Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 2.9e-137 491.9 245 100.0
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 4.0e-107 391.7 243 79.4
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 8.7e-94 347.4 229 74.7
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 5.7e-93 344.7 215 75.8
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 3.7e-92 342.0 223 75.3
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 8.2e-92 340.9 216 75.0
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 1.1e-91 340.5 216 75.0
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 1.2e-90 337.0 235 68.9
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 1.2e-90 337.0 216 74.5
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 2.0e-90 336.3 211 77.3
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 7.7e-90 334.3 216 74.5
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 9.4e-88 327.4 222 71.2
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 1.4e-86 323.6 215 71.2
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 2.3e-86 322.8 221 71.9
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 5.1e-86 321.6 225 69.8
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 2.0e-85 319.7 244 64.8
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 2.0e-85 319.7 222 70.3
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 2.6e-85 319.3 221 69.2
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 3.3e-85 318.9 222 70.3
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 5.7e-85 318.2 215 72.1
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 7.4e-85 317.8 225 69.8
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 9.7e-85 317.4 223 68.6
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 9.7e-85 317.4 217 70.0
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 9.7e-85 317.4 217 71.4
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 9.7e-85 317.4 214 72.9
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 1.7e-84 316.6 245 64.1
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 3.7e-84 315.5 224 68.3
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 6.3e-84 314.7 222 71.2
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 1.8e-83 313.2 223 68.6
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 1.8e-83 313.2 238 64.7
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 2.4e-83 312.8 214 69.6
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 2.4e-83 312.8 236 64.4
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 2.4e-83 312.8 226 68.1
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 2.4e-83 312.8 231 66.2
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 3.1e-83 312.4 226 67.7
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 6.9e-83 311.2 225 68.0
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 9.1e-83 310.8 213 70.4
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 2.0e-82 309.7 217 68.7
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 4.5e-82 308.5 223 66.8
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 1.7e-81 306.6 245 63.3
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 2.2e-81 306.2 229 67.7
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 2.2e-81 306.2 213 69.0
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 2.9e-81 305.8 212 68.4
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 3.8e-81 305.4 228 65.8
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 1.4e-80 303.5 241 64.7
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 1.4e-80 303.5 244 62.7
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 1.4e-80 303.5 229 65.1
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 1.4e-80 303.5 229 65.1
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 2.5e-80 302.8 232 63.8
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.2e-79 300.4 251 60.2
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.6e-79 300.1 228 63.6
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.6e-79 300.1 232 62.9
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 1.6e-79 300.1 239 63.6
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 1.6e-79 300.1 225 65.3
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.6e-79 298.9 228 62.7
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 1.4e-78 297.0 215 67.4
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 3.9e-78 295.4 226 63.7
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 3.9e-78 295.4 206 66.5
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 5.2e-78 295.0 217 65.4
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 6.7e-78 294.7 222 65.8
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 8.8e-78 294.3 212 68.9
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 1.1e-77 293.9 218 65.1
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 1.5e-77 293.5 217 65.9
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 2.0e-77 293.1 220 65.0
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 2.6e-77 292.7 213 66.2
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 5.7e-77 291.6 242 59.9
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 1.3e-76 290.4 235 62.6
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 6.3e-76 288.1 224 65.6
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 8.2e-76 287.7 221 64.7
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 8.2e-76 287.7 225 63.6
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 8.2e-76 287.7 224 66.1
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 1.1e-75 287.3 219 67.1
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 1.4e-75 287.0 229 62.4
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 1.2e-74 283.9 213 66.2
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 1.6e-74 283.5 247 59.5
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 2.6e-74 282.7 225 62.2
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 5.9e-74 281.6 240 60.4
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 7.7e-74 281.2 247 59.5
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 7.7e-74 281.2 226 61.5
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 1.3e-73 280.4 239 60.3
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.3e-73 280.4 250 56.4
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 2.9e-73 279.3 217 64.1
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 2.9e-73 279.3 225 61.8
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 3.8e-73 278.9 226 58.0
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 1.2e-71 273.9 216 63.0
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 1.6e-71 273.5 258 53.9
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 1.0e-70 270.8 226 60.6
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 2.3e-70 269.6 226 60.2
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 9.7e-69 264.2 242 57.0
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 1.4e-67 260.4 213 61.0
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.2e-63 247.3 258 53.1
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 4.7e-63 245.4 200 64.0
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 6.8e-62 241.5 235 52.8
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.0e-61 240.0 241 53.1
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 4.1e-59 232.3 225 50.2
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 6.5e-57 224.9 128 77.3
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 1.5e-53 213.8 194 58.8
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 6.3e-52 208.4 190 57.9
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 8.3e-52 208.0 129 72.9
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.1e-51 207.6 126 74.6
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 5.4e-51 205.3 126 73.0
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 8.6e-49 198.0 187 56.1
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 6.1e-47 191.8 148 64.2
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.2e-46 188.7 166 59.0
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 6.8e-46 188.3 183 56.3
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.5e-45 187.2 165 58.8
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 2.0e-45 186.8 171 60.2
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 4.3e-40 169.1 255 36.5
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 2.3e-38 163.3 145 57.2
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 5.2e-38 162.2 137 59.9
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 8.9e-38 161.4 104 68.3
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 3.2e-35 152.9 105 67.6
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 9.2e-35 151.4 135 57.8
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.7e-33 147.1 155 49.7
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 1.5e-32 144.1 117 63.2
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 1.4e-30 137.5 88 75.0
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.2e-26 124.4 77 71.4
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.7e-26 123.2 77 72.7
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.6e-26 122.5 77 71.4
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.6e-26 122.5 77 71.4
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.8e-26 121.7 76 72.4
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.8e-26 121.7 76 72.4
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.3e-25 120.9 77 67.5
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.3e-25 120.9 77 68.8
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.7e-25 120.6 76 71.1
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 6.6e-25 118.6 132 53.8
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 1.1e-24 117.9 67 76.1
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 3.1e-22 109.8 97 58.8
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 5.8e-21 105.5 66 71.2
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 5.8e-21 105.5 99 54.5
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 7.8e-18 95.1 88 56.8
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 9.6e-16 88.2 65 64.6
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 2.1e-15 87.0 53 69.8
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 1.1e-14 84.7 70 58.6
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 1.4e-14 84.3 74 56.8
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.8e-14 84.0 77 53.2
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 9.0e-14 81.6 47 74.5
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 1.5e-13 80.9 64 59.4
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.6e-13 80.1 91 47.3
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 1.7e-12 77.4 76 53.9
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 2.2e-12 77.0 166 33.7
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 4.9e-12 75.9 138 32.6
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 6.0e-10 68.9 186 28.0
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 6.0e-10 68.9 165 27.9
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 7.8e-10 68.6 165 28.5
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 3.0e-09 66.6 169 25.4
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 5.6e-08 62.4 170 24.1
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 3.6e-07 59.7 34 70.6
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.8e-06 57.4 147 27.9
FvH4_6g21293 Fragaria vesca HOM05D005267 ORTHO05D006303 4.0e-06 56.2 35 65.7


User provided reference genes

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