TPR.G9594 Trifolium pratense HOM05D003821 ORTHO05D004449 7.1e-09 64.7 113 39.8
CsaV3_7G029090 Cucumis sativus L. HOM05D003821 ORTHO05D004449 1.2e-08 63.9 70 54.3
C07p47410 Brassica napus HOM05D003821 ORTHO05D004449 1.6e-08 63.5 115 38.3
unitig_748.g8733 Utricularia gibba HOM05D003821 ORTHO05D004449 1.6e-08 63.5 99 43.4
CSS0027872 Camellia sinensis var. sinensis HOM05D003821 ORTHO05D004449 2.1e-08 63.2 44 72.7
FvH4_4g18020 Fragaria vesca HOM05D003821 ORTHO05D004449 2.1e-08 63.2 87 48.3
Sabra08G0153500 Salix brachista HOM05D003821 ORTHO05D004449 2.1e-08 63.2 43 74.4
Gorai.004G142200 Gossypium raimondii HOM05D003821 ORTHO05D004449 2.7e-08 62.8 125 35.2
EL10Ac7g17441 Beta vulgaris HOM05D003821 ORTHO05D004449 3.5e-08 62.4 126 37.3
TPR.G33980 Trifolium pratense HOM05D003821 ORTHO05D004449 3.5e-08 62.4 94 43.6
arahy.Tifrunner.gnm1.ann1.LH51N9 Arachis hypogaea HOM05D003821 ORTHO05D004449 4.6e-08 62.0 94 43.6
CANSAT78G0465 Cannabis sativa HOM05D003821 ORTHO05D004449 4.6e-08 62.0 97 44.3
Ciclev10007067m.g Citrus clementina HOM05D003821 ORTHO05D004449 4.6e-08 62.0 128 35.9
PGR031G0623 Punica granatum HOM05D003821 ORTHO05D004449 4.6e-08 62.0 86 47.7
unitig_32.g10644 Utricularia gibba HOM05D003821 ORTHO05D004449 6.0e-08 61.6 37 81.1
Nn4g25849 Nelumbo nucifera HOM05D003821 ORTHO05D004449 7.9e-08 61.2 85 44.7
TAR362G0968 Trochodendron aralioides HOM05D003821 ORTHO05D004449 7.9e-08 61.2 73 49.3
Potri.008G208100 Populus trichocarpa HOM05D003821 ORTHO05D004449 1.0e-07 60.8 86 43.0
TWI79G0264 Tripterygium wilfordii HOM05D003821 ORTHO05D004449 2.3e-07 59.7 72 48.6
Sabra10G0014100 Salix brachista HOM05D003821 ORTHO05D004449 3.9e-07 58.9 39 74.4
THA.LOC104820264 Tarenaya hassleriana HOM05D003821 ORTHO05D004449 1.9e-06 56.6 87 44.8
Hma1.2p1_0209F.1_g088610 Hydrangea macrophylla HOM05D003821 ORTHO05D004449 2.5e-06 56.2 57 52.6
ATR0580G132 Amborella trichopoda HOM05D003821 ORTHO05D004449 4.3e-06 55.5 102 41.2
Gohir.D08G138600 Gossypium hirsutum HOM05D003821 ORTHO05D004449 4.3e-06 55.5 85 41.2
Zm00001eb380410 Zea mays HOM05D003821 ORTHO05D004449 4.3e-06 55.5 72 50.0
Aa31LG8G3720 Aethionema arabicum HOM05D003821 ORTHO05D004449 5.6e-06 55.1 78 46.2
Potri.014G131701 Populus trichocarpa HOM05D003821 ORTHO05D004449 5.6e-06 55.1 83 44.6
COL.COLO4_23375 Corchorus olitorius HOM05D003821 ORTHO05D004449 9.6e-06 54.3 44 68.2
FvH4_2g25350 Fragaria vesca HOM05D003821 ORTHO05D004449 9.6e-06 54.3 80 42.5
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 9.6e-06 54.3 33 81.8


User provided reference genes

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