Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15653 Striga asiatica HOM05D003579 ORTHO05D004266 1.2e-283 979.2 504 100.0
SGA_v2.0_scaffold74G24677 Striga asiatica HOM05D003579 ORTHO05D004266 4.9e-232 807.7 553 78.8
Migut.D01207 Erythranthe guttata HOM05D003579 ORTHO05D004266 7.8e-230 800.4 544 77.9
MSTRG.9359 Avicennia marina HOM05D003579 ORTHO05D004266 5.0e-229 797.7 553 76.1
SalBow1G2020 Salvia bowleyana HOM05D003579 ORTHO05D004266 7.3e-228 793.9 540 78.0
PGSC0003DMG400026957 Solanum tuberosum HOM05D003579 ORTHO05D004266 2.3e-221 772.3 553 73.4
CAN.G65.87 Capsicum annuum HOM05D003579 ORTHO05D004266 1.5e-220 769.6 553 73.2
Solyc06g072380.3 Solanum lycopersicum HOM05D003579 ORTHO05D004266 1.5e-220 769.6 553 73.2
Sopen06g028750 Solanum pennellii HOM05D003579 ORTHO05D004266 1.5e-220 769.6 553 73.2
Cc04_g09210 Coffea canephora HOM05D003579 ORTHO05D004266 6.2e-219 764.2 553 72.7
Nn3g19567 Nelumbo nucifera HOM05D003579 ORTHO05D004266 1.8e-218 762.7 553 72.7
Actinidia34663 Actinidia chinensis HOM05D003579 ORTHO05D004266 2.0e-217 759.2 553 73.1
RcHm_v2.0_Chr7g0177761 Rosa chinensis HOM05D003579 ORTHO05D004266 3.4e-217 758.4 553 72.2
MD06G1234200 Malus domestica HOM05D003579 ORTHO05D004266 9.8e-217 756.9 548 72.6
Thecc.03G066100 Theobroma cacao HOM05D003579 ORTHO05D004266 2.2e-216 755.7 553 71.8
FvH4_5g17820 Fragaria vesca HOM05D003579 ORTHO05D004266 2.9e-216 755.4 553 72.2
FAN04G1919 Fragaria x ananassa HOM05D003579 ORTHO05D004266 4.1e-215 751.5 553 72.2
COL.COLO4_24456 Corchorus olitorius HOM05D003579 ORTHO05D004266 7.1e-215 750.7 553 71.4
Prupe.5G238700 Prunus persica HOM05D003579 ORTHO05D004266 9.2e-215 750.4 549 71.8
MBI13_g21695_MAGBIO Magnolia biondii HOM05D003579 ORTHO05D004266 1.2e-214 750.0 580 68.4
Sp3g15890 Schrenkiella parvula HOM05D003579 ORTHO05D004266 1.2e-214 750.0 553 71.6
TWI60G0145 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 1.6e-214 749.6 553 71.1
Ciclev10019405m.g Citrus clementina HOM05D003579 ORTHO05D004266 4.6e-214 748.0 553 70.9
Glyma.09G170600 Glycine max HOM05D003579 ORTHO05D004266 7.8e-214 747.3 553 71.4
FAN08G1300 Fragaria x ananassa HOM05D003579 ORTHO05D004266 1.0e-213 746.9 553 72.0
CARHR093110 Cardamine hirsuta HOM05D003579 ORTHO05D004266 1.3e-213 746.5 549 71.4
Gorai.005G134000 Gossypium raimondii HOM05D003579 ORTHO05D004266 1.3e-213 746.5 553 71.4
CiPaw.16G098300 Carya illinoinensis HOM05D003579 ORTHO05D004266 5.1e-213 744.6 548 71.5
Thhalv10020350m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 8.6e-213 743.8 553 70.9
Lj5A164G66 Lonicera japonica HOM05D003579 ORTHO05D004266 8.6e-213 743.8 542 73.8
GSVIVG01012941001 Vitis vinifera HOM05D003579 ORTHO05D004266 8.6e-213 743.8 553 71.6
AL3G30930 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 1.1e-212 743.4 549 71.4
Gohir.A03G091600 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.1e-212 743.4 553 70.9
CiPaw.15G149000 Carya illinoinensis HOM05D003579 ORTHO05D004266 1.9e-212 742.7 548 71.5
Thhalv10011337m.g Eutrema salsugineum HOM05D003579 ORTHO05D004266 1.9e-212 742.7 550 70.5
Gohir.D02G120000 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.9e-212 742.7 553 71.2
CANSAT56G2203 Cannabis sativa HOM05D003579 ORTHO05D004266 2.5e-212 742.3 553 71.6
A05p32070 Brassica napus HOM05D003579 ORTHO05D004266 3.3e-212 741.9 553 70.7
Aa31LG8G4650 Aethionema arabicum HOM05D003579 ORTHO05D004266 7.3e-212 740.7 549 70.7
BcaC07g37135 Brassica carinata HOM05D003579 ORTHO05D004266 7.3e-212 740.7 553 70.3
FAN13G2047 Fragaria x ananassa HOM05D003579 ORTHO05D004266 7.3e-212 740.7 576 69.3
AT3G17770 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 9.5e-212 740.3 553 70.5
Glyma.07G107100 Glycine max HOM05D003579 ORTHO05D004266 1.2e-211 740.0 553 71.2
VMungo0464G0093 Vigna mungo HOM05D003579 ORTHO05D004266 1.2e-211 740.0 553 71.6
PSO478G0806 Papaver somniferum HOM05D003579 ORTHO05D004266 8.1e-211 737.3 553 70.3
A08p04710 Brassica napus HOM05D003579 ORTHO05D004266 1.8e-210 736.1 553 69.6
C05p48570 Brassica napus HOM05D003579 ORTHO05D004266 1.8e-210 736.1 553 70.3
Atru.chr9.1578_Atru.chr9.1579 Acer truncatum HOM05D003579 ORTHO05D004266 3.1e-210 735.3 553 70.9
Rhsim08G0128400 Rhododendron simsii HOM05D003579 ORTHO05D004266 3.1e-210 735.3 615 66.5
ECA233G2231 Erigeron canadensis HOM05D003579 ORTHO05D004266 4.0e-210 734.9 549 70.1
BraA08t32501Z Brassica rapa HOM05D003579 ORTHO05D004266 5.2e-210 734.6 553 69.6
Manes.06G001700 Manihot esculenta HOM05D003579 ORTHO05D004266 5.2e-210 734.6 553 70.3
BolC5t33593H Brassica oleracea HOM05D003579 ORTHO05D004266 6.8e-210 734.2 572 68.7
DCAR_011388 Daucus carota HOM05D003579 ORTHO05D004266 8.9e-210 733.8 540 71.3
Potri.012G041100 Populus trichocarpa HOM05D003579 ORTHO05D004266 8.9e-210 733.8 553 70.5
CANSAT56G3429 Cannabis sativa HOM05D003579 ORTHO05D004266 1.2e-209 733.4 552 71.2
Hma1.2p1_0471F.1_g159320 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.2e-209 733.4 552 71.2
Nn4g24545 Nelumbo nucifera HOM05D003579 ORTHO05D004266 1.2e-209 733.4 553 70.5
PGR044G2375 Punica granatum HOM05D003579 ORTHO05D004266 1.2e-209 733.4 553 71.1
BolC8t47313H Brassica oleracea HOM05D003579 ORTHO05D004266 1.5e-209 733.0 558 69.7
Phvul.004G146300 Phaseolus vulgaris HOM05D003579 ORTHO05D004266 1.5e-209 733.0 553 70.7
Sc10g0008960 Simmondsia chinensis HOM05D003579 ORTHO05D004266 2.0e-209 732.6 553 69.8
Carub.0001s3756 Capsella rubella HOM05D003579 ORTHO05D004266 2.6e-209 732.3 553 69.8
TWI15G0294 Tripterygium wilfordii HOM05D003579 ORTHO05D004266 2.6e-209 732.3 553 70.2
PSO017G1464 Papaver somniferum HOM05D003579 ORTHO05D004266 3.4e-209 731.9 553 70.0
Sabra12G0028200 Salix brachista HOM05D003579 ORTHO05D004266 3.4e-209 731.9 553 70.0
AT1G48430 Arabidopsis thaliana HOM05D003579 ORTHO05D004266 5.8e-209 731.1 552 69.9
HPP92_013151 Vanilla planifolia HOM05D003579 ORTHO05D004266 4.9e-208 728.0 551 69.1
arahy.Tifrunner.gnm1.ann1.N38075 Arachis hypogaea HOM05D003579 ORTHO05D004266 8.4e-208 727.2 545 70.3
Lalb_Chr24g0398301 Lupinus albus HOM05D003579 ORTHO05D004266 1.4e-207 726.5 553 70.0
CsaV3_1G004890 Cucumis sativus L. HOM05D003579 ORTHO05D004266 1.9e-207 726.1 554 69.5
HPP92_013127 Vanilla planifolia HOM05D003579 ORTHO05D004266 5.4e-207 724.5 551 69.0
Carub.0003s1749 Capsella rubella HOM05D003579 ORTHO05D004266 1.2e-206 723.4 549 69.4
Sed0003427 Sechium edule HOM05D003579 ORTHO05D004266 3.5e-206 721.8 553 69.6
AL1G55060 Arabidopsis lyrata HOM05D003579 ORTHO05D004266 7.8e-206 720.7 550 69.6
BraA05t22036Z Brassica rapa HOM05D003579 ORTHO05D004266 1.3e-205 719.9 567 67.9
HanXRQChr03g0087091 Helianthus annuus HOM05D003579 ORTHO05D004266 3.0e-205 718.8 555 69.0
EL10Ac8g19495 Beta vulgaris HOM05D003579 ORTHO05D004266 5.1e-205 718.0 553 70.0
Potri.015G032500 Populus trichocarpa HOM05D003579 ORTHO05D004266 8.6e-205 717.2 553 68.9
Aqoxy3G00001 Aquilegia oxysepala HOM05D003579 ORTHO05D004266 3.3e-204 715.3 553 68.2
FAN18G3127 Fragaria x ananassa HOM05D003579 ORTHO05D004266 7.3e-204 714.1 521 71.8
Gohir.A07G060800 Gossypium hirsutum HOM05D003579 ORTHO05D004266 1.6e-203 713.0 553 68.0
Os03g0719300 Oryza sativa ssp. japonica HOM05D003579 ORTHO05D004266 2.1e-203 712.6 546 67.9
Lsat_1_v5_gn_8_1741 Lactuca sativa HOM05D003579 ORTHO05D004266 2.4e-202 709.1 542 69.2
Dinv07799 Davidia involucrata HOM05D003579 ORTHO05D004266 3.1e-202 708.8 553 68.9
Eucgr.H00571 Eucalyptus grandis HOM05D003579 ORTHO05D004266 3.1e-202 708.8 553 68.2
arahy.Tifrunner.gnm1.ann1.7TIF1A Arachis hypogaea HOM05D003579 ORTHO05D004266 4.0e-202 708.4 578 66.4
PGR083G0897 Punica granatum HOM05D003579 ORTHO05D004266 5.2e-202 708.0 586 66.4
CARHR038050 Cardamine hirsuta HOM05D003579 ORTHO05D004266 6.8e-202 707.6 550 68.7
ATR0598G272 Amborella trichopoda HOM05D003579 ORTHO05D004266 8.9e-202 707.2 541 69.3
Nitab4.5_0003127g0010 Nicotiana tabacum HOM05D003579 ORTHO05D004266 2.2e-200 702.6 574 67.9
Sabra15G0026700 Salix brachista HOM05D003579 ORTHO05D004266 2.4e-199 699.1 559 67.1
Eucgr.K02291 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.3e-197 692.6 581 64.5
MELO3C001926.2 Cucumis melo HOM05D003579 ORTHO05D004266 6.6e-197 691.0 577 65.2
CDE06G0014 Ceratophyllum demersum HOM05D003579 ORTHO05D004266 3.3e-196 688.7 504 71.6
Duzib205G0446 Durio zibethinus HOM05D003579 ORTHO05D004266 1.3e-195 686.8 553 67.1
C08p05080 Brassica napus HOM05D003579 ORTHO05D004266 8.1e-195 684.1 553 66.5
Cpa.g.sc3.337 Carica papaya HOM05D003579 ORTHO05D004266 1.1e-194 683.7 477 74.0
Peaxi162Scf00643g00664 Petunia axillaris HOM05D003579 ORTHO05D004266 1.2e-193 680.2 555 67.7
Haze_18948 Corylus avellana HOM05D003579 ORTHO05D004266 3.4e-193 678.7 544 67.8
Duzib084G0133 Durio zibethinus HOM05D003579 ORTHO05D004266 1.3e-192 676.8 549 67.2
Nitab4.5_0000033g0340 Nicotiana tabacum HOM05D003579 ORTHO05D004266 1.7e-192 676.4 560 66.6
SMO230G0064 Selaginella moellendorffii HOM05D003579 ORTHO05D004266 2.9e-192 675.6 548 65.0
Gorai.001G069000 Gossypium raimondii HOM05D003579 ORTHO05D004266 3.8e-192 675.2 521 68.1
SabraUnG0005900 Salix brachista HOM05D003579 ORTHO05D004266 3.9e-189 665.2 586 62.5
Sp1g35380 Schrenkiella parvula HOM05D003579 ORTHO05D004266 9.6e-188 660.6 575 63.5
TPR.G31707 Trifolium pratense HOM05D003579 ORTHO05D004266 8.1e-187 657.5 558 64.7
AUR62034013 Chenopodium quinoa HOM05D003579 ORTHO05D004266 1.9e-183 646.4 675 56.0
Lj2g0001753 Lotus japonicus HOM05D003579 ORTHO05D004266 1.9e-183 646.4 552 63.8
Mapoly0125s0006 Marchantia polymorpha HOM05D003579 ORTHO05D004266 3.5e-182 642.1 545 62.6
Medtr6g073003 Medicago truncatula HOM05D003579 ORTHO05D004266 3.5e-182 642.1 558 63.3
Pp3c10_19150 Physcomitrium patens HOM05D003579 ORTHO05D004266 5.1e-181 638.3 549 61.7
unitig_736.g22827 Utricularia gibba HOM05D003579 ORTHO05D004266 5.1e-181 638.3 576 63.5
Ca_20292_v3 Cicer arietinum L. HOM05D003579 ORTHO05D004266 4.3e-180 635.2 557 63.0
BcaNung05880 Brassica carinata HOM05D003579 ORTHO05D004266 9.6e-180 634.0 570 62.8
AagrBONN_evm.TU.Sc2ySwM_228.5556 Anthoceros agrestis HOM05D003579 ORTHO05D004266 6.2e-179 631.3 548 62.6
Lj2g0026679 Lotus japonicus HOM05D003579 ORTHO05D004266 7.1e-175 617.8 552 61.6
CSS0000253 Camellia sinensis var. sinensis HOM05D003579 ORTHO05D004266 3.9e-173 612.1 464 71.1
Pp3c4_4070 Physcomitrium patens HOM05D003579 ORTHO05D004266 1.0e-165 587.4 531 60.1
MD14G1240900 Malus domestica HOM05D003579 ORTHO05D004266 1.9e-164 583.2 456 68.6
QL10p038058 Quercus lobata HOM05D003579 ORTHO05D004266 6.7e-149 531.6 368 75.8
Psat1g124800 Pisum sativum HOM05D003579 ORTHO05D004266 2.6e-148 529.6 477 61.2
AUR62038599 Chenopodium quinoa HOM05D003579 ORTHO05D004266 8.2e-147 524.6 440 65.9
CBR_g4012 Chara braunii HOM05D003579 ORTHO05D004266 1.6e-145 520.4 550 53.5
Cc04_g09220 Coffea canephora HOM05D003579 ORTHO05D004266 8.0e-142 508.1 364 73.6
Ah.14g085880 Amaranthus hybridus HOM05D003579 ORTHO05D004266 1.6e-129 467.2 388 66.5
Pp3c3_29160 Physcomitrium patens HOM05D003579 ORTHO05D004266 5.9e-129 465.3 507 53.1
Hund22318 Selenicereus undatus HOM05D003579 ORTHO05D004266 2.6e-124 449.9 272 83.8
C05p44830 Brassica napus HOM05D003579 ORTHO05D004266 9.5e-119 431.4 508 52.6
Lj5g0002346 Lotus japonicus HOM05D003579 ORTHO05D004266 1.1e-114 417.9 368 63.0
MCO02G001 Micromonas commoda HOM05D003579 ORTHO05D004266 2.4e-114 416.8 533 46.9
BraA05t21814Z Brassica rapa HOM05D003579 ORTHO05D004266 5.0e-112 409.1 274 78.8
Oeu023523.1 Olea europaea HOM05D003579 ORTHO05D004266 1.1e-109 401.4 220 91.8
BcaB04g17424 Brassica carinata HOM05D003579 ORTHO05D004266 9.2e-98 361.7 273 71.8
Lalb_Chr14g0370501 Lupinus albus HOM05D003579 ORTHO05D004266 2.9e-91 340.1 197 86.8
vmacro17765 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 7.8e-89 332.0 355 56.1
Cre13.g607450 Chlamydomonas reinhardtii HOM05D003579 ORTHO05D004266 9.6e-87 325.1 599 38.2
Oeu023525.2 Olea europaea HOM05D003579 ORTHO05D004266 1.8e-85 320.9 233 71.2
vmacro17766 Vaccinium macrocarpon HOM05D003579 ORTHO05D004266 2.7e-81 307.0 233 68.2
BraA05t21824Z Brassica rapa HOM05D003579 ORTHO05D004266 3.5e-81 306.6 211 77.7
PRCOL_00004885 Prasinoderma coloniale HOM05D003579 ORTHO05D004266 1.1e-77 295.0 561 37.3
Hma1.2p1_0385F.1_g141530 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.5e-76 291.2 168 84.5
Hma1.2p1_1785F.1_g302226 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 1.5e-76 291.2 168 84.5
SEGI_25290 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 3.8e-75 286.6 168 83.3
Hma1.2p1_0385F.1_g141540 Hydrangea macrophylla HOM05D003579 ORTHO05D004266 6.7e-72 275.8 155 86.5
TAR028G0001 Trochodendron aralioides HOM05D003579 ORTHO05D004266 3.7e-70 270.0 204 66.2
arahy.Tifrunner.gnm1.ann1.SGC6ES Arachis hypogaea HOM05D003579 ORTHO05D004266 3.1e-69 266.9 225 62.2
BolC5t33210H Brassica oleracea HOM05D003579 ORTHO05D004266 1.7e-67 261.2 166 82.5
BcaB04g17425 Brassica carinata HOM05D003579 ORTHO05D004266 1.1e-66 258.5 233 59.7
Hund22317 Selenicereus undatus HOM05D003579 ORTHO05D004266 1.5e-60 238.0 182 68.1
Gohir.D07G065501 Gossypium hirsutum HOM05D003579 ORTHO05D004266 9.3e-58 228.8 188 62.8
SEGI_32565 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 5.1e-56 223.0 184 60.9
ClCG04G012780 Citrullus lanatus HOM05D003579 ORTHO05D004266 9.0e-53 212.2 110 92.7
Cfa023793 Carpinus fangiana HOM05D003579 ORTHO05D004266 6.1e-49 199.5 568 31.7
Lsat_1_v5_gn_1_111321 Lactuca sativa HOM05D003579 ORTHO05D004266 6.1e-49 199.5 129 80.6
AUR62038598 Chenopodium quinoa HOM05D003579 ORTHO05D004266 7.9e-49 199.1 113 86.7
SEGI_07046 Sequoiadendron giganteum HOM05D003579 ORTHO05D004266 1.2e-44 185.3 203 51.7
QL10p037250 Quercus lobata HOM05D003579 ORTHO05D004266 2.0e-44 184.5 99 89.9
Psat0s1042g0080 Pisum sativum HOM05D003579 ORTHO05D004266 4.4e-39 166.8 233 45.1
QL10p037085 Quercus lobata HOM05D003579 ORTHO05D004266 3.8e-35 153.7 122 67.2
ClCG04G012770 Citrullus lanatus HOM05D003579 ORTHO05D004266 1.6e-33 148.3 89 85.4
ClCG04G012750 Citrullus lanatus HOM05D003579 ORTHO05D004266 3.7e-30 137.1 110 62.7
Glyma.15G201250 Glycine max HOM05D003579 ORTHO05D004266 1.1e-29 135.6 144 52.8
BraA05t21815Z Brassica rapa HOM05D003579 ORTHO05D004266 2.6e-28 131.0 233 38.6
BraA05t21823Z Brassica rapa HOM05D003579 ORTHO05D004266 6.5e-27 126.3 123 56.9
BolC5t33211H Brassica oleracea HOM05D003579 ORTHO05D004266 1.1e-26 125.6 123 57.7
Lalb_Chr14g0370481 Lupinus albus HOM05D003579 ORTHO05D004266 1.9e-26 124.8 125 59.2
Lsat_1_v5_gn_7_12281 Lactuca sativa HOM05D003579 ORTHO05D004266 9.4e-26 122.5 93 69.9
Lalb_Chr14g0370511 Lupinus albus HOM05D003579 ORTHO05D004266 1.4e-24 118.6 70 80.0
Oeu016195.1 Olea europaea HOM05D003579 ORTHO05D004266 5.2e-24 116.7 105 63.8
arahy.Tifrunner.gnm1.ann1.IG3GCS Arachis hypogaea HOM05D000921 ORTHO05D002852 3.7e-22 110.5 90 57.8
Eucgr.E02122 Eucalyptus grandis HOM05D003579 ORTHO05D004266 2.0e-20 104.8 59 83.1
VMungo1383G3479 Vigna mungo HOM05D003579 ORTHO05D004266 1.5e-18 98.6 107 51.4
SGA_v2.0_scaffold67G22627 Striga asiatica HOM05D003579 ORTHO05D004266 1.6e-17 95.1 102 53.9
Potri.011G011650 Populus trichocarpa HOM05D003579 ORTHO05D004266 1.4e-16 92.0 50 86.0
ClCG04G012790 Citrullus lanatus HOM05D003579 ORTHO05D004266 2.0e-15 88.2 46 91.3
arahy.Tifrunner.gnm1.ann1.U86FK3 Arachis hypogaea HOM05D003579 ORTHO05D009264 9.8e-15 85.9 87 59.8
Psat7g138600 Pisum sativum HOM05D003579 ORTHO05D016333 1.3e-14 85.5 91 53.8
Oeu016194.1 Olea europaea HOM05D002938 ORTHO05D002074 1.2e-09 68.9 55 60.0
Eucgr.J00713 Eucalyptus grandis HOM05D000222 ORTHO05D000329 4.0e-08 63.9 30 96.7
Lalb_Chr14g0370491 Lupinus albus HOM05D003579 ORTHO05D004266 2.8e-06 57.8 49 57.1
Sopen09g023790 Solanum pennellii HOM05D003579 ORTHO05D004266 2.8e-06 57.8 76 48.7
Sopen11g021990 Solanum pennellii HOM05D003579 ORTHO05D004266 2.8e-06 57.8 76 48.7
Lsat_1_v5_gn_3_63580 Lactuca sativa HOM05D003579 ORTHO05D004266 4.9e-06 57.0 36 66.7


User provided reference genes

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