Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold413G51179 Striga asiatica HOM05D003123 ORTHO05D003492 6.0e-64 247.3 120 100.0
SGA_v2.0_scaffold106G30554 Striga asiatica HOM05D003123 ORTHO05D003492 1.9e-33 146.0 89 77.5
Lj2C730T10 Lonicera japonica HOM05D003123 ORTHO05D003492 2.4e-28 129.0 88 70.5
Oeu060760.2 Olea europaea HOM05D003123 ORTHO05D003492 5.3e-28 127.9 84 72.6
SalBow1G3749 Salvia bowleyana HOM05D003123 ORTHO05D003492 9.1e-28 127.1 89 68.5
SalBow1G3093 Salvia bowleyana HOM05D003123 ORTHO05D003492 6.5e-26 120.9 88 65.9
Migut.K00168 Erythranthe guttata HOM05D003123 ORTHO05D003492 8.5e-26 120.6 87 67.8
ECA240G3446 Erigeron canadensis HOM05D003123 ORTHO05D003492 1.5e-25 119.8 110 54.5
FAN07G0983 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.5e-25 119.0 83 66.3
FAN12G0368 Fragaria x ananassa HOM05D003123 ORTHO05D003492 3.2e-25 118.6 83 66.3
FAN12G2362 Fragaria x ananassa HOM05D003123 ORTHO05D003492 3.2e-25 118.6 83 66.3
RcHm_v2.0_Chr2g0090591 Rosa chinensis HOM05D003123 ORTHO05D003492 4.2e-25 118.2 76 71.1
Nn1g02901 Nelumbo nucifera HOM05D003123 ORTHO05D003492 9.4e-25 117.1 86 64.0
Prupe.1G551600 Prunus persica HOM05D003123 ORTHO05D003492 2.1e-24 115.9 80 72.5
TAR636G3452 Trochodendron aralioides HOM05D003123 ORTHO05D003492 2.1e-24 115.9 82 69.5
HanXRQChr17g0548851 Helianthus annuus HOM05D003123 ORTHO05D003492 2.7e-24 115.5 96 57.3
MD15G1186700 Malus domestica HOM05D003123 ORTHO05D003492 2.7e-24 115.5 94 60.6
AUR62018436 Chenopodium quinoa HOM05D003123 ORTHO05D003492 3.6e-24 115.2 87 64.4
Dinv40311 Davidia involucrata HOM05D003123 ORTHO05D003492 3.6e-24 115.2 89 61.8
Nitab4.5_0001270g0190 Nicotiana tabacum HOM05D003123 ORTHO05D003492 4.7e-24 114.8 96 59.4
TWI60G0704 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 4.7e-24 114.8 88 61.4
Nitab4.5_0000123g0230 Nicotiana tabacum HOM05D003123 ORTHO05D003492 6.1e-24 114.4 93 60.2
Nitab4.5_0006880g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 1.8e-23 112.8 94 60.6
Oeu023005.1 Olea europaea HOM05D003123 ORTHO05D003492 1.8e-23 112.8 83 67.5
Peaxi162Scf00324g00531 Petunia axillaris HOM05D003123 ORTHO05D003492 1.8e-23 112.8 93 58.1
Cfa020612 Carpinus fangiana HOM05D003123 ORTHO05D003492 2.3e-23 112.5 81 69.1
FvH4_1g04960 Fragaria vesca HOM05D003123 ORTHO05D003492 2.3e-23 112.5 86 64.0
FAN19G0040 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.3e-23 112.5 86 64.0
FAN23G0770 Fragaria x ananassa HOM05D003123 ORTHO05D003492 2.3e-23 112.5 86 64.0
Nitab4.5_0012379g0010 Nicotiana tabacum HOM05D003123 ORTHO05D003492 2.3e-23 112.5 95 58.9
Gorai.009G128000 Gossypium raimondii HOM05D003123 ORTHO05D003492 3.0e-23 112.1 97 58.8
QL09p005009 Quercus lobata HOM05D003123 ORTHO05D003492 4.0e-23 111.7 92 59.8
TWI18G0703 Tripterygium wilfordii HOM05D003123 ORTHO05D003492 4.0e-23 111.7 78 65.4
Cfa008143 Carpinus fangiana HOM05D003123 ORTHO05D003492 5.2e-23 111.3 81 71.6
MD02G1048300 Malus domestica HOM05D003123 ORTHO05D003492 5.2e-23 111.3 109 54.1
Gohir.D05G124000 Gossypium hirsutum HOM05D003123 ORTHO05D003492 6.7e-23 110.9 86 64.0
Actinidia37868 Actinidia chinensis HOM05D003123 ORTHO05D003492 8.8e-23 110.5 83 59.0
MD15G1411000 Malus domestica HOM05D003123 ORTHO05D003492 8.8e-23 110.5 91 61.5
Actinidia17974 Actinidia chinensis HOM05D003123 ORTHO05D003492 1.2e-22 110.2 83 60.2
AUR62020997 Chenopodium quinoa HOM05D003123 ORTHO05D003492 1.2e-22 110.2 87 63.2
Gohir.A05G123100 Gossypium hirsutum HOM05D003123 ORTHO05D003492 1.2e-22 110.2 86 62.8
unitig_0.g2667 Utricularia gibba HOM05D003123 ORTHO05D003492 1.5e-22 109.8 86 61.6
Gorai.009G288800 Gossypium raimondii HOM05D003123 ORTHO05D003492 2.0e-22 109.4 83 63.9
Cpa.g.sc66.20 Carica papaya HOM05D003123 ORTHO05D003492 2.6e-22 109.0 93 59.1
COL.COLO4_33458 Corchorus olitorius HOM05D003123 ORTHO05D003492 2.6e-22 109.0 82 63.4
Thecc.08G187200 Theobroma cacao HOM05D003123 ORTHO05D003492 2.6e-22 109.0 86 61.6
Atru.chr10.2419 Acer truncatum HOM05D003123 ORTHO05D003492 3.3e-22 108.6 76 71.1
Cfa008139 Carpinus fangiana HOM05D003123 ORTHO05D003492 3.3e-22 108.6 81 69.1
FAN26G3425 Fragaria x ananassa HOM05D003123 ORTHO05D003492 3.3e-22 108.6 86 61.6
Potri.019G081100 Populus trichocarpa HOM05D003123 ORTHO05D003492 4.4e-22 108.2 90 62.2
Atru.chr7.2717 Acer truncatum HOM05D003123 ORTHO05D003492 5.7e-22 107.8 75 66.7
Hma1.2p1_0016F.1_g010890 Hydrangea macrophylla HOM05D003123 ORTHO05D003492 5.7e-22 107.8 81 61.7
Potri.013G108600 Populus trichocarpa HOM05D003123 ORTHO05D003492 5.7e-22 107.8 94 60.6
Eucgr.C02983 Eucalyptus grandis HOM05D003123 ORTHO05D003492 9.7e-22 107.1 95 56.8
Eucgr.A00553 Eucalyptus grandis HOM05D003123 ORTHO05D003492 2.2e-21 105.9 97 57.7
HanXRQChr10g0308101 Helianthus annuus HOM05D003123 ORTHO05D003492 2.2e-21 105.9 93 59.1
Manes.02G205100 Manihot esculenta HOM05D003123 ORTHO05D003492 2.2e-21 105.9 89 62.9
Sabra13G0093900 Salix brachista HOM05D003123 ORTHO05D003492 2.2e-21 105.9 83 63.9
TPR.G22518 Trifolium pratense HOM05D003123 ORTHO05D003492 2.2e-21 105.9 91 60.4
CiPaw.04G013100 Carya illinoinensis HOM05D003123 ORTHO05D003492 2.8e-21 105.5 78 65.4
Duzib235G1283 Durio zibethinus HOM05D003123 ORTHO05D003492 3.7e-21 105.1 86 60.5
MBI03_g18675_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 8.3e-21 104.0 72 62.5
Manes.02G195200 Manihot esculenta HOM05D003123 ORTHO05D003492 8.3e-21 104.0 88 59.1
Aqoxy3G04121 Aquilegia oxysepala HOM05D003123 ORTHO05D003492 1.1e-20 103.6 86 60.5
arahy.Tifrunner.gnm1.ann1.SAB2K2 Arachis hypogaea HOM05D003123 ORTHO05D003492 1.1e-20 103.6 95 51.6
Peaxi162Scf00538g00224 Petunia axillaris HOM05D003123 ORTHO05D003492 1.1e-20 103.6 102 50.0
MBI01_g42407_MAGBIO Magnolia biondii HOM05D003123 ORTHO05D003492 2.4e-20 102.4 73 61.6
PSO339G0960 Papaver somniferum HOM05D003123 ORTHO05D003492 3.1e-20 102.1 92 58.7
PGR042G0103 Punica granatum HOM05D003123 ORTHO05D003492 3.1e-20 102.1 93 59.1
Sabra19G0092000 Salix brachista HOM05D003123 ORTHO05D003492 3.1e-20 102.1 91 54.9
arahy.Tifrunner.gnm1.ann1.HV9XRS Arachis hypogaea HOM05D003123 ORTHO05D003492 4.1e-20 101.7 90 54.4
arahy.Tifrunner.gnm1.ann1.W2RGT3 Arachis hypogaea HOM05D003123 ORTHO05D003492 4.1e-20 101.7 90 54.4
Sc25g0005590 Simmondsia chinensis HOM05D003123 ORTHO05D003492 7.0e-20 100.9 70 65.7
TPR.G1421 Trifolium pratense HOM05D003123 ORTHO05D003492 1.2e-19 100.1 89 58.4
ECA234G4206 Erigeron canadensis HOM05D001066 ORTHO05D000891 1.6e-19 99.8 76 65.8
Ciclev10012016m.g Citrus clementina HOM05D003123 ORTHO05D003492 4.5e-19 98.2 91 52.7
PSO384G3002 Papaver somniferum HOM05D003123 ORTHO05D003492 4.5e-19 98.2 97 54.6
LjContig00238g0006541 Lotus japonicus HOM05D003123 ORTHO05D003492 7.7e-19 97.4 87 55.2
Glyma.02G293300 Glycine max HOM05D003123 ORTHO05D003492 1.0e-18 97.1 88 53.4
ATR1136G200 Amborella trichopoda HOM05D003123 ORTHO05D003492 1.3e-18 96.7 78 61.5
THA.LOC104800122 Tarenaya hassleriana HOM05D003123 ORTHO05D003492 2.9e-18 95.5 92 54.3
CSS0039589 Camellia sinensis var. sinensis HOM05D003123 ORTHO05D003492 5.0e-18 94.7 90 51.1
Lalb_Chr04g0264161 Lupinus albus HOM05D003123 ORTHO05D003492 5.0e-18 94.7 78 59.0
vmacro21662 Vaccinium macrocarpon HOM05D003123 ORTHO05D003492 5.0e-18 94.7 88 54.5
FAN28G0861 Fragaria x ananassa HOM05D003123 ORTHO05D003492 6.5e-18 94.4 91 56.0
EL10Ac3g07342 Beta vulgaris HOM05D003123 ORTHO05D003492 8.5e-18 94.0 89 56.2
VMungo0647G0944 Vigna mungo HOM05D003123 ORTHO05D003492 1.1e-17 93.6 88 54.5
ATR1136G090 Amborella trichopoda HOM05D003123 ORTHO05D003492 1.5e-17 93.2 84 56.0
Lj3g0017551 Lotus japonicus HOM05D003123 ORTHO05D003492 1.9e-17 92.8 87 51.7
Psat0s935g0040 Pisum sativum HOM05D005409 ORTHO05D006456 1.9e-17 92.8 80 58.8
THA.LOC104818694 Tarenaya hassleriana HOM05D003123 ORTHO05D003492 1.9e-17 92.8 81 55.6
BcaC08g45739 Brassica carinata HOM05D003123 ORTHO05D003492 2.1e-16 89.4 78 56.4
C06p35180 Brassica napus HOM05D003123 ORTHO05D003492 2.1e-16 89.4 78 56.4
BolC6t38625H Brassica oleracea HOM05D003123 ORTHO05D003492 2.1e-16 89.4 78 56.4
Aa31LG4G8580 Aethionema arabicum HOM05D003123 ORTHO05D003492 2.7e-16 89.0 79 54.4
Sp5g27120 Schrenkiella parvula HOM05D003123 ORTHO05D003492 3.6e-16 88.6 78 57.7
A02p17650 Brassica napus HOM05D003123 ORTHO05D003492 4.7e-16 88.2 98 51.0
A07p30420 Brassica napus HOM05D003123 ORTHO05D003492 4.7e-16 88.2 77 54.5
BraA07t30679Z Brassica rapa HOM05D003123 ORTHO05D003492 4.7e-16 88.2 77 54.5
BcaB03g15643 Brassica carinata HOM05D003123 ORTHO05D003492 8.0e-16 87.4 101 47.5
CARHR064860 Cardamine hirsuta HOM05D003123 ORTHO05D003492 1.0e-15 87.0 93 52.7
BcaC03g15328 Brassica carinata HOM05D003123 ORTHO05D003492 1.8e-15 86.3 93 49.5
BcaB05g24702 Brassica carinata HOM05D003123 ORTHO05D003492 3.0e-15 85.5 78 55.1
Thhalv10018661m.g Eutrema salsugineum HOM05D003123 ORTHO05D003492 6.8e-15 84.3 92 50.0
Os02g0116000 Oryza sativa ssp. japonica HOM05D003123 ORTHO05D003492 6.8e-15 84.3 85 51.8
HPP92_013254 Vanilla planifolia HOM05D003123 ORTHO05D003492 1.2e-14 83.6 96 49.0
C02p29330 Brassica napus HOM05D003123 ORTHO05D003492 3.4e-14 82.0 78 53.8
DCAR_007178 Daucus carota HOM05D003123 ORTHO05D003492 7.5e-14 80.9 51 70.6
DCAR_030989 Daucus carota HOM05D003123 ORTHO05D003492 2.2e-13 79.3 110 33.6
Peaxi162Scf00991g00337 Petunia axillaris HOM05D003123 ORTHO05D003492 2.8e-13 79.0 114 40.4
CDE04G2204 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 3.7e-13 78.6 84 47.6
Haze_09675 Corylus avellana HOM05D003123 ORTHO05D003492 3.7e-13 78.6 62 62.9
BraA02t06811Z Brassica rapa HOM05D003123 ORTHO05D003492 8.3e-13 77.4 126 39.7
Eucgr.A00584 Eucalyptus grandis HOM05D003123 ORTHO05D003492 1.1e-12 77.0 81 50.6
Cc11_g07170 Coffea canephora HOM05D003123 ORTHO05D003492 1.4e-12 76.6 50 68.0
TAR636G3586 Trochodendron aralioides HOM05D003123 ORTHO05D003492 2.4e-12 75.9 51 68.6
CDE02G4023 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 9.1e-12 73.9 76 50.0
Zm00001eb265630 Zea mays HOM05D003123 ORTHO05D003492 1.2e-11 73.6 81 46.9
Ah.15g091760 Amaranthus hybridus HOM05D003123 ORTHO05D003492 2.0e-11 72.8 59 59.3
Hund19062 Selenicereus undatus HOM05D003123 ORTHO05D003492 1.0e-10 70.5 56 58.9
BolC2t08984H Brassica oleracea HOM05D003123 ORTHO05D003492 1.3e-10 70.1 108 38.9
Eucgr.A00567 Eucalyptus grandis HOM05D003123 ORTHO05D003492 6.6e-10 67.8 45 66.7
PGSC0003DMG400007202 Solanum tuberosum HOM05D003123 ORTHO05D003492 6.6e-10 67.8 110 31.8
CAN.G959.24 Capsicum annuum HOM05D003123 ORTHO05D003492 8.6e-10 67.4 58 51.7
GSVIVG01025855001 Vitis vinifera HOM05D003123 ORTHO05D003492 1.5e-09 66.6 55 52.7
Phvul.008G270400 Phaseolus vulgaris HOM05D003123 ORTHO05D003492 1.9e-09 66.2 141 31.9
HPP92_013245 Vanilla planifolia HOM05D003123 ORTHO05D003492 1.9e-09 66.2 78 48.7
Eucgr.A00580 Eucalyptus grandis HOM05D003123 ORTHO05D003492 5.5e-09 64.7 79 44.3
Haze_13900 Corylus avellana HOM05D003123 ORTHO05D003492 9.5e-09 63.9 33 78.8
Solyc10g077110.1 Solanum lycopersicum HOM05D003123 ORTHO05D003492 9.5e-09 63.9 64 46.9
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 1.2e-08 63.5 63 49.2
CDE04G1776 Ceratophyllum demersum HOM05D003123 ORTHO05D003492 1.6e-08 63.2 70 47.1
Lsat_1_v5_gn_9_99300 Lactuca sativa HOM05D003123 ORTHO05D003492 1.6e-08 63.2 52 63.5
Lj1C1079T5 Lonicera japonica HOM05D003123 ORTHO05D003492 2.1e-08 62.8 43 72.1
RcHm_v2.0_Chr7g0228681 Rosa chinensis HOM05D003123 ORTHO05D003492 1.0e-07 60.5 106 39.6
ATR0733G234 Amborella trichopoda HOM05D003123 ORTHO05D003492 1.8e-07 59.7 61 54.1
ClCG01G026000 Citrullus lanatus HOM05D003123 ORTHO05D003492 4.0e-07 58.5 38 71.1
ClCG05G026900 Citrullus lanatus HOM05D003123 ORTHO05D003492 4.4e-06 55.1 39 64.1
Atru.chr13.2 Acer truncatum HOM05D003123 ORTHO05D003492 7.5e-06 54.3 44 61.4
CiPaw.03G019700 Carya illinoinensis HOM05D003123 ORTHO05D003492 9.8e-06 53.9 43 67.4
CsaV3_5G036840 Cucumis sativus L. HOM05D003123 ORTHO05D003492 9.8e-06 53.9 51 52.9
Prupe.4G066100 Prunus persica HOM05D003123 ORTHO05D003492 9.8e-06 53.9 43 58.1
Sed0001108 Sechium edule HOM05D003123 ORTHO05D003492 9.8e-06 53.9 44 63.6
Sed0001197 Sechium edule HOM05D003123 ORTHO05D003492 9.8e-06 53.9 36 66.7


User provided reference genes

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