Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 5.6e-162 574.3 311 100.0
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 2.5e-101 372.9 278 77.3
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 1.7e-97 360.1 279 72.0
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 4.7e-92 342.0 278 71.9
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 4.7e-84 315.5 276 63.4
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 9.4e-77 291.2 279 61.3
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 2.7e-76 289.7 279 60.6
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 1.5e-74 283.9 280 58.6
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 1.3e-73 280.8 274 58.8
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.2e-73 280.0 278 60.1
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 4.9e-73 278.9 274 58.4
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.8e-72 276.9 281 56.2
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 1.8e-72 276.9 281 56.9
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 3.1e-72 276.2 281 55.5
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 3.1e-72 276.2 281 55.9
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 4.1e-72 275.8 281 55.5
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 5.4e-72 275.4 286 55.6
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 9.1e-72 274.6 281 55.2
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.2e-71 274.2 280 58.6
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 1.2e-71 274.2 281 54.8
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 1.6e-71 273.9 279 56.6
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 2.7e-71 273.1 280 55.4
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 3.5e-71 272.7 281 54.4
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 7.7e-71 271.6 279 55.6
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.0e-70 271.2 279 54.5
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 1.7e-70 270.4 280 56.4
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.7e-70 270.4 279 55.2
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 2.3e-70 270.0 276 55.1
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 3.8e-70 269.2 277 55.2
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 6.6e-70 268.5 279 55.2
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 8.6e-70 268.1 277 55.6
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 8.6e-70 268.1 279 55.2
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 1.1e-69 267.7 279 56.6
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 1.1e-69 267.7 279 54.8
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.5e-69 267.3 280 54.6
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.5e-69 267.3 278 55.4
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 1.9e-69 266.9 284 54.6
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 3.3e-69 266.2 279 56.3
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 4.2e-69 265.8 280 53.2
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 2.1e-68 263.5 276 55.4
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 3.6e-68 262.7 278 55.4
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 4.7e-68 262.3 279 55.6
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 4.7e-68 262.3 280 55.4
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 1.0e-67 261.2 275 54.5
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.8e-67 260.4 272 55.1
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 2.3e-67 260.0 279 54.5
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 3.0e-67 259.6 279 53.4
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 3.0e-67 259.6 278 52.5
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.0e-67 259.2 272 54.8
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 8.9e-67 258.1 278 54.7
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 4.4e-66 255.8 278 52.9
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 7.5e-66 255.0 277 53.8
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 2.2e-65 253.4 277 51.3
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 3.7e-65 252.7 273 52.0
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 4.9e-65 252.3 277 51.6
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 6.3e-65 251.9 276 52.2
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 6.3e-65 251.9 275 52.7
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 8.3e-65 251.5 276 53.3
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.1e-64 251.1 279 53.0
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 1.1e-64 251.1 282 55.7
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.4e-64 250.8 276 51.8
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 1.4e-64 250.8 274 51.5
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 2.4e-64 250.0 280 52.1
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 2.4e-64 250.0 273 52.7
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 3.2e-64 249.6 276 51.8
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 3.2e-64 249.6 275 51.6
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 4.1e-64 249.2 274 51.1
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 4.1e-64 249.2 274 51.1
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 9.2e-64 248.1 274 51.1
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 9.2e-64 248.1 273 51.6
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 1.2e-63 247.7 274 51.1
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.2e-63 247.7 275 52.0
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 2.0e-63 246.9 274 51.1
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 2.0e-63 246.9 278 51.1
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 2.0e-63 246.9 271 52.0
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 3.5e-63 246.1 271 51.7
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 4.6e-63 245.7 274 51.8
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 5.9e-63 245.4 274 51.5
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 5.9e-63 245.4 300 49.0
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 1.0e-62 244.6 277 50.2
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 2.9e-62 243.0 269 52.0
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 3.9e-62 242.7 272 50.7
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 8.6e-62 241.5 269 50.6
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 1.1e-61 241.1 272 50.7
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 1.1e-61 241.1 274 48.9
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 2.5e-61 240.0 272 50.0
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 3.3e-61 239.6 273 51.3
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.3e-61 239.2 259 53.7
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 7.3e-61 238.4 272 50.0
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 7.3e-61 238.4 275 50.5
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 1.2e-60 237.7 277 49.5
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 6.1e-60 235.3 275 50.5
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 8.0e-60 235.0 274 48.9
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 8.0e-60 235.0 274 50.7
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.4e-59 234.2 277 49.8
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 1.4e-59 234.2 271 51.7
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.8e-59 233.8 273 51.6
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 4.0e-59 232.6 277 49.5
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 8.9e-59 231.5 142 81.7
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 1.5e-58 230.7 277 49.5
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 9.8e-58 228.0 275 49.5
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.3e-57 227.6 279 50.5
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 2.9e-57 226.5 218 56.0
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.1e-56 224.6 274 48.9
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 3.2e-56 223.0 272 48.5
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 4.1e-56 222.6 277 48.4
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 7.0e-56 221.9 280 48.9
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 9.2e-56 221.5 204 60.3
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 6.0e-55 218.8 277 47.3
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 6.0e-55 218.8 270 46.7
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 2.3e-54 216.9 277 45.8
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 3.9e-54 216.1 277 46.6
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 1.2e-52 211.1 277 46.2
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 1.8e-51 207.2 142 72.5
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.7e-49 199.5 144 70.1
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.1e-48 198.0 287 41.1
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 1.9e-48 197.2 204 53.9
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 2.1e-47 193.7 203 54.7
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 6.0e-47 192.2 274 44.9
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 3.0e-46 189.9 196 54.1
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.3e-45 186.4 200 53.0
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 5.6e-45 185.7 280 43.2
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 7.3e-45 185.3 228 51.8
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 7.3e-45 185.3 283 38.2
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 4.7e-44 182.6 274 47.1
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 6.8e-43 178.7 228 47.8
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 9.9e-42 174.9 221 48.4
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.4e-40 170.2 104 81.7
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 4.6e-39 166.0 273 41.0
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 1.1e-35 154.8 272 38.6
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 6.8e-35 152.1 190 47.4
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 1.2e-34 151.4 277 39.0
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 2.6e-34 150.2 112 66.1
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 4.4e-34 149.4 113 65.5
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 7.6e-34 148.7 151 60.3
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.7e-31 140.2 229 39.7
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.5e-31 139.8 234 39.3
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.3e-30 137.9 147 52.4
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 1.3e-30 137.9 113 66.4
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 1.3e-28 131.3 202 44.1
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 9.0e-27 125.2 272 34.6
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 6.4e-25 119.0 137 51.1
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 5.4e-24 115.9 139 53.2
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 7.1e-24 115.5 275 30.2
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 9.3e-24 115.2 157 49.7
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 6.6e-22 109.0 90 64.4
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 8.7e-22 108.6 89 67.4
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 2.5e-21 107.1 91 60.4
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 3.6e-20 103.2 272 29.4
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 4.0e-19 99.8 123 51.2
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 5.3e-19 99.4 92 54.3
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 9.0e-19 98.6 221 33.5
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.3e-17 94.7 94 57.4
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 1.3e-17 94.7 94 57.4
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 4.9e-17 92.8 57 75.4
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 4.9e-17 92.8 101 58.4
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.4e-16 90.5 89 53.9
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.0e-14 85.1 70 62.9
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 1.8e-14 84.3 52 75.0
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 3.0e-14 83.6 93 46.2
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 8.7e-14 82.0 52 73.1
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.1e-13 81.6 50 76.0
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 1.5e-13 81.3 52 73.1
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 1.5e-13 81.3 52 73.1
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.6e-12 77.8 75 58.7
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 2.1e-12 77.4 96 54.2
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 3.7e-12 76.6 52 69.2
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 6.2e-12 75.9 93 45.2
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 1.4e-11 74.7 120 39.2
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 1.8e-11 74.3 194 30.9
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 2.6e-10 70.5 111 42.3
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 2.6e-10 70.5 88 46.6
HanXRQChr04g0115761 Helianthus annuus HOM05D003667 ORTHO05D004397 1.7e-09 67.8 51 64.7
COL.COLO4_28622 Corchorus olitorius HOM05D003667 ORTHO05D004397 4.9e-09 66.2 78 48.7
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-08 65.1 103 41.7
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 1.1e-08 65.1 103 41.7
BNapus_Darmor_BZH_scaffold_271p00010 Brassica napus HOM05D003667 ORTHO05D004397 7.1e-08 62.4 131 38.2
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 2.3e-06 57.4 98 35.7
Oeu032224.2 Olea europaea HOM05D003667 ORTHO05D004397 3.0e-06 57.0 40 75.0


User provided reference genes

Program Settings