Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold41G15753 Striga asiatica HOM05D005001 ORTHO05D005796 0.0e+00 1563.5 793 100.0
MSTRG.3631 Avicennia marina HOM05D005001 ORTHO05D005796 1.3e-218 763.8 891 53.9
Migut.L00777 Erythranthe guttata HOM05D005001 ORTHO05D005796 1.0e-212 744.2 857 55.1
SalBow5G1781 Salvia bowleyana HOM05D005001 ORTHO05D005796 8.6e-191 671.4 847 50.5
Oeu042477.2 Olea europaea HOM05D005001 ORTHO05D005796 1.5e-190 670.6 831 51.0
Dinv08162 Davidia involucrata HOM05D005001 ORTHO05D005796 3.5e-184 649.4 896 47.8
SalBow3G4537 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.3e-178 630.9 882 47.7
SalBow3G0770 Salvia bowleyana HOM05D005001 ORTHO05D005796 1.1e-177 627.9 882 47.4
Dinv40189 Davidia involucrata HOM05D005001 ORTHO05D005796 2.3e-175 620.2 896 46.8
CSS0006057 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 5.2e-172 609.0 879 45.8
Cc07_g11880 Coffea canephora HOM05D005001 ORTHO05D005796 2.1e-168 597.0 900 44.8
Nitab4.5_0001467g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 7.3e-166 588.6 909 43.5
Nitab4.5_0004608g0060 Nicotiana tabacum HOM05D005001 ORTHO05D005796 8.1e-165 585.1 894 44.9
Solyc02g082680.4 Solanum lycopersicum HOM05D005001 ORTHO05D005796 4.0e-164 582.8 897 43.8
Peaxi162Scf01475g00020 Petunia axillaris HOM05D005001 ORTHO05D005796 6.8e-164 582.0 896 43.8
Sopen02g027420 Solanum pennellii HOM05D005001 ORTHO05D005796 6.8e-164 582.0 898 44.0
Actinidia22897 Actinidia chinensis HOM05D005001 ORTHO05D005796 9.9e-163 578.2 899 43.6
COL.COLO4_22551 Corchorus olitorius HOM05D005001 ORTHO05D005796 9.9e-163 578.2 882 44.9
Actinidia17358 Actinidia chinensis HOM05D005001 ORTHO05D005796 1.7e-162 577.4 898 44.1
Duzib147G1512 Durio zibethinus HOM05D005001 ORTHO05D005796 4.9e-162 575.9 892 44.3
PGSC0003DMG400001566 Solanum tuberosum HOM05D005001 ORTHO05D005796 5.4e-161 572.4 897 43.8
Rhsim10G0195500 Rhododendron simsii HOM05D005001 ORTHO05D005796 2.1e-160 570.5 863 44.7
Lj2C499T6 Lonicera japonica HOM05D005001 ORTHO05D005796 1.3e-159 567.8 862 45.0
Atru.chr3.132 Acer truncatum HOM05D005001 ORTHO05D005796 3.0e-159 566.6 890 43.9
Gohir.A02G177800 Gossypium hirsutum HOM05D005001 ORTHO05D005796 2.1e-157 560.5 884 44.0
Gorai.003G002300 Gossypium raimondii HOM05D005001 ORTHO05D005796 2.8e-157 560.1 888 43.7
QL06p052982 Quercus lobata HOM05D005001 ORTHO05D005796 2.8e-157 560.1 902 43.8
Gohir.D03G002000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 1.1e-156 558.1 891 43.7
Potri.005G101700 Populus trichocarpa HOM05D005001 ORTHO05D005796 1.8e-156 557.4 894 42.1
vmacro20631 Vaccinium macrocarpon HOM05D005001 ORTHO05D005796 4.0e-156 556.2 847 45.0
Manes.01G155500 Manihot esculenta HOM05D005001 ORTHO05D005796 1.9e-153 547.4 898 43.0
GSVIVG01026639001 Vitis vinifera HOM05D005001 ORTHO05D005796 1.9e-153 547.4 822 44.6
Sabra05G0084100 Salix brachista HOM05D005001 ORTHO05D005796 3.2e-153 546.6 894 43.3
CSS0002200 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.6e-152 544.3 890 42.7
Cpa.g.sc6.369 Carica papaya HOM05D005001 ORTHO05D005796 1.0e-151 541.6 906 42.2
Ciclev10024851m.g Citrus clementina HOM05D005001 ORTHO05D005796 1.0e-151 541.6 891 41.8
Prupe.7G183200 Prunus persica HOM05D005001 ORTHO05D005796 1.0e-151 541.6 895 41.5
Haze_03653 Corylus avellana HOM05D005001 ORTHO05D005796 2.5e-150 537.0 887 42.4
Manes.02G114100 Manihot esculenta HOM05D005001 ORTHO05D005796 7.3e-150 535.4 894 41.1
Cfa007079 Carpinus fangiana HOM05D005001 ORTHO05D005796 1.1e-148 531.6 895 42.0
ClCG10G000290 Citrullus lanatus HOM05D005001 ORTHO05D005796 1.1e-148 531.6 891 42.3
Thecc.01G005400 Theobroma cacao HOM05D005001 ORTHO05D005796 5.3e-148 529.3 834 43.4
TAR628G1461 Trochodendron aralioides HOM05D005001 ORTHO05D005796 2.0e-147 527.3 898 41.6
RcHm_v2.0_Chr2g0097131 Rosa chinensis HOM05D005001 ORTHO05D005796 6.4e-146 522.3 897 40.1
CsaV3_3G000320 Cucumis sativus L. HOM05D005001 ORTHO05D005796 9.3e-145 518.5 892 40.4
CSS0020393 Camellia sinensis var. sinensis HOM05D005001 ORTHO05D005796 1.2e-144 518.1 850 43.1
FAN26G0131 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.2e-144 518.1 899 40.2
FAN23G2126 Fragaria x ananassa HOM05D005001 ORTHO05D005796 2.1e-144 517.3 848 40.7
TWI09G0186 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 6.0e-144 515.8 894 40.7
CiPaw.07G002600 Carya illinoinensis HOM05D005001 ORTHO05D005796 5.1e-143 512.7 895 40.6
FvH4_1g10290 Fragaria vesca HOM05D005001 ORTHO05D005796 5.1e-143 512.7 899 39.9
FAN19G0848 Fragaria x ananassa HOM05D005001 ORTHO05D005796 5.6e-142 509.2 899 39.7
Glyma.11G086000 Glycine max HOM05D005001 ORTHO05D005796 1.3e-141 508.1 889 39.7
VMungo1215G1172 Vigna mungo HOM05D005001 ORTHO05D005796 2.1e-141 507.3 908 40.7
DCAR_002956 Daucus carota HOM05D005001 ORTHO05D005796 3.1e-140 503.4 878 40.4
MD15G1231000 Malus domestica HOM05D005001 ORTHO05D005796 2.0e-139 500.7 876 40.5
TWI53G0117 Tripterygium wilfordii HOM05D005001 ORTHO05D005796 4.5e-139 499.6 831 42.1
Glyma.01G158600 Glycine max HOM05D005001 ORTHO05D005796 9.9e-139 498.4 900 39.6
Gorai.001G199100 Gossypium raimondii HOM05D005001 ORTHO05D005796 1.3e-138 498.0 961 38.3
HanXRQChr16g0531881 Helianthus annuus HOM05D005001 ORTHO05D005796 4.9e-138 496.1 805 42.0
Nitab4.5_0005297g0010 Nicotiana tabacum HOM05D005001 ORTHO05D005796 4.9e-138 496.1 784 42.3
CANSAT25G0747 Cannabis sativa HOM05D005001 ORTHO05D005796 4.2e-137 493.0 880 40.6
MD02G1115000 Malus domestica HOM05D005001 ORTHO05D005796 6.0e-136 489.2 877 39.2
Phvul.002G116700 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 6.0e-136 489.2 903 39.9
Sed0016412 Sechium edule HOM05D005001 ORTHO05D005796 1.0e-135 488.4 887 39.7
Lsat_1_v5_gn_3_67981 Lactuca sativa HOM05D005001 ORTHO05D005796 1.9e-134 484.2 837 41.9
arahy.Tifrunner.gnm1.ann1.1YR532 Arachis hypogaea HOM05D005001 ORTHO05D005796 3.3e-134 483.4 901 39.2
arahy.Tifrunner.gnm1.ann1.XJ0R0A Arachis hypogaea HOM05D005001 ORTHO05D005796 3.3e-134 483.4 901 39.2
EL10Ac6g15057 Beta vulgaris HOM05D005001 ORTHO05D005796 9.6e-134 481.9 909 37.8
Nitab4.5_0000495g0110 Nicotiana tabacum HOM05D005001 ORTHO05D005796 6.9e-132 475.7 775 41.8
Aqoxy5G01010 Aquilegia oxysepala HOM05D005001 ORTHO05D005796 1.5e-131 474.6 867 38.1
MELO3C013726.2 Cucumis melo HOM05D005001 ORTHO05D005796 3.4e-131 473.4 895 38.2
Lj2g0010904 Lotus japonicus HOM05D005001 ORTHO05D005796 3.8e-130 469.9 903 38.6
Nn6g31704 Nelumbo nucifera HOM05D005001 ORTHO05D005796 4.9e-130 469.5 893 39.3
Ca_24983_v3 Cicer arietinum L. HOM05D005001 ORTHO05D005796 5.5e-129 466.1 877 38.8
ECA246G0522 Erigeron canadensis HOM05D005001 ORTHO05D005796 7.1e-129 465.7 727 44.7
Psat2g148080 Pisum sativum HOM05D005001 ORTHO05D005796 1.2e-128 464.9 876 38.9
CiPaw.08G181700 Carya illinoinensis HOM05D005001 ORTHO05D005796 3.5e-128 463.4 826 40.4
TPR.G33869 Trifolium pratense HOM05D005001 ORTHO05D005796 3.5e-128 463.4 876 38.4
Nn5g30991 Nelumbo nucifera HOM05D005001 ORTHO05D005796 4.6e-128 463.0 894 37.5
Peaxi162Scf00122g02417 Petunia axillaris HOM05D005001 ORTHO05D005796 2.3e-127 460.7 816 40.0
Lalb_Chr05g0214801 Lupinus albus HOM05D005001 ORTHO05D005796 5.1e-127 459.5 877 39.5
Medtr5g024240 Medicago truncatula HOM05D005001 ORTHO05D005796 2.6e-123 447.2 870 38.5
Sopen03g005960 Solanum pennellii HOM05D005001 ORTHO05D005796 3.0e-119 433.7 840 38.0
PGSC0003DMG400018683 Solanum tuberosum HOM05D005001 ORTHO05D005796 3.9e-119 433.3 851 38.4
Hund03602 Selenicereus undatus HOM05D005001 ORTHO05D005796 4.3e-118 429.9 958 35.1
AUR62003748 Chenopodium quinoa HOM05D005001 ORTHO05D005796 2.2e-117 427.6 940 35.5
Solyc03g032110.3 Solanum lycopersicum HOM05D005001 ORTHO05D005796 4.8e-117 426.4 840 37.9
Ah.02g122920 Amaranthus hybridus HOM05D005001 ORTHO05D005796 6.3e-117 426.0 897 36.5
AUR62002047 Chenopodium quinoa HOM05D005001 ORTHO05D005796 2.4e-116 424.1 949 35.2
Glyma.16G116100 Glycine max HOM05D005001 ORTHO05D005796 4.5e-115 419.9 874 37.8
MBI08_g12258_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.6e-112 411.4 947 34.6
Glyma.09G198000 Glycine max HOM05D005001 ORTHO05D005796 2.7e-112 410.6 865 36.3
PSO210G6136 Papaver somniferum HOM05D005001 ORTHO05D005796 4.6e-112 409.8 921 34.5
Phvul.003G270200 Phaseolus vulgaris HOM05D005001 ORTHO05D005796 3.9e-111 406.8 874 36.5
PSO761G0634 Papaver somniferum HOM05D005001 ORTHO05D005796 8.8e-111 405.6 919 34.2
VMungo0251G3365 Vigna mungo HOM05D005001 ORTHO05D005796 2.5e-110 404.1 865 36.2
THA.LOC104804295 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 3.7e-109 400.2 820 37.6
Thhalv10022564m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 8.2e-109 399.1 833 35.4
Eucgr.J02537 Eucalyptus grandis HOM05D005001 ORTHO05D005796 4.5e-107 393.3 604 44.2
PGR119G1974 Punica granatum HOM05D005001 ORTHO05D005796 5.9e-107 392.9 800 37.8
Sp3g30910 Schrenkiella parvula HOM05D005001 ORTHO05D005796 9.4e-105 385.6 843 35.6
AT2G17550 Arabidopsis thaliana HOM05D005001 ORTHO05D005796 7.9e-104 382.5 828 35.4
BcaC06g36289 Brassica carinata HOM05D005001 ORTHO05D005796 3.9e-103 380.2 817 36.2
Hund19695 Selenicereus undatus HOM05D005001 ORTHO05D005796 8.8e-103 379.0 896 34.9
A07p03420 Brassica napus HOM05D005001 ORTHO05D005796 1.5e-102 378.3 815 35.0
BraA07t28140Z Brassica rapa HOM05D005001 ORTHO05D005796 1.5e-102 378.3 815 35.0
Carub.0003s3164 Capsella rubella HOM05D005001 ORTHO05D005796 5.7e-102 376.3 821 34.3
AL3G50520 Arabidopsis lyrata HOM05D005001 ORTHO05D005796 2.8e-101 374.0 825 34.8
BcaB03g16525 Brassica carinata HOM05D005001 ORTHO05D005796 3.7e-101 373.6 818 34.5
C07p05710 Brassica napus HOM05D005001 ORTHO05D005796 7.0e-100 369.4 813 35.5
BolC7t40970H Brassica oleracea HOM05D005001 ORTHO05D005796 7.0e-100 369.4 813 35.5
Lalb_Chr16g0380031 Lupinus albus HOM05D005001 ORTHO05D005796 3.5e-99 367.1 668 41.0
CARHR107730 Cardamine hirsuta HOM05D005001 ORTHO05D005796 5.0e-98 363.2 822 34.5
ATR0807G148 Amborella trichopoda HOM05D005001 ORTHO05D005796 1.2e-96 358.6 822 34.8
Lj4g0000674 Lotus japonicus HOM05D005001 ORTHO05D005796 5.7e-94 349.7 848 34.6
Aa31LG8G14850 Aethionema arabicum HOM05D005001 ORTHO05D005796 6.8e-87 326.2 812 32.8
PSO675G2514 Papaver somniferum HOM05D005001 ORTHO05D005796 9.8e-86 322.4 868 34.2
arahy.Tifrunner.gnm1.ann1.3933SP Arachis hypogaea HOM05D005001 ORTHO05D005796 3.8e-82 310.5 815 32.6
Gohir.D07G178000 Gossypium hirsutum HOM05D005001 ORTHO05D005796 8.8e-79 299.3 686 35.9
THA.LOC104819718 Tarenaya hassleriana HOM05D005001 ORTHO05D005796 8.8e-79 299.3 798 33.6
PSO541G4728 Papaver somniferum HOM05D005001 ORTHO05D005796 3.4e-78 297.4 906 33.1
unitig_37.g12434 Utricularia gibba HOM05D005001 ORTHO05D005796 1.7e-77 295.0 406 47.3
Gohir.A07G171200 Gossypium hirsutum HOM05D005001 ORTHO05D005796 5.9e-75 286.6 657 36.2
MBI05_g14348_MAGBIO Magnolia biondii HOM05D005001 ORTHO05D005796 1.7e-74 285.0 857 31.4
Sc03g0003960 Simmondsia chinensis HOM05D005001 ORTHO05D005796 3.4e-70 270.8 587 37.6
Os03g0130700 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 1.6e-64 251.9 914 28.6
HPP92_007108 Vanilla planifolia HOM05D005001 ORTHO05D005796 2.1e-56 224.9 913 28.1
Lj4A237T62 Lonicera japonica HOM05D005001 ORTHO05D005796 2.8e-56 224.6 458 37.6
Zm00001eb002440 Zea mays HOM05D005001 ORTHO05D005796 4.7e-56 223.8 920 27.2
Os06g0728200 Oryza sativa ssp. japonica HOM05D005001 ORTHO05D005796 4.7e-40 170.6 883 25.4
unitig_37.g12435 Utricularia gibba HOM05D005001 ORTHO05D005796 4.0e-39 167.5 311 39.5
Medtr5g025350 Medicago truncatula HOM05D005001 ORTHO05D005796 1.4e-36 159.1 255 45.1
arahy.Tifrunner.gnm1.ann1.8C07DS Arachis hypogaea HOM05D005001 ORTHO05D005796 2.5e-33 148.3 537 29.2
FAN28G2205 Fragaria x ananassa HOM05D005001 ORTHO05D005796 1.1e-31 142.9 185 42.7
Lj4P237T25 Lonicera japonica HOM05D005001 ORTHO05D005796 4.6e-27 127.5 197 39.6
HPP92_022687 Vanilla planifolia HOM05D005001 ORTHO05D005796 9.6e-25 119.8 396 30.3
Lalb_Chr16g0380041 Lupinus albus HOM05D005001 ORTHO05D005796 2.4e-23 115.2 219 36.5
Thhalv10023126m.g Eutrema salsugineum HOM05D005001 ORTHO05D005796 6.9e-23 113.6 225 32.0
CDE05G1993 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 5.8e-22 110.5 580 26.0
CDE05G3420 Ceratophyllum demersum HOM05D005001 ORTHO05D005796 5.1e-18 97.4 456 25.4
HPP92_022688 Vanilla planifolia HOM05D005001 ORTHO05D005796 4.9e-13 80.9 282 29.1
SEGI_23141 Sequoiadendron giganteum HOM05D002769 ORTHO05D001913 3.3e-09 68.2 167 31.7
SEGI_39803 Sequoiadendron giganteum HOM05D002769 ORTHO05D003160 8.2e-08 63.5 241 25.7
ATR0759G019 Amborella trichopoda HOM05D002769 ORTHO05D001913 1.1e-07 63.2 270 26.7
Dinv23669 Davidia involucrata HOM05D005001 ORTHO05D005796 4.1e-07 61.2 155 35.5
Pp3c9_5030 Physcomitrium patens HOM05D031362 ORTHO05D002722 6.9e-07 60.5 193 32.6
Dinv30187 Davidia involucrata HOM05D005001 ORTHO05D005796 5.9e-06 57.4 135 36.3


User provided reference genes

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