Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 1.7e-225 785.8 437 100.0
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 6.1e-122 441.8 330 77.3
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 6.3e-111 405.2 327 75.5
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 6.3e-111 405.2 327 75.5
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 7.5e-96 355.1 323 65.6
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 1.9e-91 340.5 346 61.0
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 5.7e-88 328.9 326 64.1
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 7.8e-77 292.0 346 56.4
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 4.0e-73 279.6 349 54.7
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 2.6e-72 276.9 340 53.2
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 2.9e-71 273.5 332 50.9
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 4.6e-69 266.2 338 49.7
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.3e-68 264.6 338 50.0
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.1e-65 255.0 337 48.4
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 2.4e-62 243.8 358 45.3
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.2e-62 243.4 336 47.9
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 3.2e-62 243.4 336 49.1
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 5.4e-62 242.7 339 48.1
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 7.1e-62 242.3 334 47.3
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 7.1e-62 242.3 337 47.2
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 7.1e-62 242.3 337 47.2
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 1.6e-61 241.1 337 47.5
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 2.1e-61 240.7 336 47.6
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 3.5e-61 240.0 342 47.1
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 3.5e-61 240.0 334 46.1
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 7.8e-61 238.8 337 46.9
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 3.0e-60 236.9 338 46.7
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 3.0e-60 236.9 335 46.6
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 2.5e-59 233.8 334 46.1
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 3.3e-59 233.4 342 44.7
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.3e-59 233.4 336 46.7
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 4.3e-59 233.0 333 46.8
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 4.3e-59 233.0 337 46.9
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 4.3e-59 233.0 343 47.8
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 7.3e-59 232.3 336 51.5
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 7.3e-59 232.3 335 48.1
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 2.8e-58 230.3 338 46.2
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 3.6e-58 229.9 336 46.4
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 3.6e-58 229.9 336 46.4
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 3.6e-58 229.9 338 46.4
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 4.7e-58 229.6 343 48.7
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 4.7e-58 229.6 343 46.9
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 6.2e-58 229.2 336 46.4
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 1.1e-57 228.4 345 49.3
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 1.1e-57 228.4 336 46.1
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 1.8e-57 227.6 330 47.9
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 2.4e-57 227.3 335 45.4
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.4e-57 227.3 337 45.4
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 2.4e-57 227.3 341 46.0
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 4.0e-57 226.5 338 46.2
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 6.8e-57 225.7 342 44.2
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 8.9e-57 225.3 343 44.6
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 1.5e-56 224.6 337 45.7
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 2.0e-56 224.2 346 44.5
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 2.6e-56 223.8 340 45.3
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 3.4e-56 223.4 340 45.6
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 9.9e-56 221.9 348 44.0
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 2.2e-55 220.7 339 46.6
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 2.2e-55 220.7 339 46.6
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 2.9e-55 220.3 343 43.7
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 2.9e-55 220.3 342 46.5
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 4.9e-55 219.5 335 44.8
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 4.9e-55 219.5 326 45.7
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 8.4e-55 218.8 336 45.2
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 4.2e-54 216.5 342 46.5
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 5.4e-54 216.1 331 44.7
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 5.4e-54 216.1 336 44.0
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 5.4e-54 216.1 351 43.9
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.2e-53 214.9 335 43.3
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 2.1e-53 214.2 337 44.8
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 2.7e-53 213.8 350 41.4
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 3.5e-53 213.4 333 43.8
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 3.5e-53 213.4 335 43.0
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 3.5e-53 213.4 342 42.7
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.6e-53 213.0 357 41.7
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 6.0e-53 212.6 327 44.6
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 1.0e-52 211.8 327 44.0
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 1.0e-52 211.8 327 44.0
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 2.3e-52 210.7 331 42.9
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 8.7e-52 208.8 338 42.0
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 8.7e-52 208.8 338 42.0
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 1.5e-51 208.0 334 42.8
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 1.9e-51 207.6 329 43.5
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 1.9e-51 207.6 329 43.5
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.5e-51 207.2 325 44.6
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 5.6e-51 206.1 334 42.5
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 1.3e-50 204.9 358 44.7
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 1.6e-50 204.5 337 44.8
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 2.8e-50 203.8 335 41.8
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 6.2e-50 202.6 341 41.9
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 6.2e-50 202.6 325 42.2
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 1.4e-49 201.4 341 41.9
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 4.0e-49 199.9 336 42.0
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 5.3e-49 199.5 339 41.3
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.5e-48 198.0 376 39.1
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 2.0e-48 197.6 338 41.4
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 4.4e-48 196.4 347 43.5
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 1.7e-47 194.5 346 40.8
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.7e-47 194.5 336 44.3
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 3.8e-47 193.4 331 42.6
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 4.9e-47 193.0 328 42.7
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 1.4e-46 191.4 337 40.1
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 1.9e-46 191.0 326 42.3
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 3.2e-46 190.3 344 41.0
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 7.1e-46 189.1 336 39.3
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 1.6e-45 188.0 252 57.5
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 2.1e-45 187.6 358 42.7
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 4.6e-45 186.4 338 41.1
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 1.4e-41 174.9 337 38.6
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 1.5e-40 171.4 367 35.1
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 1.3e-39 168.3 340 38.8
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 6.4e-39 166.0 330 39.4
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 4.2e-38 163.3 333 40.5
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 4.6e-37 159.8 278 43.2
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 7.9e-37 159.1 318 41.8
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 6.2e-34 149.4 152 56.6
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 1.1e-33 148.7 350 38.3
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 1.8e-33 147.9 297 38.7
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 5.3e-33 146.4 355 35.2
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 1.2e-32 145.2 363 40.5
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 7.1e-30 136.0 246 43.9
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 6.0e-29 132.9 129 59.7
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 7.9e-29 132.5 274 42.0
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 1.8e-28 131.3 349 38.4
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 2.5e-27 127.5 320 33.8
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 2.5e-27 127.5 300 35.3
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 7.4e-27 125.9 324 35.2
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 9.6e-27 125.6 342 36.3
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 3.7e-26 123.6 310 37.1
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 1.8e-25 121.3 97 67.0
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 1.5e-24 118.2 207 42.5
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 5.9e-24 116.3 278 33.8
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 1.0e-23 115.5 171 42.7
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 2.3e-20 104.4 144 45.1
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 1.4e-17 95.1 427 30.2
MSTRG.10449 Avicennia marina HOM05D004638 ORTHO05D005443 2.2e-15 87.8 81 66.7
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 5.0e-15 86.7 304 28.6
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.1e-14 85.5 99 45.5
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 2.1e-13 81.3 332 27.1
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 6.7e-12 76.3 134 39.6
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 4.3e-11 73.6 69 59.4
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 7.4e-11 72.8 69 50.7
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 1.3e-10 72.0 309 29.1
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 3.1e-09 67.4 135 41.5
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 2.9e-07 60.8 54 57.4
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 6.5e-07 59.7 196 35.2
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 4.2e-06 57.0 44 59.1


User provided reference genes

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