Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 8.7e-102 373.6 187 100.0
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 1.1e-99 366.7 187 96.8
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 2.6e-98 362.1 187 95.7
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 3.8e-97 358.2 187 94.1
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 4.9e-97 357.8 187 94.1
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 92.5
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.2e-96 355.1 187 92.5
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 3.2e-96 355.1 187 91.4
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.0
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 92.0
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 90.9
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 93.0
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 90.4
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 90.9
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 91.4
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 91.4
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 9.3e-96 353.6 187 91.4
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 91.4
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 90.9
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 90.9
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 90.9
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 90.4
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 91.4
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 2.7e-95 352.1 186 89.8
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 2.7e-95 352.1 187 91.4
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 90.9
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 91.4
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 90.9
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 90.4
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 88.8
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 90.4
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 90.9
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 90.9
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 89.8
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.3
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.3
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.3
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 90.9
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.3
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 90.4
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.0e-94 350.1 185 91.9
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 1.0e-94 350.1 196 88.8
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 90.4
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 89.8
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 89.3
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.3
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 88.8
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.3
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.3
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.3
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.8
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 2.3e-94 349.0 181 93.4
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 88.2
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 88.8
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 88.8
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 2.3e-94 349.0 182 91.2
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.8
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 3.0e-94 348.6 187 89.3
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 89.8
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 90.4
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 5.1e-94 347.8 187 88.8
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 6.7e-94 347.4 187 88.2
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 87.7
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 89.8
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 89.8
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 88.2
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 87.2
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 89.8
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 87.7
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.3
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 87.2
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 89.3
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 3.3e-93 345.1 186 89.8
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 3.3e-93 345.1 183 92.9
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 88.2
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 88.2
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 5.7e-93 344.4 184 89.1
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 89.3
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 87.2
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.8
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.2
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.2
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 9.6e-93 343.6 185 88.1
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 9.6e-93 343.6 185 88.1
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 88.8
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 1.6e-92 342.8 186 87.1
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 88.2
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 86.6
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 87.2
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 87.2
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 87.7
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 87.7
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 87.7
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 4.8e-92 341.3 200 83.5
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 88.2
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 86.6
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 1.1e-91 340.1 201 83.6
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 86.6
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 85.6
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 87.2
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 86.1
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 86.1
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 86.6
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 86.6
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 86.6
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 86.6
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 9.0e-91 337.0 187 86.6
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.2e-90 336.7 182 87.4
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 1.2e-90 336.7 182 87.4
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 1.2e-90 336.7 206 81.6
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.0e-90 335.9 187 86.6
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 7.6e-90 334.0 187 84.5
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 1.7e-89 332.8 193 83.4
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 2.5e-88 328.9 203 78.8
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 3.2e-88 328.6 187 84.0
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 9.3e-88 327.0 206 79.1
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.1e-87 325.9 208 76.9
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 1.8e-86 322.8 241 68.9
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 5.1e-86 321.2 173 88.4
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 5.1e-86 321.2 211 77.3
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 7.4e-85 317.4 186 81.2
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.5e-82 309.7 167 86.2
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 2.9e-81 305.4 185 76.2
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 5.5e-80 301.2 169 84.0
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 9.4e-80 300.4 187 74.9
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 7.9e-79 297.4 187 73.3
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 7.9e-79 297.4 187 73.3
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 6.7e-78 294.3 187 79.7
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.5e-77 293.1 187 72.2
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.7e-77 291.2 187 77.0
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.3e-76 290.0 158 89.2
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 1.4e-75 286.6 187 72.2
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.4e-75 286.6 187 76.5
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.4e-75 285.8 172 75.6
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 6.9e-75 284.3 180 75.0
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 2.0e-74 282.7 185 77.3
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 2.6e-74 282.3 154 87.7
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 5.9e-74 281.2 149 91.3
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 5.0e-73 278.1 187 73.8
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.7e-71 272.3 148 87.8
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 1.0e-70 270.4 187 73.3
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 1.4e-67 260.0 214 60.3
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.4e-67 260.0 158 79.1
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 4.0e-62 241.9 173 63.6
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 5.2e-62 241.5 187 67.4
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 9.7e-61 237.3 187 65.8
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 2.9e-57 225.7 124 87.9
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.5e-53 213.4 133 74.4
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 2.0e-50 203.0 103 91.3
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 1.0e-49 200.7 167 56.3
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 1.2e-47 193.7 139 69.8
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 2.1e-47 193.0 106 86.8
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 1.0e-46 190.7 175 53.1
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.8e-46 189.9 98 87.8
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 5.2e-46 188.3 103 82.5
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 1.3e-44 183.7 181 57.5
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 3.5e-42 175.6 98 80.6
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 7.5e-37 157.9 85 89.4
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 5.2e-30 135.2 142 54.9
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 6.8e-22 108.2 68 73.5
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.1e-18 96.7 52 92.3
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 5.1e-17 92.0 52 84.6
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 1.6e-15 87.0 49 85.7
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 4.0e-14 82.4 41 92.7
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 1.7e-12 77.0 45 80.0
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.2e-12 76.6 68 57.4
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.2e-12 76.6 70 61.4
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 4.9e-12 75.5 47 78.7
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 6.4e-12 75.1 41 82.9
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 7.1e-11 71.6 39 79.5


User provided reference genes

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