Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold423G51452 Striga asiatica HOM05D002102 ORTHO05D004119 8.6e-166 587.0 322 100.0
PGSC0003DMG400013657 Solanum tuberosum HOM05D002102 ORTHO05D004119 7.5e-53 211.8 351 45.9
TAR629G0218 Trochodendron aralioides HOM05D002102 ORTHO05D004119 1.7e-52 210.7 346 43.6
Cc09_g04630 Coffea canephora HOM05D002102 ORTHO05D004119 2.2e-52 210.3 347 43.5
Migut.M02035 Erythranthe guttata HOM05D002102 ORTHO05D004119 3.7e-52 209.5 386 43.8
Sopen02g026810 Solanum pennellii HOM05D002102 ORTHO05D004119 6.4e-52 208.8 346 45.4
Solyc02g082150.1 Solanum lycopersicum HOM05D002102 ORTHO05D004119 1.4e-51 207.6 346 45.1
CAN.G809.14 Capsicum annuum HOM05D002102 ORTHO05D004119 1.9e-48 197.2 314 45.2
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.6e-47 194.1 364 41.2
Solyc10g005190.1 Solanum lycopersicum HOM05D002102 ORTHO05D004119 1.1e-46 191.4 330 42.1
Nitab4.5_0012748g0010 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.4e-46 191.0 308 43.2
Cfa001163 Carpinus fangiana HOM05D002102 ORTHO05D004119 2.3e-46 190.3 345 40.3
PGSC0003DMG400011261 Solanum tuberosum HOM05D002102 ORTHO05D004119 3.1e-46 189.9 315 43.8
Sopen10g001180 Solanum pennellii HOM05D002102 ORTHO05D004119 4.0e-46 189.5 288 46.5
Nitab4.5_0007687g0030 Nicotiana tabacum HOM05D002102 ORTHO05D004119 6.8e-46 188.7 363 40.2
Oeu025642.1 Olea europaea HOM05D002102 ORTHO05D004119 6.8e-46 188.7 284 46.1
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 8.9e-46 188.3 355 46.5
CiPaw.09G140500 Carya illinoinensis HOM05D002102 ORTHO05D004119 2.0e-45 187.2 345 39.4
QL11p010813 Quercus lobata HOM05D002102 ORTHO05D004119 1.7e-44 184.1 349 42.7
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 2.9e-44 183.3 310 42.3
Prupe.4G120700 Prunus persica HOM05D002102 ORTHO05D004119 2.9e-44 183.3 341 40.8
Peaxi162Scf00313g00049 Petunia axillaris HOM05D002102 ORTHO05D004119 1.1e-43 181.4 308 42.9
Sabra01G0052600 Salix brachista HOM05D002102 ORTHO05D004119 2.4e-43 180.3 339 39.2
Cpa.g.sc1291.1 Carica papaya HOM05D002102 ORTHO05D004119 4.1e-43 179.5 328 40.5
Manes.16G059800 Manihot esculenta HOM05D002102 ORTHO05D004119 5.4e-43 179.1 337 39.5
Hma1.2p1_0166F.1_g073520 Hydrangea macrophylla HOM05D002102 ORTHO05D004119 1.6e-42 177.6 358 41.1
Lsat_1_v5_gn_2_59800 Lactuca sativa HOM05D002102 ORTHO05D004119 2.7e-42 176.8 318 41.8
Potri.001G074300 Populus trichocarpa HOM05D002102 ORTHO05D004119 6.0e-42 175.6 347 40.1
COL.COLO4_03689 Corchorus olitorius HOM05D002102 ORTHO05D004119 1.3e-41 174.5 368 36.4
Thecc.01G106700 Theobroma cacao HOM05D002102 ORTHO05D004119 2.3e-41 173.7 357 38.4
TWI63G0772 Tripterygium wilfordii HOM05D002102 ORTHO05D004119 3.0e-41 173.3 343 37.3
Lsat_1_v5_gn_9_100101 Lactuca sativa HOM05D002102 ORTHO05D004119 3.9e-41 172.9 328 40.5
Ciclev10015737m.g Citrus clementina HOM05D002102 ORTHO05D004119 1.1e-40 171.4 371 36.9
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 1.5e-40 171.0 333 39.0
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 1.5e-40 171.0 322 40.7
Sed0008960 Sechium edule HOM05D002102 ORTHO05D004119 1.5e-40 171.0 351 36.5
FvH4_3g13340 Fragaria vesca HOM05D002102 ORTHO05D004119 1.9e-40 170.6 341 40.2
CANSAT35G1778 Cannabis sativa HOM05D002102 ORTHO05D004119 3.3e-40 169.9 364 40.1
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.3e-40 169.9 341 40.2
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 4.3e-40 169.5 341 40.2
HanXRQChr02g0036451 Helianthus annuus HOM05D002102 ORTHO05D004119 4.3e-40 169.5 336 39.3
ECA238G3437 Erigeron canadensis HOM05D002102 ORTHO05D004119 7.3e-40 168.7 276 41.3
TWI15G0700 Tripterygium wilfordii HOM05D002102 ORTHO05D004119 7.3e-40 168.7 343 36.7
Aqoxy1G01356 Aquilegia oxysepala HOM05D002102 ORTHO05D004119 9.6e-40 168.3 340 37.1
MELO3C002390.2 Cucumis melo HOM05D002102 ORTHO05D004119 9.6e-40 168.3 344 37.5
HanXRQChr14g0439021 Helianthus annuus HOM05D002102 ORTHO05D004119 1.2e-39 167.9 315 39.4
CsaV3_1G009970 Cucumis sativus L. HOM05D002102 ORTHO05D004119 1.6e-39 167.5 350 37.4
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 1.4e-38 164.5 342 36.8
Potri.003G156700 Populus trichocarpa HOM05D002102 ORTHO05D004119 1.4e-38 164.5 340 38.5
Gorai.003G045000 Gossypium raimondii HOM05D002102 ORTHO05D004119 3.1e-38 163.3 350 39.4
ECA246G4308 Erigeron canadensis HOM05D002102 ORTHO05D004119 4.0e-38 162.9 279 41.6
RcHm_v2.0_Chr5g0021811 Rosa chinensis HOM05D002102 ORTHO05D004119 4.0e-38 162.9 341 39.9
VMungo0251G3352 Vigna mungo HOM05D002102 ORTHO05D004119 4.0e-38 162.9 319 37.0
Eucgr.E04329 Eucalyptus grandis HOM05D002102 ORTHO05D004119 8.9e-38 161.8 320 37.5
Actinidia34699 Actinidia chinensis HOM05D002102 ORTHO05D004119 2.0e-37 160.6 313 36.1
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.0e-37 160.6 342 39.8
Gohir.D03G044000 Gossypium hirsutum HOM05D002102 ORTHO05D004119 2.0e-37 160.6 353 38.8
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 3.4e-37 159.8 341 39.3
Medtr8g070690 Medicago truncatula HOM05D002102 ORTHO05D004119 7.6e-37 158.7 327 35.8
Gohir.A02G132600 Gossypium hirsutum HOM05D002102 ORTHO05D004119 1.7e-36 157.5 348 39.4
MD10G1224500 Malus domestica HOM05D002102 ORTHO05D004119 2.2e-36 157.1 329 37.7
TPR.G19830 Trifolium pratense HOM05D002102 ORTHO05D004119 3.8e-36 156.4 328 36.0
MBI02_g17885_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D004119 6.4e-36 155.6 335 36.4
Phvul.003G275300 Phaseolus vulgaris HOM05D002102 ORTHO05D004119 8.4e-36 155.2 279 38.0
Glyma.15G155100 Glycine max HOM05D002102 ORTHO05D004119 1.4e-35 154.5 339 35.4
Glyma.16G094200 Glycine max HOM05D002102 ORTHO05D004119 1.9e-35 154.1 234 42.3
PGR042G1552 Punica granatum HOM05D002102 ORTHO05D004119 4.2e-35 152.9 298 39.3
Lalb_Chr20g0114391 Lupinus albus HOM05D002102 ORTHO05D004119 5.4e-35 152.5 249 40.2
Psat0s2609g0080 Pisum sativum HOM05D002102 ORTHO05D004119 1.2e-34 151.4 317 35.3
Haze_05189 Corylus avellana HOM05D002102 ORTHO05D004119 1.0e-33 148.3 351 35.6
THA.LOC104811927 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 2.3e-33 147.1 359 35.1
ClCG03G004080 Citrullus lanatus HOM05D002102 ORTHO05D004119 3.9e-33 146.4 348 33.9
Lj4g0021437 Lotus japonicus HOM05D002102 ORTHO05D004119 3.9e-33 146.4 330 34.5
PSO541G6086 Papaver somniferum HOM05D002102 ORTHO05D004119 4.3e-32 142.9 338 33.4
Haze_05200 Corylus avellana HOM05D002102 ORTHO05D004119 1.3e-31 141.4 240 40.8
PSO675G5300 Papaver somniferum HOM05D002102 ORTHO05D004119 1.3e-31 141.4 339 33.3
Cfa001162 Carpinus fangiana HOM05D002102 ORTHO05D004119 4.8e-31 139.4 226 42.9
Glyma.09G047700 Glycine max HOM05D002102 ORTHO05D004119 4.8e-31 139.4 340 35.6
CARHR227010 Cardamine hirsuta HOM05D002102 ORTHO05D004119 4.0e-30 136.3 368 35.3
AT4G20190 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 5.3e-30 136.0 370 34.1
Sc17g0004360 Simmondsia chinensis HOM05D002102 ORTHO05D004119 1.5e-29 134.4 360 35.6
Ca_22533_v3 Cicer arietinum L. HOM05D002102 ORTHO05D004119 2.0e-29 134.0 245 39.2
BcaNung03712 Brassica carinata HOM05D002102 ORTHO05D004119 2.6e-29 133.7 372 33.1
BcaNung03713 Brassica carinata HOM05D002102 ORTHO05D004119 4.5e-29 132.9 374 32.9
VMungo1309G0754 Vigna mungo HOM05D002102 ORTHO05D004119 5.8e-29 132.5 345 32.8
Lalb_Chr18g0051891 Lupinus albus HOM05D002102 ORTHO05D004119 9.9e-29 131.7 345 32.8
Aa31LG6G2610 Aethionema arabicum HOM05D002102 ORTHO05D004119 1.3e-28 131.3 357 31.1
AL7G33650 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 2.2e-28 130.6 375 35.2
Phvul.009G245100 Phaseolus vulgaris HOM05D002102 ORTHO05D004119 2.9e-28 130.2 343 34.1
Lj6g0016862 Lotus japonicus HOM05D002102 ORTHO05D004119 4.9e-28 129.4 352 34.1
Carub.0007s2095 Capsella rubella HOM05D002102 ORTHO05D004119 8.4e-28 128.6 383 34.2
Thhalv10027261m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 8.4e-28 128.6 381 30.2
BcaC09g51330 Brassica carinata HOM05D002102 ORTHO05D004119 1.1e-27 128.3 361 32.4
A08p14680 Brassica napus HOM05D002102 ORTHO05D004119 1.1e-27 128.3 365 31.2
BolC1t01381H Brassica oleracea HOM05D002102 ORTHO05D004119 1.1e-27 128.3 361 32.4
BraA08t33455Z Brassica rapa HOM05D002102 ORTHO05D004119 1.1e-27 128.3 365 31.2
A01p11930 Brassica napus HOM05D002102 ORTHO05D004119 1.4e-27 127.9 367 31.6
BraA01t01135Z Brassica rapa HOM05D002102 ORTHO05D004119 1.4e-27 127.9 367 31.6
BcaC01g00659 Brassica carinata HOM05D002102 ORTHO05D004119 1.9e-27 127.5 366 31.7
C03p82830 Brassica napus HOM05D002102 ORTHO05D004119 1.9e-27 127.5 366 31.7
BolC3t20564H Brassica oleracea HOM05D002102 ORTHO05D004119 1.9e-27 127.5 366 31.7
C01p14170 Brassica napus HOM05D002102 ORTHO05D004119 4.2e-27 126.3 361 32.7
THA.LOC104813354 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 4.2e-27 126.3 380 36.6
Lalb_Chr05g0229071 Lupinus albus HOM05D002102 ORTHO05D004119 1.2e-26 124.8 275 36.7
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 3.5e-26 123.2 358 32.7
BcaB03g11661 Brassica carinata HOM05D002102 ORTHO05D004119 6.0e-26 122.5 360 31.4
Sp7g18610 Schrenkiella parvula HOM05D002102 ORTHO05D004119 6.0e-26 122.5 379 32.5
Ca_02410_v3 Cicer arietinum L. HOM05D002102 ORTHO05D004119 7.9e-26 122.1 349 32.4
Psat1g152040 Pisum sativum HOM05D002102 ORTHO05D004119 7.9e-26 122.1 347 34.0
DCAR_004361 Daucus carota HOM05D002102 ORTHO05D004119 1.8e-25 120.9 315 33.0
Medtr2g437600 Medicago truncatula HOM05D002102 ORTHO05D004119 5.1e-25 119.4 347 32.9
HPP92_015983 Vanilla planifolia HOM05D002102 ORTHO05D004119 1.5e-24 117.9 230 37.8
Thhalv10000939m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 2.8e-23 113.6 348 31.3
EL10Ac4g09794 Beta vulgaris HOM05D002102 ORTHO05D004119 2.4e-22 110.5 322 31.4
arahy.Tifrunner.gnm1.ann1.K04KZH Arachis hypogaea HOM05D002102 ORTHO05D004119 4.0e-22 109.8 344 31.7
TPR.G28833 Trifolium pratense HOM05D002102 ORTHO05D004119 4.0e-22 109.8 363 33.3
Sp2g09470 Schrenkiella parvula HOM05D002102 ORTHO05D004119 9.0e-22 108.6 346 30.6
CARHR178240 Cardamine hirsuta HOM05D002102 ORTHO05D004119 2.0e-21 107.5 298 33.2
BcaB06g28826 Brassica carinata HOM05D002102 ORTHO05D004119 2.6e-21 107.1 183 38.3
BcaC02g07749 Brassica carinata HOM05D002102 ORTHO05D004119 2.6e-21 107.1 183 38.3
ATR0602G086 Amborella trichopoda HOM05D002102 ORTHO05D004119 3.4e-21 106.7 219 37.0
CARHR129060 Cardamine hirsuta HOM05D002102 ORTHO05D004119 4.5e-21 106.3 186 39.8
Carub.0001s2919 Capsella rubella HOM05D002102 ORTHO05D004119 5.8e-21 105.9 192 40.1
Aa31LG6G12270 Aethionema arabicum HOM05D002102 ORTHO05D004119 7.6e-21 105.5 187 39.0
AT1G30850 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 1.7e-20 104.4 192 38.5
BolC4t27882H Brassica oleracea HOM05D002102 ORTHO05D004119 1.7e-20 104.4 183 37.2
BraA06t27575Z Brassica rapa HOM05D002102 ORTHO05D004119 1.7e-20 104.4 354 30.8
C04p64060 Brassica napus HOM05D002102 ORTHO05D004119 2.9e-20 103.6 183 37.2
Aa31LG10G6430 Aethionema arabicum HOM05D002102 ORTHO05D004119 4.9e-20 102.8 185 38.4
AL1G45140 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 4.9e-20 102.8 192 39.1
A06p47020 Brassica napus HOM05D002102 ORTHO05D004119 6.4e-20 102.4 352 29.5
AL4G30920 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 8.4e-20 102.1 183 38.8
AT5G44660 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 8.4e-20 102.1 202 38.1
BcaC06g31599 Brassica carinata HOM05D002102 ORTHO05D004119 8.4e-20 102.1 350 30.0
A04p26640 Brassica napus HOM05D002102 ORTHO05D004119 8.4e-20 102.1 183 37.2
arahy.Tifrunner.gnm1.ann1.G5LJZZ Arachis hypogaea HOM05D002102 ORTHO05D004119 1.1e-19 101.7 342 30.7
BcaB02g09499 Brassica carinata HOM05D002102 ORTHO05D004119 1.1e-19 101.7 190 37.4
Thhalv10017016m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 1.1e-19 101.7 187 37.4
C07p27550 Brassica napus HOM05D002102 ORTHO05D004119 1.4e-19 101.3 354 30.2
BolC7t43286H Brassica oleracea HOM05D002102 ORTHO05D004119 1.4e-19 101.3 354 30.2
BraA04t18169Z Brassica rapa HOM05D002102 ORTHO05D004119 1.9e-19 100.9 183 37.2
BraA09t39060Z Brassica rapa HOM05D002102 ORTHO05D004119 2.4e-19 100.5 188 37.8
AUR62007001 Chenopodium quinoa HOM05D002102 ORTHO05D004119 3.2e-19 100.1 311 31.2
Thhalv10008294m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 3.2e-19 100.1 193 37.8
THA.LOC104798573 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 3.2e-19 100.1 187 39.6
AT2G34910 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 4.2e-19 99.8 182 37.9
Carub.0004s1659 Capsella rubella HOM05D002102 ORTHO05D004119 4.2e-19 99.8 180 38.3
AL8G14890 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 5.5e-19 99.4 202 38.1
BcaB06g28821 Brassica carinata HOM05D002102 ORTHO05D004119 7.1e-19 99.0 188 36.2
A09p35310 Brassica napus HOM05D002102 ORTHO05D004119 7.1e-19 99.0 194 37.1
Sp1g26750 Schrenkiella parvula HOM05D002102 ORTHO05D004119 1.2e-18 98.2 197 37.1
BcaC05g27123 Brassica carinata HOM05D002102 ORTHO05D004119 2.1e-18 97.4 194 36.6
C05p30080 Brassica napus HOM05D002102 ORTHO05D004119 2.1e-18 97.4 194 36.6
BolC5t31744H Brassica oleracea HOM05D002102 ORTHO05D004119 2.1e-18 97.4 194 36.6
Carub.0008s0360 Capsella rubella HOM05D002102 ORTHO05D004119 3.5e-18 96.7 387 29.5
BcaC02g11574 Brassica carinata HOM05D002102 ORTHO05D004119 7.9e-18 95.5 190 37.4
A05p10770 Brassica napus HOM05D002102 ORTHO05D004119 7.9e-18 95.5 190 37.4
C04p13880 Brassica napus HOM05D002102 ORTHO05D004119 7.9e-18 95.5 190 37.4
BolC4t22976H Brassica oleracea HOM05D002102 ORTHO05D004119 7.9e-18 95.5 190 37.4
BraA05t20021Z Brassica rapa HOM05D002102 ORTHO05D004119 7.9e-18 95.5 190 37.4
CARHR030340 Cardamine hirsuta HOM05D002102 ORTHO05D004119 7.9e-18 95.5 196 38.3
BcaB07g32751 Brassica carinata HOM05D002102 ORTHO05D004119 1.0e-17 95.1 192 35.4
THA.LOC104814329 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 1.3e-17 94.7 186 37.6
Sp4g17210 Schrenkiella parvula HOM05D002102 ORTHO05D004119 8.7e-17 92.0 183 35.5
BcaC06g34526 Brassica carinata HOM05D002102 ORTHO05D004119 1.1e-16 91.7 354 29.7
TPR.G749 Trifolium pratense HOM05D002102 ORTHO05D004119 1.1e-16 91.7 175 37.7
BraA02t07888Z Brassica rapa HOM05D002102 ORTHO05D004119 2.4e-14 84.0 196 36.2
Zm00001eb385230 Zea mays HOM05D002102 ORTHO05D004119 6.9e-14 82.4 270 32.6
BcaB07g30507 Brassica carinata HOM05D002102 ORTHO05D004119 2.6e-13 80.5 196 35.7
A02p28520 Brassica napus HOM05D002102 ORTHO05D004119 7.6e-13 79.0 361 26.9
BolC2t10555H Brassica oleracea HOM05D002102 ORTHO05D004119 8.4e-12 75.5 335 29.3
Os06g0574000 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D004119 8.4e-12 75.5 350 28.3
BcaC03g16685 Brassica carinata HOM05D002102 ORTHO05D004119 1.4e-11 74.7 336 29.2
Cfa001161 Carpinus fangiana HOM05D002102 ORTHO05D004119 9.3e-11 72.0 90 50.0
TPR.G11093 Trifolium pratense HOM05D002102 ORTHO05D004119 4.6e-10 69.7 129 38.0
ClCG01G025950 Citrullus lanatus HOM05D002102 ORTHO05D008242 3.9e-09 66.6 138 35.5
AUR62000648 Chenopodium quinoa HOM05D002102 ORTHO05D004119 3.3e-08 63.5 257 28.0
BcaB03g13811 Brassica carinata HOM05D002102 ORTHO05D004119 9.6e-08 62.0 179 33.5
Zm00001eb150800 Zea mays HOM05D002102 ORTHO05D004119 9.6e-08 62.0 108 36.1
BcaC01g05749 Brassica carinata HOM05D002102 ORTHO05D004119 1.6e-07 61.2 162 32.1
A07p09590 Brassica napus HOM05D002102 ORTHO05D004119 2.8e-07 60.5 179 33.5
BraA07t28753Z Brassica rapa HOM05D002102 ORTHO05D004119 2.8e-07 60.5 179 33.5
BolC7t41979H Brassica oleracea HOM05D002102 ORTHO05D004119 1.1e-06 58.5 179 33.0
C07p14770 Brassica napus HOM05D002102 ORTHO05D004119 1.4e-06 58.2 182 31.9


User provided reference genes

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