Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold41G15854 Striga asiatica HOM05D004681 ORTHO05D005541 7.6e-158 560.5 282 100.0
SGA_v2.0_scaffold41G15864 Striga asiatica HOM05D004681 ORTHO05D005541 1.7e-72 276.9 275 62.9
SalBow7G3904 Salvia bowleyana HOM05D004681 ORTHO05D005541 6.4e-64 248.4 275 57.5
SalBow7G0268 Salvia bowleyana HOM05D004681 ORTHO05D005541 7.0e-63 245.0 303 52.1
SGA_v2.0_scaffold21G09637 Striga asiatica HOM05D004681 ORTHO05D005541 6.0e-62 241.9 274 58.0
MSTRG.10452 Avicennia marina HOM05D004681 ORTHO05D005541 6.8e-58 228.4 275 53.8
Oeu000976.1 Olea europaea HOM05D004681 ORTHO05D005541 9.8e-57 224.6 270 55.9
Sopen07g005070 Solanum pennellii HOM05D004681 ORTHO05D005541 6.4e-56 221.9 261 53.3
Solyc07g009320.3 Solanum lycopersicum HOM05D004681 ORTHO05D005541 8.3e-56 221.5 267 53.2
GSVIVG01010902001 Vitis vinifera HOM05D004681 ORTHO05D005541 3.2e-55 219.5 268 53.7
Dinv26443 Davidia involucrata HOM05D004681 ORTHO05D005541 4.1e-55 219.2 252 54.0
Actinidia22469 Actinidia chinensis HOM05D004681 ORTHO05D005541 1.6e-54 217.2 268 51.5
Dinv25404 Davidia involucrata HOM05D004681 ORTHO05D005541 2.1e-54 216.9 253 54.2
Actinidia06358 Actinidia chinensis HOM05D004681 ORTHO05D005541 4.6e-54 215.7 267 51.3
PGSC0003DMG400008514 Solanum tuberosum HOM05D004681 ORTHO05D005541 7.8e-54 214.9 282 50.7
CAN.G1668.9 Capsicum annuum HOM05D004681 ORTHO05D005541 1.5e-52 210.7 266 51.9
Lj7A127G13 Lonicera japonica HOM05D004681 ORTHO05D005541 1.6e-51 207.2 250 51.6
Peaxi162Scf00324g00718 Petunia axillaris HOM05D004681 ORTHO05D005541 4.7e-51 205.7 267 50.9
CiPaw.07G195100 Carya illinoinensis HOM05D004681 ORTHO05D005541 2.6e-49 199.9 290 46.6
Cpa.g.sc95.29 Carica papaya HOM05D004681 ORTHO05D005541 3.4e-49 199.5 293 45.4
Cfa013431 Carpinus fangiana HOM05D004681 ORTHO05D005541 3.4e-49 199.5 271 46.9
Nitab4.5_0010281g0010 Nicotiana tabacum HOM05D004681 ORTHO05D005541 3.4e-49 199.5 254 51.2
Eucgr.C00132 Eucalyptus grandis HOM05D004681 ORTHO05D005541 4.4e-49 199.1 261 49.0
Thecc.09G181200 Theobroma cacao HOM05D004681 ORTHO05D005541 7.6e-49 198.4 263 49.0
CiPaw.08G033800 Carya illinoinensis HOM05D004681 ORTHO05D005541 2.2e-48 196.8 264 49.2
Rhsim13G0200500 Rhododendron simsii HOM05D004681 ORTHO05D005541 3.7e-48 196.1 318 43.4
Migut.L01897 Erythranthe guttata HOM05D004681 ORTHO05D005541 6.4e-48 195.3 266 52.3
Sc14g0001370 Simmondsia chinensis HOM05D004681 ORTHO05D005541 8.4e-48 194.9 269 46.5
Duzib168G0714 Durio zibethinus HOM05D004681 ORTHO05D005541 1.1e-47 194.5 249 50.6
PGR044G2653 Punica granatum HOM05D004681 ORTHO05D005541 1.1e-47 194.5 266 46.6
Gohir.A08G017900 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.4e-47 194.1 249 49.8
Gohir.D08G028500 Gossypium hirsutum HOM05D004681 ORTHO05D005541 1.4e-47 194.1 249 49.8
Atru.chr7.819 Acer truncatum HOM05D004681 ORTHO05D005541 4.1e-47 192.6 250 50.4
PSO079G0045 Papaver somniferum HOM05D004681 ORTHO05D005541 9.2e-47 191.4 276 47.1
Duzib170G0205 Durio zibethinus HOM05D004681 ORTHO05D005541 1.6e-46 190.7 255 49.4
Cc06_g22600 Coffea canephora HOM05D004681 ORTHO05D005541 4.6e-46 189.1 270 48.9
PSO423G0181 Papaver somniferum HOM05D004681 ORTHO05D005541 4.6e-46 189.1 276 45.7
QL12p032381 Quercus lobata HOM05D004681 ORTHO05D005541 1.7e-45 187.2 281 44.5
Prupe.1G079200 Prunus persica HOM05D004681 ORTHO05D005541 3.9e-45 186.0 246 48.0
unitig_578.g16069 Utricularia gibba HOM05D004681 ORTHO05D005541 3.9e-45 186.0 265 48.3
Gorai.004G025600 Gossypium raimondii HOM05D004681 ORTHO05D005541 5.1e-45 185.7 260 47.7
HanXRQChr09g0266261 Helianthus annuus HOM05D004681 ORTHO05D005541 5.1e-45 185.7 254 48.8
COL.COLO4_29315 Corchorus olitorius HOM05D004681 ORTHO05D005541 1.1e-44 184.5 249 48.6
Ciclev10008916m.g Citrus clementina HOM05D004681 ORTHO05D005541 1.9e-44 183.7 263 47.1
Aqoxy7G02735 Aquilegia oxysepala HOM05D004681 ORTHO05D005541 2.5e-44 183.3 252 45.6
Ah.09g230170 Amaranthus hybridus HOM05D004681 ORTHO05D005541 7.3e-44 181.8 270 45.9
BcaB07g31622 Brassica carinata HOM05D004681 ORTHO05D005541 7.3e-44 181.8 254 45.7
Manes.14G161401 Manihot esculenta HOM05D004681 ORTHO05D005541 7.3e-44 181.8 262 46.6
TWI63G0533 Tripterygium wilfordii HOM05D004681 ORTHO05D005541 9.6e-44 181.4 256 47.7
Lsat_1_v5_gn_4_183080 Lactuca sativa HOM05D004681 ORTHO05D005541 1.2e-43 181.0 246 50.0
Nitab4.5_0000074g0040 Nicotiana tabacum HOM05D004681 ORTHO05D005541 1.6e-43 180.6 238 48.7
AL3G52840 Arabidopsis lyrata HOM05D004681 ORTHO05D005541 2.1e-43 180.3 254 45.3
AUR62033246 Chenopodium quinoa HOM05D004681 ORTHO05D005541 3.6e-43 179.5 276 44.9
Manes.04G060300 Manihot esculenta HOM05D004681 ORTHO05D005541 4.7e-43 179.1 262 45.4
Hund09046 Selenicereus undatus HOM05D004681 ORTHO05D005541 4.7e-43 179.1 268 45.1
VMungo1215G0406 Vigna mungo HOM05D004681 ORTHO05D005541 1.8e-42 177.2 260 43.8
Carub.0003s3332 Capsella rubella HOM05D004681 ORTHO05D005541 1.2e-41 174.5 254 44.1
EL10Ac8g18317 Beta vulgaris HOM05D004681 ORTHO05D005541 1.5e-41 174.1 270 44.8
CSS0001946 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 2.6e-41 173.3 204 48.0
BcaC04g22869 Brassica carinata HOM05D004681 ORTHO05D005541 3.4e-41 172.9 254 43.7
A09p12190 Brassica napus HOM05D004681 ORTHO05D005541 3.4e-41 172.9 254 43.7
Potri.018G145508 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.4e-41 172.9 237 48.5
BcaB03g16704 Brassica carinata HOM05D004681 ORTHO05D005541 5.8e-41 172.2 254 44.5
CARHR109600 Cardamine hirsuta HOM05D004681 ORTHO05D005541 5.8e-41 172.2 257 43.6
Thhalv10022785m.g Eutrema salsugineum HOM05D004681 ORTHO05D005541 7.6e-41 171.8 254 43.7
BraA09t36865Z Brassica rapa HOM05D004681 ORTHO05D005541 9.9e-41 171.4 254 43.3
CSS0025965 Camellia sinensis var. sinensis HOM05D004681 ORTHO05D005541 9.9e-41 171.4 208 48.1
HanXRQChr10g0297571 Helianthus annuus HOM05D004681 ORTHO05D005541 1.7e-40 170.6 282 42.6
vmacro23062 Vaccinium macrocarpon HOM05D004681 ORTHO05D005541 1.7e-40 170.6 246 44.3
FvH4_4g07590 Fragaria vesca HOM05D004681 ORTHO05D005541 2.2e-40 170.2 279 42.3
RcHm_v2.0_Chr4g0400191 Rosa chinensis HOM05D004681 ORTHO05D005541 2.2e-40 170.2 302 42.4
Phvul.003G142900 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 6.4e-40 168.7 260 43.1
FAN12G2798 Fragaria x ananassa HOM05D004681 ORTHO05D005541 8.4e-40 168.3 266 43.2
BolC9t54347H Brassica oleracea HOM05D004681 ORTHO05D005541 1.4e-39 167.5 255 43.1
ClCG06G013520 Citrullus lanatus HOM05D004681 ORTHO05D005541 2.4e-39 166.8 269 42.4
AT2G19080 Arabidopsis thaliana HOM05D004681 ORTHO05D005541 5.4e-39 165.6 257 42.8
FAN22G1928 Fragaria x ananassa HOM05D004681 ORTHO05D005541 5.4e-39 165.6 266 42.9
Medtr4g127630 Medicago truncatula HOM05D004681 ORTHO05D005541 9.3e-39 164.9 261 43.7
C09p14440 Brassica napus HOM05D004681 ORTHO05D005541 2.1e-38 163.7 254 41.7
Nn2g12745 Nelumbo nucifera HOM05D004681 ORTHO05D005541 3.5e-38 162.9 195 53.8
Sabra06G0058400 Salix brachista HOM05D004681 ORTHO05D005541 4.6e-38 162.5 254 44.1
MD13G1245600 Malus domestica HOM05D004681 ORTHO05D005541 6.0e-38 162.2 271 41.7
TAR636G1425 Trochodendron aralioides HOM05D004681 ORTHO05D005541 6.0e-38 162.2 193 52.3
arahy.Tifrunner.gnm1.ann1.L4KBSE Arachis hypogaea HOM05D004681 ORTHO05D005541 1.0e-37 161.4 267 42.7
arahy.Tifrunner.gnm1.ann1.K04ERL Arachis hypogaea HOM05D004681 ORTHO05D005541 3.9e-37 159.5 297 40.4
MELO3C017439.2 Cucumis melo HOM05D004681 ORTHO05D005541 6.6e-37 158.7 273 42.1
Glyma.15G164000 Glycine max HOM05D004681 ORTHO05D005541 8.7e-37 158.3 268 40.7
Psat0s736g0040 Pisum sativum HOM05D004681 ORTHO05D005541 1.1e-36 157.9 258 42.2
CANSAT11G1051 Cannabis sativa HOM05D004681 ORTHO05D005541 1.5e-36 157.5 299 41.5
ECA232G3088 Erigeron canadensis HOM05D004681 ORTHO05D005541 1.5e-36 157.5 251 44.2
Glyma.09G057900 Glycine max HOM05D004681 ORTHO05D005541 1.5e-36 157.5 268 42.2
RcHm_v2.0_Chr7g0191541 Rosa chinensis HOM05D004681 ORTHO05D005541 1.9e-36 157.1 258 42.2
Aa31LG8G16140 Aethionema arabicum HOM05D004681 ORTHO05D005541 9.6e-36 154.8 257 41.2
MBI13_g31546_MAGBIO Magnolia biondii HOM05D004681 ORTHO05D005541 1.3e-35 154.5 283 39.6
TPR.G5388 Trifolium pratense HOM05D004681 ORTHO05D005541 1.6e-35 154.1 266 41.4
CsaV3_1G031790 Cucumis sativus L. HOM05D004681 ORTHO05D005541 4.8e-35 152.5 273 41.0
Glyma.17G060700 Glycine max HOM05D004681 ORTHO05D005541 4.8e-35 152.5 260 42.3
Glyma.13G099400 Glycine max HOM05D004681 ORTHO05D005541 6.2e-35 152.1 260 41.5
Sp3g32480 Schrenkiella parvula HOM05D004681 ORTHO05D005541 6.2e-35 152.1 186 48.9
Sed0004411 Sechium edule HOM05D004681 ORTHO05D005541 8.1e-35 151.8 264 40.5
FAN17G0253 Fragaria x ananassa HOM05D004681 ORTHO05D005541 2.4e-34 150.2 267 41.2
BcaC06g36518 Brassica carinata HOM05D004681 ORTHO05D005541 3.1e-34 149.8 254 40.2
AUR62021331 Chenopodium quinoa HOM05D004681 ORTHO05D005541 4.0e-34 149.4 207 47.8
THA.LOC104819968 Tarenaya hassleriana HOM05D004681 ORTHO05D005541 5.3e-34 149.1 241 41.1
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 3.4e-33 146.4 265 40.4
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 7.6e-33 145.2 313 37.7
Lalb_Chr15g0084091 Lupinus albus HOM05D004681 ORTHO05D005541 1.3e-32 144.4 274 38.0
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 2.2e-32 143.7 283 38.2
Lj6g0005497 Lotus japonicus HOM05D004681 ORTHO05D005541 2.2e-32 143.7 264 40.5
Os06g0168000 Oryza sativa ssp. japonica HOM05D004681 ORTHO05D005541 2.9e-32 143.3 279 39.4
A07p01650 Brassica napus HOM05D004681 ORTHO05D005541 1.1e-31 141.4 225 41.3
BraA07t27967Z Brassica rapa HOM05D004681 ORTHO05D005541 1.1e-31 141.4 225 41.3
C07p03410 Brassica napus HOM05D004681 ORTHO05D005541 2.4e-31 140.2 225 41.3
BolC7t40740H Brassica oleracea HOM05D004681 ORTHO05D005541 2.4e-31 140.2 225 41.3
VMungo1309G2393 Vigna mungo HOM05D004681 ORTHO05D005541 1.6e-30 137.5 264 37.1
HPP92_004723 Vanilla planifolia HOM05D004681 ORTHO05D005541 3.5e-30 136.3 273 37.7
Lj4g0016729 Lotus japonicus HOM05D004681 ORTHO05D005541 6.0e-30 135.6 262 37.0
HanXRQChr04g0105751 Helianthus annuus HOM05D004681 ORTHO05D005541 7.9e-30 135.2 130 54.6
ATR0626G278 Amborella trichopoda HOM05D004681 ORTHO05D005541 1.0e-29 134.8 277 36.5
Phvul.009G237800 Phaseolus vulgaris HOM05D004681 ORTHO05D005541 1.7e-29 134.0 263 37.6
arahy.Tifrunner.gnm1.ann1.KM341F Arachis hypogaea HOM05D004681 ORTHO05D005541 5.1e-29 132.5 264 37.5
Lalb_Chr12g0199511 Lupinus albus HOM05D004681 ORTHO05D005541 6.6e-29 132.1 264 39.4
Potri.006G077100 Populus trichocarpa HOM05D004681 ORTHO05D005541 2.5e-28 130.2 193 46.6
Ca_02042_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 3.3e-28 129.8 211 38.9
arahy.Tifrunner.gnm1.ann1.LX7F61 Arachis hypogaea HOM05D004681 ORTHO05D005541 5.6e-28 129.0 264 36.4
Medtr2g036910 Medicago truncatula HOM05D004681 ORTHO05D005541 2.8e-27 126.7 267 36.7
TPR.G9028 Trifolium pratense HOM05D004681 ORTHO05D005541 8.1e-27 125.2 205 39.5
CDE06G1906 Ceratophyllum demersum HOM05D004681 ORTHO05D005541 9.9e-25 118.2 263 38.4
Psat1g145840 Pisum sativum HOM05D004681 ORTHO05D005541 8.4e-24 115.2 147 44.2
Zm00001eb375500 Zea mays HOM05D004681 ORTHO05D005541 1.1e-20 104.8 137 43.1
CAN.G497.61 Capsicum annuum HOM05D004681 ORTHO05D005541 3.3e-20 103.2 76 64.5
Potri.018G147625 Populus trichocarpa HOM05D004681 ORTHO05D005541 3.7e-19 99.8 193 40.9
RcHm_v2.0_Chr7g0191431 Rosa chinensis HOM05D004681 ORTHO05D005541 3.1e-18 96.7 172 44.2
Potri.001G065336 Populus trichocarpa HOM05D004681 ORTHO05D005541 1.2e-17 94.7 85 60.0
Potri.001G064609 Populus trichocarpa HOM05D004681 ORTHO05D005541 4.5e-17 92.8 99 52.5
Haze_21984 Corylus avellana HOM05D004681 ORTHO05D005541 5.8e-17 92.4 101 47.5
Ca_02046_v3 Cicer arietinum L. HOM05D004681 ORTHO05D005541 8.4e-16 88.6 76 53.9
Pp3c12_12510 Physcomitrium patens HOM05D004681 ORTHO05D005541 4.2e-15 86.3 282 27.7
CAN.G609.4 Capsicum annuum HOM05D004681 ORTHO05D005541 7.1e-15 85.5 100 46.0
Mapoly0001s0301 Marchantia polymorpha HOM05D004681 ORTHO05D005541 8.7e-13 78.6 265 29.1
AagrBONN_evm.TU.Sc2ySwM_228.4196 Anthoceros agrestis HOM05D004681 ORTHO05D005541 7.4e-12 75.5 283 28.3
Haze_21988 Corylus avellana HOM05D004681 ORTHO05D005541 1.3e-11 74.7 99 49.5
Potri.001G065000 Populus trichocarpa HOM05D004681 ORTHO05D005541 5.3e-10 69.3 85 54.1
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 6.9e-10 68.9 56 57.1
HanXRQChr04g0105741 Helianthus annuus HOM05D004681 ORTHO05D005541 4.5e-09 66.2 96 52.1
Haze_21985 Corylus avellana HOM05D004681 ORTHO05D005541 6.5e-08 62.4 96 42.7
SMO358G0154 Selaginella moellendorffii HOM05D004681 ORTHO05D005541 9.3e-07 58.5 265 24.9


User provided reference genes

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