Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 3.2e-130 468.4 232 100.0
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 9.5e-82 307.4 225 69.8
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 1.4e-80 303.5 230 68.3
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 5.2e-80 301.6 224 69.2
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 1.2e-73 280.4 171 78.9
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 8.1e-73 277.7 169 76.9
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.8e-72 276.6 167 77.8
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 2.3e-72 276.2 164 79.9
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.3e-72 276.2 168 78.0
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.1e-72 275.8 171 78.9
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 4.0e-72 275.4 169 76.3
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.2e-71 273.9 232 64.2
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.5e-71 273.5 182 73.1
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 2.0e-71 273.1 171 77.8
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.0e-71 273.1 179 73.7
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 2.6e-71 272.7 168 77.4
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.9e-70 269.2 224 62.9
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.7e-70 268.9 163 77.3
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 3.7e-70 268.9 160 80.0
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 4.9e-70 268.5 171 75.4
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 6.4e-70 268.1 229 64.2
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 6.4e-70 268.1 171 76.0
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 6.4e-70 268.1 216 64.8
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 1.1e-69 267.3 161 78.3
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 1.1e-69 267.3 164 76.2
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 1.1e-69 267.3 164 76.2
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 1.9e-69 266.5 228 62.7
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 2.4e-69 266.2 180 70.0
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 2.4e-69 266.2 177 72.9
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 2.4e-69 266.2 171 74.9
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 3.2e-69 265.8 205 68.3
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 5.4e-69 265.0 226 62.8
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 7.1e-69 264.6 162 76.5
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 7.1e-69 264.6 212 64.2
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.2e-68 263.8 210 63.8
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 1.6e-68 263.5 167 74.3
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 2.1e-68 263.1 227 63.0
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 6.0e-68 261.5 223 61.0
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 1.3e-67 260.4 175 69.7
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 1.3e-67 260.4 175 70.3
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 1.7e-67 260.0 161 74.5
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 2.3e-67 259.6 166 74.1
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 3.9e-67 258.8 161 74.5
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 5.1e-67 258.5 237 62.4
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 4.3e-66 255.4 214 61.7
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 5.6e-66 255.0 167 70.7
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 7.3e-66 254.6 234 60.3
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.2e-65 253.8 239 58.6
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.6e-65 253.4 211 61.6
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.4e-64 250.4 244 53.7
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 3.1e-64 249.2 161 73.3
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 3.1e-64 249.2 229 57.6
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 4.0e-64 248.8 161 73.3
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.0e-64 248.8 156 73.7
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 8.9e-64 247.7 161 72.7
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 1.5e-63 246.9 164 72.6
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.0e-63 246.5 164 68.9
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 4.4e-63 245.4 164 68.3
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 7.6e-63 244.6 171 70.2
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.3e-62 243.8 164 67.7
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.7e-62 243.4 158 73.4
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 2.9e-62 242.7 153 75.2
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 4.9e-62 241.9 160 71.9
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 6.4e-62 241.5 233 54.1
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 1.9e-61 240.0 163 69.9
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.9e-61 240.0 168 67.9
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.4e-61 239.6 160 70.6
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 2.4e-61 239.6 166 70.5
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.2e-61 239.2 156 72.4
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.1e-61 238.8 178 66.3
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.6e-60 236.9 159 69.2
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 2.1e-60 236.5 229 54.6
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 7.8e-60 234.6 207 58.9
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 7.8e-60 234.6 156 70.5
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 7.8e-60 234.6 162 71.0
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.3e-59 233.8 227 55.1
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.3e-59 233.8 228 55.7
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.3e-59 233.8 137 78.1
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 6.6e-59 231.5 149 73.8
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 6.6e-59 231.5 175 67.4
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 3.6e-57 225.7 188 63.3
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 6.2e-57 224.9 227 59.0
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 1.4e-56 223.8 172 65.1
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 1.4e-56 223.8 138 76.1
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 1.5e-55 220.3 167 66.5
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 4.4e-55 218.8 232 52.6
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 4.4e-55 218.8 164 65.9
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 5.8e-55 218.4 235 51.9
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.3e-54 217.2 219 53.0
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 2.2e-54 216.5 211 57.8
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 4.9e-54 215.3 142 72.5
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.9e-53 213.4 162 61.1
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 3.5e-52 209.1 160 60.0
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.6e-52 208.8 157 60.5
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.6e-52 208.8 157 60.5
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 7.8e-52 208.0 207 51.7
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 7.8e-52 208.0 122 77.0
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.0e-51 207.6 163 60.1
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 2.3e-51 206.5 163 58.9
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 1.1e-50 204.1 244 48.4
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.5e-50 203.8 157 61.1
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 1.5e-50 203.8 178 59.6
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 7.3e-50 201.4 258 46.1
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.6e-49 200.3 126 69.8
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.2e-49 198.4 166 56.6
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 8.1e-49 198.0 120 75.8
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 8.1e-49 198.0 161 59.6
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-48 196.8 159 59.7
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 4.0e-48 195.7 148 64.9
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 9.0e-48 194.5 165 57.6
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 2.0e-47 193.4 159 56.6
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 2.6e-47 193.0 161 55.9
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.6e-47 193.0 161 55.3
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 5.8e-47 191.8 137 65.7
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.3e-46 190.7 161 60.2
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 6.4e-46 188.3 212 47.2
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 9.3e-45 184.5 158 53.2
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.6e-44 183.7 231 43.7
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.1e-44 183.3 94 83.0
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 3.5e-44 182.6 99 79.8
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 4.6e-44 182.2 153 54.9
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 4.6e-44 182.2 156 53.2
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 6.0e-44 181.8 156 52.6
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 1.0e-43 181.0 103 77.7
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 8.7e-43 177.9 119 69.7
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 3.3e-42 176.0 156 50.6
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 3.3e-42 176.0 156 50.6
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 4.3e-42 175.6 156 50.6
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 4.3e-42 175.6 156 50.6
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 5.6e-42 175.3 158 52.5
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 7.4e-42 174.9 230 44.8
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 9.6e-42 174.5 195 50.3
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 4.8e-41 172.2 156 50.0
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 4.8e-41 172.2 156 50.0
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 6.2e-41 171.8 113 68.1
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 8.1e-41 171.4 156 50.0
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.2e-39 167.5 145 54.5
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.0e-39 166.8 158 53.8
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 2.9e-38 162.9 173 53.8
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.9e-38 162.2 154 45.5
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 2.3e-35 153.3 161 52.2
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 1.9e-34 150.2 130 51.5
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 3.3e-34 149.4 132 50.0
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.1e-33 146.7 147 56.5
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.8e-33 146.4 166 45.2
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 6.2e-33 145.2 162 50.0
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.1e-32 144.4 131 57.3
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 1.8e-32 143.7 140 54.3
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 2.4e-32 143.3 155 51.0
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 9.0e-32 141.4 149 44.3
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 5.8e-31 138.7 157 49.7
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 4.2e-29 132.5 64 92.2
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 3.5e-28 129.4 152 41.4
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 1.9e-26 123.6 65 83.1
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 2.2e-25 120.2 164 47.0
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 4.1e-24 115.9 146 42.5
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 7.6e-23 111.7 151 37.7
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.3e-22 110.9 72 70.8
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 2.2e-22 110.2 204 36.3
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 5.1e-19 99.0 56 75.0
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 4.3e-18 95.9 57 82.5
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 2.9e-14 83.2 85 52.9
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 5.0e-14 82.4 103 44.7
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 6.1e-12 75.5 45 73.3
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 2.3e-11 73.6 45 66.7
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 8.8e-11 71.6 43 67.4
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 1.3e-09 67.8 108 39.8
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-09 67.4 112 38.4
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.9e-07 58.9 54 63.0
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 5.9e-07 58.9 54 63.0


User provided reference genes

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