Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold428G51521 Striga asiatica HOM05D007625 ORTHO05D009738 1.2e-146 523.1 254 100.0
Migut.N00092 Erythranthe guttata HOM05D007625 ORTHO05D009738 3.5e-114 415.2 252 79.0
Actinidia00027 Actinidia chinensis HOM05D007625 ORTHO05D009738 8.2e-103 377.5 252 72.2
CSS0007271 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 2.2e-100 369.4 254 69.7
Lsat_1_v5_gn_5_53001 Lactuca sativa HOM05D007625 ORTHO05D009738 6.5e-100 367.9 252 69.8
Thecc.04G284200 Theobroma cacao HOM05D007625 ORTHO05D009738 8.5e-100 367.5 254 70.5
Atru.chr4.2832 Acer truncatum HOM05D007625 ORTHO05D009738 2.5e-99 365.9 253 68.4
SalBow5G0239 Salvia bowleyana HOM05D007625 ORTHO05D009738 4.2e-99 365.2 219 79.0
TWI09G0101 Tripterygium wilfordii HOM05D007625 ORTHO05D009738 4.2e-99 365.2 251 70.5
TAR633G2367 Trochodendron aralioides HOM05D007625 ORTHO05D009738 7.2e-99 364.4 250 71.2
arahy.Tifrunner.gnm1.ann1.96EVWK Arachis hypogaea HOM05D007625 ORTHO05D009738 1.6e-98 363.2 265 64.5
Ciclev10005679m.g Citrus clementina HOM05D007625 ORTHO05D009738 2.1e-98 362.8 251 68.9
DCAR_027078 Daucus carota HOM05D007625 ORTHO05D009738 7.9e-98 360.9 259 67.2
arahy.Tifrunner.gnm1.ann1.QKB3E6 Arachis hypogaea HOM05D007625 ORTHO05D009738 1.0e-97 360.5 265 63.8
MBI18_g04687_MAGBIO Magnolia biondii HOM05D007625 ORTHO05D009738 1.4e-97 360.1 251 68.9
Medtr4g119840 Medicago truncatula HOM05D007625 ORTHO05D009738 2.3e-97 359.4 250 67.6
Gohir.D09G240200 Gossypium hirsutum HOM05D007625 ORTHO05D009738 5.1e-97 358.2 256 66.8
Rhsim02G0009500 Rhododendron simsii HOM05D007625 ORTHO05D009738 6.7e-97 357.8 258 68.6
Duzib212G0442 Durio zibethinus HOM05D007625 ORTHO05D009738 1.5e-96 356.7 254 66.9
Gohir.A09G239300 Gossypium hirsutum HOM05D007625 ORTHO05D009738 2.0e-96 356.3 254 66.1
PGR031G0588 Punica granatum HOM05D007625 ORTHO05D009738 2.5e-96 355.9 252 67.5
Aqoxy2G02997 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 3.3e-96 355.5 257 66.5
Manes.03G194700 Manihot esculenta HOM05D007625 ORTHO05D009738 4.3e-96 355.1 258 68.6
GSVIVG01017755001 Vitis vinifera HOM05D007625 ORTHO05D009738 4.3e-96 355.1 242 69.8
BcaB06g25757 Brassica carinata HOM05D007625 ORTHO05D009738 7.4e-96 354.4 247 68.0
CANSAT78G1499 Cannabis sativa HOM05D007625 ORTHO05D009738 1.3e-95 353.6 252 66.3
Sabra10G0014200 Salix brachista HOM05D007625 ORTHO05D009738 2.2e-95 352.8 253 69.2
Lj4g0027770 Lotus japonicus HOM05D007625 ORTHO05D009738 2.8e-95 352.4 250 67.6
VMungo1215G1867 Vigna mungo HOM05D007625 ORTHO05D009738 3.7e-95 352.1 250 67.6
Lalb_Chr13g0303611 Lupinus albus HOM05D007625 ORTHO05D009738 6.3e-95 351.3 257 67.3
ECA240G3588 Erigeron canadensis HOM05D007625 ORTHO05D009738 1.4e-94 350.1 245 66.5
Prupe.1G137400 Prunus persica HOM05D007625 ORTHO05D009738 1.8e-94 349.7 251 68.1
Glyma.07G247900 Glycine max HOM05D007625 ORTHO05D009738 3.1e-94 349.0 251 65.7
Cc03_g01990 Coffea canephora HOM05D007625 ORTHO05D009738 4.1e-94 348.6 240 68.8
HanXRQChr03g0080751 Helianthus annuus HOM05D007625 ORTHO05D009738 6.9e-94 347.8 249 64.7
QL06p008815 Quercus lobata HOM05D007625 ORTHO05D009738 6.9e-94 347.8 251 66.9
Phvul.003G105100 Phaseolus vulgaris HOM05D007625 ORTHO05D009738 2.0e-93 346.3 251 67.3
Psat4g025880 Pisum sativum HOM05D007625 ORTHO05D009738 2.6e-93 345.9 250 66.4
Ca_21505_v3 Cicer arietinum L. HOM05D007625 ORTHO05D009738 3.4e-93 345.5 250 66.0
MD13G1169000 Malus domestica HOM05D007625 ORTHO05D009738 3.4e-93 345.5 259 64.5
BraA05t22123Z Brassica rapa HOM05D007625 ORTHO05D009738 4.5e-93 345.1 267 63.7
PSO017G7039 Papaver somniferum HOM05D007625 ORTHO05D009738 5.9e-93 344.7 248 68.5
BolC5t33727H Brassica oleracea HOM05D007625 ORTHO05D009738 1.3e-92 343.6 267 62.5
Sp3g14890 Schrenkiella parvula HOM05D007625 ORTHO05D009738 1.7e-92 343.2 252 66.7
CSS0032939 Camellia sinensis var. sinensis HOM05D007625 ORTHO05D009738 2.2e-92 342.8 273 62.6
RcHm_v2.0_Chr4g0422131 Rosa chinensis HOM05D007625 ORTHO05D009738 2.9e-92 342.4 251 64.1
Thhalv10021369m.g Eutrema salsugineum HOM05D007625 ORTHO05D009738 3.8e-92 342.0 250 66.8
FAN07G2640 Fragaria x ananassa HOM05D007625 ORTHO05D009738 6.5e-92 341.3 250 64.0
TPR.G3171 Trifolium pratense HOM05D007625 ORTHO05D009738 6.5e-92 341.3 254 65.4
FvH4_4g17960 Fragaria vesca HOM05D007625 ORTHO05D009738 4.2e-91 338.6 250 63.6
AL3G29430 Arabidopsis lyrata HOM05D007625 ORTHO05D009738 7.2e-91 337.8 250 64.0
C05p49750 Brassica napus HOM05D007625 ORTHO05D009738 7.2e-91 337.8 260 63.8
CARHR091770 Cardamine hirsuta HOM05D007625 ORTHO05D009738 9.4e-91 337.4 250 65.2
Hund20557 Selenicereus undatus HOM05D007625 ORTHO05D009738 9.4e-91 337.4 258 65.9
Gorai.006G263200 Gossypium raimondii HOM05D007625 ORTHO05D009738 6.1e-90 334.7 237 66.2
Potri.010G024900 Populus trichocarpa HOM05D007625 ORTHO05D009738 2.3e-89 332.8 242 68.6
Rhsim02G0010500 Rhododendron simsii HOM05D007625 ORTHO05D009738 1.5e-88 330.1 241 67.6
ATR0796G164 Amborella trichopoda HOM05D007625 ORTHO05D009738 1.7e-87 326.6 248 64.1
BcaNung06438 Brassica carinata HOM05D007625 ORTHO05D009738 4.8e-87 325.1 222 67.6
Dinv44384 Davidia involucrata HOM05D007625 ORTHO05D005073 4.1e-86 322.0 247 63.2
AT3G16565 Arabidopsis thaliana HOM05D007625 ORTHO05D009738 2.6e-85 319.3 283 57.6
FAN12G4294 Fragaria x ananassa HOM05D007625 ORTHO05D009738 5.9e-85 318.2 242 62.4
FAN12G1696 Fragaria x ananassa HOM05D007625 ORTHO05D009738 3.8e-84 315.5 245 60.4
Eucgr.B01310 Eucalyptus grandis HOM05D007625 ORTHO05D009738 6.5e-84 314.7 238 66.4
FAN17G2144 Fragaria x ananassa HOM05D007625 ORTHO05D009738 6.5e-84 314.7 276 56.5
Os01g0120400 Oryza sativa ssp. japonica HOM05D007625 ORTHO05D009738 8.5e-84 314.3 249 59.8
Hma1.2p1_1567F.1_g291060 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 2.5e-83 312.8 212 70.8
vmacro15237 Vaccinium macrocarpon HOM05D007625 ORTHO05D009738 3.3e-80 302.4 247 61.1
Hma1.2p1_0078F.1_g040640 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 4.4e-80 302.0 208 70.2
Pp3c1_7890 Physcomitrium patens HOM05D007625 ORTHO05D009738 3.2e-75 285.8 250 58.0
Lj3A816T27 Lonicera japonica HOM05D007625 ORTHO05D009738 8.0e-74 281.2 219 65.3
Nn3g21433 Nelumbo nucifera HOM05D007625 ORTHO05D009738 2.0e-72 276.6 250 58.0
SMO356G0461 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 1.8e-70 270.0 249 53.8
CDE12G0709 Ceratophyllum demersum HOM05D007625 ORTHO05D009738 2.9e-68 262.7 248 58.9
Cpa.g.sc16.167 Carica papaya HOM05D007625 ORTHO05D009738 5.5e-67 258.5 201 65.2
SMO002G0002 Selaginella moellendorffii HOM05D007625 ORTHO05D009738 5.5e-67 258.5 238 54.6
Lj3A819G38 Lonicera japonica HOM05D007625 ORTHO05D009738 9.4e-67 257.7 275 53.8
AUR62035873 Chenopodium quinoa HOM05D007625 ORTHO05D009738 1.8e-62 243.4 194 62.9
AagrBONN_evm.TU.Sc2ySwM_228.2358 Anthoceros agrestis HOM05D007625 ORTHO05D009738 2.4e-62 243.0 181 63.0
Aa31LG8G3700 Aethionema arabicum HOM05D007625 ORTHO05D009738 3.1e-62 242.7 266 51.9
Carub.0003s1629 Capsella rubella HOM05D007625 ORTHO05D009738 2.7e-61 239.6 160 66.2
Glyma.17G026200 Glycine max HOM05D007625 ORTHO05D009738 3.8e-60 235.7 351 41.3
Sc19g0005180 Simmondsia chinensis HOM05D007625 ORTHO05D009738 2.0e-53 213.4 256 48.8
Zm00001eb334800 Zea mays HOM05D007625 ORTHO05D009738 1.2e-50 204.1 176 57.4
MCO16G322 Micromonas commoda HOM05D007625 ORTHO05D009738 3.1e-49 199.5 258 41.1
EL10Ac3g06592 Beta vulgaris HOM05D007625 ORTHO05D009738 5.8e-48 195.3 251 47.0
unitig_0.g621 Utricularia gibba HOM05D007625 ORTHO05D009738 6.8e-33 145.2 144 56.2
BcaB03g15776 Brassica carinata HOM05D007625 ORTHO05D009738 8.6e-28 128.3 108 63.0
Hma1.2p1_0785F.1_g217410 Hydrangea macrophylla HOM05D007625 ORTHO05D009738 4.9e-23 112.5 71 69.0
Medtr4g123440 Medicago truncatula HOM05D007625 ORTHO05D009738 1.4e-17 94.4 118 47.5
Glyma.19G060100 Glycine max HOM05D007625 ORTHO05D009738 1.7e-15 87.4 83 56.6
Cpa.g.c47082 Carica papaya HOM05D007625 ORTHO05D009738 2.2e-15 87.0 82 58.5
Aqoxy2G02999 Aquilegia oxysepala HOM05D007625 ORTHO05D009738 2.9e-15 86.7 68 58.8
MD16G1169600 Malus domestica HOM05D007625 ORTHO05D009738 1.5e-11 74.3 60 53.3
Ciclev10030624m.g Citrus clementina HOM05D001816 ORTHO05D002001 2.0e-08 63.9 228 24.6
Actinidia24519 Actinidia chinensis HOM05D001816 ORTHO05D002001 3.4e-08 63.2 226 26.5
Ca_19037_v3 Cicer arietinum L. HOM05D001816 ORTHO05D002001 3.4e-08 63.2 252 23.8
RcHm_v2.0_Chr4g0446511 Rosa chinensis HOM05D001816 ORTHO05D002001 4.5e-08 62.8 228 25.4
BcaB04g17263 Brassica carinata HOM05D001816 ORTHO05D002001 5.8e-08 62.4 226 24.3
Rhsim03G0224600 Rhododendron simsii HOM05D001816 ORTHO05D002001 5.8e-08 62.4 226 23.9
CiPaw.05G167200 Carya illinoinensis HOM05D001816 ORTHO05D002001 7.6e-08 62.0 226 23.9
ECA236G4276 Erigeron canadensis HOM05D001816 ORTHO05D002001 7.6e-08 62.0 228 25.0
C03p89530 Brassica napus HOM05D001816 ORTHO05D002001 9.9e-08 61.6 209 24.4
Sp1g37060 Schrenkiella parvula HOM05D001816 ORTHO05D002001 9.9e-08 61.6 226 24.3
AL1G57820 Arabidopsis lyrata HOM05D001816 ORTHO05D002001 1.7e-07 60.8 226 23.9
AT1G50200 Arabidopsis thaliana HOM05D001816 ORTHO05D002001 2.2e-07 60.5 226 23.9
CARHR040290 Cardamine hirsuta HOM05D001816 ORTHO05D002001 2.2e-07 60.5 240 24.2
ClCG10G011880 Citrullus lanatus HOM05D001816 ORTHO05D002001 2.2e-07 60.5 226 21.7
Actinidia27035 Actinidia chinensis HOM05D001816 ORTHO05D002001 2.9e-07 60.1 96 36.5
Sed0006167 Sechium edule HOM05D001816 ORTHO05D002001 2.9e-07 60.1 226 21.7
BcaC01g01218 Brassica carinata HOM05D001816 ORTHO05D002001 3.8e-07 59.7 209 23.9
Carub.0001s3933 Capsella rubella HOM05D001816 ORTHO05D002001 3.8e-07 59.7 226 23.5
Zm00001eb409500 Zea mays HOM05D001816 ORTHO05D002001 3.8e-07 59.7 231 23.8
BcaC08g43202 Brassica carinata HOM05D001816 ORTHO05D002001 4.9e-07 59.3 226 23.5
AUR62017503 Chenopodium quinoa HOM05D001816 ORTHO05D002001 6.4e-07 58.9 226 23.9
FAN17G1219 Fragaria x ananassa HOM05D001816 ORTHO05D002001 6.4e-07 58.9 228 25.0
MBI15_g27187_MAGBIO Magnolia biondii HOM05D001816 ORTHO05D002001 6.4e-07 58.9 226 23.0
Nn8g39979 Nelumbo nucifera HOM05D001816 ORTHO05D002001 6.4e-07 58.9 226 23.5
Nn2g12439 Nelumbo nucifera HOM05D001816 ORTHO05D002001 8.4e-07 58.5 226 22.6
unitig_52.g17019 Utricularia gibba HOM05D001816 ORTHO05D002001 8.4e-07 58.5 226 24.8
vmacro06369 Vaccinium macrocarpon HOM05D001816 ORTHO05D002001 8.4e-07 58.5 96 34.4
AUR62028574 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.1e-06 58.2 226 23.9
Cc02_g00090 Coffea canephora HOM05D001816 ORTHO05D002001 1.1e-06 58.2 226 24.8
Lj3g0010854 Lotus japonicus HOM05D001816 ORTHO05D002001 1.1e-06 58.2 234 23.1
Lj3g0027168 Lotus japonicus HOM05D001816 ORTHO05D002001 1.1e-06 58.2 234 23.1
Lalb_Chr03g0024831 Lupinus albus HOM05D001816 ORTHO05D002001 1.1e-06 58.2 253 23.3
Medtr4g074640 Medicago truncatula HOM05D001816 ORTHO05D002001 1.1e-06 58.2 251 23.1
PGR044G0467 Punica granatum HOM05D001816 ORTHO05D002001 1.1e-06 58.2 228 23.7
SalBow2G2560 Salvia bowleyana HOM05D001816 ORTHO05D002001 1.1e-06 58.2 226 24.3
Sed0023453 Sechium edule HOM05D001816 ORTHO05D002001 1.1e-06 58.2 226 21.2
BcaB07g33474 Brassica carinata HOM05D001816 ORTHO05D002001 1.4e-06 57.8 226 23.5
CsaV3_3G031480 Cucumis sativus L. HOM05D001816 ORTHO05D002001 1.4e-06 57.8 226 20.4
DCAR_020432 Daucus carota HOM05D001816 ORTHO05D002001 1.4e-06 57.8 228 23.7
Peaxi162Scf00133g00523 Petunia axillaris HOM05D001816 ORTHO05D002001 1.4e-06 57.8 224 26.8
Sed0023914 Sechium edule HOM05D001816 ORTHO05D002001 1.4e-06 57.8 233 21.9
BolC3t21267H Brassica oleracea HOM05D001816 ORTHO05D002001 1.9e-06 57.4 209 23.4
AUR62033529 Chenopodium quinoa HOM05D001816 ORTHO05D002001 1.9e-06 57.4 226 23.9
Manes.04G066500 Manihot esculenta HOM05D001816 ORTHO05D002001 1.9e-06 57.4 226 22.1
Psat7g173440 Pisum sativum HOM05D001816 ORTHO05D002001 1.9e-06 57.4 251 22.3
Potri.005G094300 Populus trichocarpa HOM05D001816 ORTHO05D002001 1.9e-06 57.4 226 23.0
THA.LOC104815233 Tarenaya hassleriana HOM05D001816 ORTHO05D002001 1.9e-06 57.4 226 23.5
A08p03280 Brassica napus HOM05D001816 ORTHO05D002001 2.4e-06 57.0 96 34.4
BraA08t32361Z Brassica rapa HOM05D001816 ORTHO05D002001 2.4e-06 57.0 96 34.4
Gohir.D02G187500 Gossypium hirsutum HOM05D001816 ORTHO05D002001 2.4e-06 57.0 96 34.4
Gorai.005G210000 Gossypium raimondii HOM05D001816 ORTHO05D002001 2.4e-06 57.0 96 34.4
Oeu028987.2 Olea europaea HOM05D001816 ORTHO05D002001 2.4e-06 57.0 258 22.1
Aa31LG2G15270 Aethionema arabicum HOM05D001816 ORTHO05D002001 3.2e-06 56.6 216 25.5
Haze_00547 Corylus avellana HOM05D001816 ORTHO05D002001 3.2e-06 56.6 96 34.4
Dinv29120 Davidia involucrata HOM05D001816 ORTHO05D002001 3.2e-06 56.6 226 23.5
GSVIVG01012030001 Vitis vinifera HOM05D001816 ORTHO05D002001 4.2e-06 56.2 233 24.0
AagrBONN_evm.TU.Sc2ySwM_228.5790 Anthoceros agrestis HOM05D001816 ORTHO05D002001 5.5e-06 55.8 236 26.3
Migut.F00930 Erythranthe guttata HOM05D001816 ORTHO05D002001 5.5e-06 55.8 226 22.6
FvH4_4g36780 Fragaria vesca HOM05D001816 ORTHO05D002001 5.5e-06 55.8 228 23.7
FAN07G1183 Fragaria x ananassa HOM05D001816 ORTHO05D002001 5.5e-06 55.8 228 23.7
FAN12G0939 Fragaria x ananassa HOM05D001816 ORTHO05D002001 5.5e-06 55.8 228 23.7
AagrBONN_evm.TU.Sc2ySwM_344.917 Anthoceros agrestis HOM05D001816 ORTHO05D002001 7.1e-06 55.5 236 25.8
A05p20290 Brassica napus HOM05D001816 ORTHO05D002001 7.1e-06 55.5 96 33.3
BraA05t20939Z Brassica rapa HOM05D001816 ORTHO05D002001 7.1e-06 55.5 96 33.3
Actinidia08767 Actinidia chinensis HOM05D001816 ORTHO05D002001 9.3e-06 55.1 96 34.4
Hma1.2p1_0419F.1_g149540 Hydrangea macrophylla HOM05D001816 ORTHO05D002001 9.3e-06 55.1 105 30.5


User provided reference genes

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