Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 9.6e-161 570.1 282 100.0
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 1.8e-95 353.2 219 75.3
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 6.5e-93 344.7 232 69.8
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.3e-90 336.3 243 67.1
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 3.8e-85 318.9 204 71.1
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 2.4e-79 299.7 215 68.4
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 5.4e-79 298.5 224 63.8
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 7.7e-78 294.7 225 61.3
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 1.3e-77 293.9 211 63.5
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 2.9e-77 292.7 204 64.2
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 5.0e-77 292.0 204 62.7
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 8.6e-77 291.2 224 62.5
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 8.6e-77 291.2 211 63.5
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 8.6e-77 291.2 192 68.2
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 5.6e-76 288.5 206 63.6
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 7.2e-76 288.1 209 64.1
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 7.2e-76 288.1 218 61.9
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 9.5e-76 287.7 212 61.8
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 1.2e-75 287.3 209 65.6
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.8e-75 286.2 205 63.4
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.7e-75 285.4 233 59.7
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 8.0e-75 284.6 224 59.4
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 8.0e-75 284.6 225 60.0
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 4.0e-74 282.3 239 58.2
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 5.2e-74 282.0 204 63.7
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 1.2e-73 280.8 230 58.7
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.2e-73 280.8 211 64.0
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 2.0e-73 280.0 204 61.8
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 2.0e-73 280.0 205 61.5
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 2.6e-73 279.6 214 62.6
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 3.4e-73 279.3 225 58.7
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.3e-72 277.3 204 61.3
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.3e-72 277.3 192 65.1
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 3.7e-72 275.8 204 62.3
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 3.7e-72 275.8 232 58.2
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 6.4e-72 275.0 225 59.1
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 1.4e-71 273.9 204 59.8
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 2.4e-71 273.1 206 61.7
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 7.0e-71 271.6 190 65.3
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 9.2e-71 271.2 224 58.0
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 9.2e-71 271.2 192 64.1
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.6e-70 270.4 228 56.1
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 2.7e-70 269.6 232 53.9
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 4.6e-70 268.9 202 62.4
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.3e-69 266.5 200 62.5
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 3.9e-69 265.8 173 71.1
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 1.1e-68 264.2 216 56.9
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 1.9e-68 263.5 204 59.3
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 3.3e-68 262.7 213 58.2
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 3.3e-68 262.7 190 62.6
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 9.5e-68 261.2 212 58.0
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 9.5e-68 261.2 222 55.0
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 1.6e-67 260.4 199 62.3
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 2.1e-67 260.0 205 59.0
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 2.8e-67 259.6 214 55.6
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 2.3e-66 256.5 192 60.4
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 4.0e-66 255.8 192 60.9
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 4.0e-66 255.8 192 60.9
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 5.2e-66 255.4 211 57.8
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 5.2e-66 255.4 220 55.0
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 8.9e-66 254.6 187 61.5
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 8.9e-66 254.6 236 51.7
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 1.2e-65 254.2 192 60.9
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 1.5e-65 253.8 231 51.9
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 5.8e-65 251.9 204 55.9
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 9.8e-65 251.1 193 57.0
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.2e-64 250.0 218 56.4
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 2.2e-64 250.0 200 57.0
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 3.7e-64 249.2 213 52.1
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 3.7e-64 249.2 214 52.3
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 8.3e-64 248.1 229 51.5
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.4e-63 247.3 188 60.6
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 4.1e-63 245.7 204 54.9
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 5.4e-63 245.4 208 54.3
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 7.0e-63 245.0 242 50.4
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 7.0e-63 245.0 192 57.3
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 9.2e-63 244.6 208 54.8
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 9.2e-63 244.6 173 64.2
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 1.2e-62 244.2 199 56.3
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 1.6e-62 243.8 228 50.4
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 1.6e-62 243.8 200 53.5
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.7e-62 243.0 211 57.3
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 3.5e-62 242.7 212 52.8
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 3.5e-62 242.7 212 52.8
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 6.0e-62 241.9 208 54.3
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-61 240.7 200 55.5
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-61 240.7 200 55.5
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 6.6e-61 238.4 193 56.5
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 8.6e-61 238.0 200 54.5
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 1.5e-60 237.3 204 55.9
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.9e-60 236.9 249 52.2
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 2.5e-60 236.5 214 53.7
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 4.3e-60 235.7 198 53.5
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 5.6e-60 235.3 200 54.0
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 1.2e-59 234.2 198 54.0
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 1.2e-59 234.2 198 54.0
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 1.6e-59 233.8 201 54.7
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 2.1e-59 233.4 200 58.0
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 2.8e-59 233.0 180 57.8
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 3.6e-59 232.6 201 54.2
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 6.2e-59 231.9 173 63.0
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.4e-58 230.7 211 52.6
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 3.4e-57 226.1 189 55.0
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 3.7e-56 222.6 173 60.7
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 4.9e-56 222.2 167 61.1
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 1.1e-55 221.1 197 52.3
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 9.2e-55 218.0 185 51.4
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 1.2e-54 217.6 163 63.8
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 2.7e-54 216.5 225 52.0
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 3.5e-54 216.1 218 48.2
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 6.0e-54 215.3 227 47.6
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 2.3e-53 213.4 211 49.3
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 3.0e-53 213.0 229 48.0
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 3.0e-53 213.0 203 54.2
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 3.0e-53 213.0 211 48.8
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.5e-52 210.7 214 50.0
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 2.3e-50 203.4 235 46.4
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 5.2e-50 202.2 204 52.5
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 2.6e-49 199.9 120 70.8
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 1.3e-48 197.6 204 50.5
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 1.3e-45 187.6 267 44.6
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 6.6e-45 185.3 173 54.9
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 7.3e-44 181.8 190 44.7
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 3.6e-43 179.5 232 42.2
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 5.2e-42 175.6 108 71.3
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 6.8e-42 175.3 130 55.4
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 2.2e-40 170.2 260 40.4
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 9.3e-39 164.9 259 38.2
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 9.3e-39 164.9 209 43.1
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 3.0e-37 159.8 149 57.7
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 3.5e-30 136.3 156 44.9
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 4.9e-24 115.9 79 58.2
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 1.6e-22 110.9 98 54.1
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.9e-20 104.0 59 76.3
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 5.6e-20 102.4 75 62.7
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 2.1e-19 100.5 94 54.3
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 6.2e-19 99.0 61 68.9
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 4.0e-18 96.3 73 54.8
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 2.7e-14 83.6 123 45.5
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 1.3e-13 81.3 45 66.7
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 7.4e-12 75.5 52 65.4
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 7.4e-12 75.5 100 44.0
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 1.3e-11 74.7 49 69.4
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 3.7e-11 73.2 131 32.8
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 1.4e-10 71.2 158 30.4
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 2.4e-10 70.5 55 50.9
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 2.4e-10 70.5 100 39.0
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.1e-10 70.1 100 41.0
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 3.1e-10 70.1 51 62.7
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 2.9e-08 63.5 33 72.7
Actinidia18259 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.8e-08 63.2 52 59.6
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 2.1e-06 57.4 26 80.8


User provided reference genes

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