Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 3.5e-149 531.6 261 100.0
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 6.4e-103 377.9 303 68.3
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 3.9e-100 368.6 341 62.8
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 4.5e-80 302.0 315 55.6
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 5.7e-75 285.0 313 55.0
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 3.1e-73 279.3 313 53.0
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.0e-64 250.0 319 49.2
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 2.5e-62 243.0 312 49.4
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 5.5e-62 241.9 252 56.3
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 8.0e-61 238.0 293 50.2
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.4e-60 237.3 251 55.0
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.3e-60 236.5 270 53.0
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 2.3e-60 236.5 259 54.1
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 3.0e-60 236.1 272 52.6
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 5.2e-60 235.3 299 49.5
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 6.7e-60 235.0 247 56.3
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 8.8e-60 234.6 267 53.6
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 8.8e-60 234.6 230 57.4
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 8.8e-60 234.6 297 49.5
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 8.8e-60 234.6 248 56.0
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 8.8e-60 234.6 248 56.0
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.1e-59 234.2 261 52.9
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 1.5e-59 233.8 250 56.0
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.5e-59 233.8 299 49.8
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 4.4e-59 232.3 295 50.2
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.7e-59 231.9 298 48.7
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 7.5e-59 231.5 255 52.9
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 9.7e-59 231.1 246 55.3
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 9.7e-59 231.1 246 54.9
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 1.3e-58 230.7 247 55.1
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 1.7e-58 230.3 297 48.8
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 2.2e-58 229.9 281 50.9
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 2.2e-58 229.9 267 52.1
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 2.2e-58 229.9 280 51.8
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 2.8e-58 229.6 299 48.5
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 4.8e-58 228.8 261 52.1
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.2e-58 228.0 289 49.5
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.1e-57 227.6 289 49.5
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.1e-57 227.6 289 49.5
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.8e-57 226.9 259 52.5
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.8e-57 226.9 246 54.5
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 2.4e-57 226.5 285 49.1
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 3.1e-57 226.1 246 54.9
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 3.1e-57 226.1 305 47.5
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 3.1e-57 226.1 247 53.4
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 4.1e-57 225.7 306 47.4
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 5.3e-57 225.3 247 53.8
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 5.3e-57 225.3 306 47.4
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 7.0e-57 224.9 251 53.4
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 9.1e-57 224.6 256 52.0
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 1.2e-56 224.2 260 53.5
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.6e-56 223.8 250 52.4
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.6e-56 223.8 306 47.4
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.6e-56 223.8 251 53.4
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 1.6e-56 223.8 259 51.4
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 2.7e-56 223.0 241 53.5
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 2.7e-56 223.0 272 50.0
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 4.5e-56 222.2 251 52.2
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 5.9e-56 221.9 265 51.7
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 7.7e-56 221.5 322 44.4
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 7.7e-56 221.5 271 49.8
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.0e-55 221.1 284 49.3
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.0e-55 221.1 249 53.0
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.0e-55 221.1 246 53.3
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.7e-55 220.3 270 51.1
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 2.2e-55 219.9 281 49.1
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 2.2e-55 219.9 263 51.7
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.2e-55 219.9 275 48.7
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.9e-55 219.5 270 48.9
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 3.8e-55 219.2 284 48.9
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.8e-55 219.2 259 51.4
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 3.8e-55 219.2 246 52.8
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 5.0e-55 218.8 254 51.2
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 5.0e-55 218.8 268 48.1
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 5.0e-55 218.8 257 50.6
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 6.5e-55 218.4 254 51.2
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 6.5e-55 218.4 249 53.0
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 8.5e-55 218.0 266 49.6
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.1e-54 217.6 255 49.8
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.1e-54 217.6 234 53.8
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.5e-54 217.2 333 44.4
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 4.2e-54 215.7 250 52.0
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 5.5e-54 215.3 261 51.7
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 7.2e-54 214.9 268 47.8
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.6e-53 213.8 247 51.4
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.1e-53 213.4 250 48.4
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 3.6e-53 212.6 255 49.0
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 4.7e-53 212.2 258 48.4
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 4.7e-53 212.2 246 51.2
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 6.1e-53 211.8 273 47.3
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 1.4e-52 210.7 270 47.4
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 2.3e-52 209.9 247 51.0
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 6.8e-52 208.4 213 60.1
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.2e-51 207.6 248 48.4
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.2e-50 203.4 277 45.5
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.8e-50 203.0 296 43.9
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.8e-49 200.3 301 42.9
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 7.7e-48 194.9 386 39.1
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.0e-44 184.5 264 45.5
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.0e-44 184.5 218 53.2
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.8e-44 183.7 243 46.5
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 2.0e-43 180.3 422 35.8
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 7.5e-43 178.3 259 40.9
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 7.5e-43 178.3 216 51.4
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 4.1e-41 172.6 302 41.7
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 9.2e-41 171.4 113 77.0
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.2e-40 171.0 225 46.7
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 2.0e-40 170.2 133 67.7
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 7.7e-40 168.3 244 41.4
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.0e-39 167.9 111 75.7
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 2.3e-39 166.8 109 77.1
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 8.6e-39 164.9 251 43.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.9e-38 163.7 129 66.7
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 3.3e-38 162.9 139 62.6
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 4.3e-38 162.5 112 71.4
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 5.6e-38 162.2 219 44.7
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 5.6e-38 162.2 132 65.2
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 7.3e-38 161.8 112 72.3
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.6e-37 159.5 148 60.1
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 8.0e-37 158.3 109 71.6
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.5e-35 154.1 112 71.4
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 9.8e-35 151.4 128 62.5
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 1.3e-34 151.0 238 42.0
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.0e-31 141.4 92 78.3
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 3.3e-30 136.3 113 59.3
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 4.3e-30 136.0 242 35.1
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 3.6e-29 132.9 80 82.5
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.4e-28 131.0 100 66.0
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.4e-28 131.0 100 66.0
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.4e-28 131.0 100 66.0
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.4e-28 131.0 100 66.0
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 6.8e-28 128.6 248 33.5
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 1.5e-27 127.5 252 35.3
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 8.3e-26 121.7 76 76.3
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.1e-25 121.3 193 40.4
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 1.7e-23 114.0 67 83.6
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.9e-22 110.5 63 81.0
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 3.6e-21 106.3 183 42.6
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.4e-20 104.4 117 54.7
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.4e-20 104.4 62 72.6
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 8.9e-20 101.7 235 28.9
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.1e-17 92.8 239 28.5
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 9.2e-17 91.7 239 29.7
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.2e-16 91.3 47 87.2
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.6e-16 90.9 113 42.5
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.5e-16 89.7 59 67.8
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 5.1e-15 85.9 47 78.7
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 8.6e-15 85.1 99 49.5
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 7.3e-14 82.0 47 76.6
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.2e-13 81.3 48 70.8
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.1e-13 80.5 59 57.6
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 4.0e-12 76.3 69 52.2
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.3e-10 71.2 239 27.6
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.9e-10 70.1 47 66.0
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.2e-08 64.7 93 35.5
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 1.6e-08 64.3 29 93.1
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.1e-08 63.9 61 54.1
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.6e-08 62.8 29 89.7
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 3.3e-06 56.6 29 75.9


User provided reference genes

Program Settings