Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15614 Striga asiatica HOM05D004471 ORTHO05D005345 3.3e-124 448.4 222 100.0
SGA_v2.0_scaffold143G35756 Striga asiatica HOM05D004471 ORTHO05D005345 6.9e-90 334.3 168 96.4
Migut.I00591 Erythranthe guttata HOM05D004471 ORTHO05D005345 1.4e-87 326.6 168 93.5
MSTRG.11237 Avicennia marina HOM05D004471 ORTHO05D005345 3.7e-83 312.0 168 88.7
SalBow3G0010 Salvia bowleyana HOM05D004471 ORTHO05D005345 3.1e-82 308.9 166 89.2
Nitab4.5_0002323g0100 Nicotiana tabacum HOM05D004471 ORTHO05D005345 4.1e-82 308.5 168 88.1
Nitab4.5_0007843g0010 Nicotiana tabacum HOM05D004471 ORTHO05D005345 4.1e-82 308.5 168 88.1
Solyc04g072410.3 Solanum lycopersicum HOM05D004471 ORTHO05D005345 2.6e-81 305.8 168 87.5
Sopen04g028580 Solanum pennellii HOM05D004471 ORTHO05D005345 2.6e-81 305.8 168 87.5
PGSC0003DMG400027544 Solanum tuberosum HOM05D004471 ORTHO05D005345 2.6e-81 305.8 168 87.5
CAN.G617.9 Capsicum annuum HOM05D004471 ORTHO05D005345 3.5e-81 305.4 168 87.5
Oeu053263.1 Olea europaea HOM05D004471 ORTHO05D005345 7.7e-81 304.3 169 87.0
Cc02_g32300 Coffea canephora HOM05D004471 ORTHO05D005345 1.0e-80 303.9 168 86.9
Dinv26586 Davidia involucrata HOM05D004471 ORTHO05D005345 1.1e-79 300.4 168 84.5
Rhsim05G0148100 Rhododendron simsii HOM05D004471 ORTHO05D005345 2.5e-79 299.3 184 77.7
Peaxi162Scf00071g00744 Petunia axillaris HOM05D004471 ORTHO05D005345 3.2e-79 298.9 168 85.7
CSS0025209 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 2.1e-78 296.2 168 83.3
Oeu041531.1 Olea europaea HOM05D004471 ORTHO05D005345 6.1e-78 294.7 173 82.1
Actinidia05746 Actinidia chinensis HOM05D004471 ORTHO05D005345 5.2e-77 291.6 168 82.7
Lsat_1_v5_gn_5_112921 Lactuca sativa HOM05D004471 ORTHO05D005345 6.7e-77 291.2 168 82.1
vmacro19660 Vaccinium macrocarpon HOM05D004471 ORTHO05D005345 6.7e-77 291.2 166 83.7
Lj9A676G54 Lonicera japonica HOM05D004471 ORTHO05D005345 2.6e-76 289.3 164 85.4
EL10Ac4g09248 Beta vulgaris HOM05D004471 ORTHO05D005345 1.8e-74 283.1 168 81.0
TWI56G0886 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 1.8e-74 283.1 168 79.2
TWI12G0951 Tripterygium wilfordii HOM05D004471 ORTHO05D005345 4.1e-74 282.0 168 78.6
unitig_744.g24459 Utricularia gibba HOM05D004471 ORTHO05D005345 5.3e-74 281.6 168 78.0
GSVIVG01021973001 Vitis vinifera HOM05D004471 ORTHO05D005345 9.1e-74 280.8 168 81.0
PSO170G4164 Papaver somniferum HOM05D004471 ORTHO05D005345 1.6e-73 280.0 171 78.9
VMungo0540G0886 Vigna mungo HOM05D004471 ORTHO05D005345 2.0e-73 279.6 169 79.9
Haze_04280 Corylus avellana HOM05D004471 ORTHO05D005345 4.5e-73 278.5 167 82.6
MELO3C015368.2 Cucumis melo HOM05D004471 ORTHO05D005345 7.7e-73 277.7 168 81.0
Atru.chr2.617 Acer truncatum HOM05D004471 ORTHO05D005345 1.0e-72 277.3 166 78.9
Glyma.03G242500 Glycine max HOM05D004471 ORTHO05D005345 2.2e-72 276.2 169 78.1
PSO063G3713 Papaver somniferum HOM05D004471 ORTHO05D005345 2.2e-72 276.2 171 77.8
ClCG03G016550 Citrullus lanatus HOM05D004471 ORTHO05D005345 2.9e-72 275.8 168 79.8
CSS0028112 Camellia sinensis var. sinensis HOM05D004471 ORTHO05D005345 3.8e-72 275.4 216 66.2
Phvul.006G096500 Phaseolus vulgaris HOM05D004471 ORTHO05D005345 5.0e-72 275.0 169 79.9
Manes.09G160500 Manihot esculenta HOM05D004471 ORTHO05D005345 6.5e-72 274.6 168 77.4
Glyma.19G240000 Glycine max HOM05D004471 ORTHO05D005345 8.5e-72 274.2 169 78.1
Sc09g0003490 Simmondsia chinensis HOM05D004471 ORTHO05D005345 1.1e-71 273.9 169 78.1
CiPaw.07G011400 Carya illinoinensis HOM05D004471 ORTHO05D005345 1.5e-71 273.5 169 79.3
QL03p002667 Quercus lobata HOM05D004471 ORTHO05D005345 2.5e-71 272.7 168 79.2
Sed0002921 Sechium edule HOM05D004471 ORTHO05D005345 4.2e-71 271.9 168 78.6
Ah.04g160020 Amaranthus hybridus HOM05D003164 ORTHO05D003575 1.6e-70 270.0 168 77.4
CsaV3_1G039430 Cucumis sativus L. HOM05D004471 ORTHO05D005345 1.6e-70 270.0 173 78.0
Lj2g0025202 Lotus japonicus HOM05D004471 ORTHO05D005345 2.1e-70 269.6 169 76.3
Hund21668 Selenicereus undatus HOM05D004471 ORTHO05D005345 2.1e-70 269.6 168 76.8
Ah.06g192940 Amaranthus hybridus HOM05D004471 ORTHO05D005345 2.7e-70 269.2 166 76.5
AUR62000928 Chenopodium quinoa HOM05D004471 ORTHO05D005345 2.7e-70 269.2 167 78.4
Lalb_Chr18g0045321 Lupinus albus HOM05D004471 ORTHO05D005345 2.7e-70 269.2 170 75.9
Ciclev10002639m.g Citrus clementina HOM05D004471 ORTHO05D005345 3.6e-70 268.9 170 78.2
Thecc.05G251800 Theobroma cacao HOM05D004471 ORTHO05D005345 4.7e-70 268.5 168 77.4
TAR629G0585 Trochodendron aralioides HOM05D004471 ORTHO05D005345 6.1e-70 268.1 169 75.7
Medtr7g114210 Medicago truncatula HOM05D004471 ORTHO05D005345 8.0e-70 267.7 169 77.5
PGR031G3800 Punica granatum HOM05D004471 ORTHO05D005345 8.0e-70 267.7 168 77.4
Duzib177G1077 Durio zibethinus HOM05D004471 ORTHO05D005345 1.8e-69 266.5 168 76.2
Gorai.007G263500 Gossypium raimondii HOM05D004471 ORTHO05D005345 2.3e-69 266.2 168 76.2
HanXRQChr03g0072361 Helianthus annuus HOM05D004471 ORTHO05D005345 2.3e-69 266.2 168 76.2
Hund07017 Selenicereus undatus HOM05D004471 ORTHO05D005345 3.0e-69 265.8 168 76.8
HanXRQChr14g0442561 Helianthus annuus HOM05D004471 ORTHO05D005345 4.0e-69 265.4 168 75.6
TPR.G6943 Trifolium pratense HOM05D004471 ORTHO05D005345 4.0e-69 265.4 169 76.9
CARHR079310 Cardamine hirsuta HOM05D004471 ORTHO05D005345 5.2e-69 265.0 168 74.4
Ca_09388_v3 Cicer arietinum L. HOM05D004471 ORTHO05D005345 5.2e-69 265.0 169 76.9
AUR62005042 Chenopodium quinoa HOM05D004471 ORTHO05D005345 6.8e-69 264.6 167 77.2
Gohir.A11G236600 Gossypium hirsutum HOM05D004471 ORTHO05D005345 6.8e-69 264.6 168 75.6
Gohir.D11G247200 Gossypium hirsutum HOM05D004471 ORTHO05D005345 6.8e-69 264.6 168 75.6
Nn1g09147 Nelumbo nucifera HOM05D004471 ORTHO05D005345 1.5e-68 263.5 168 75.0
Aqoxy5G00550 Aquilegia oxysepala HOM05D004471 ORTHO05D005345 4.4e-68 261.9 167 74.3
arahy.Tifrunner.gnm1.ann1.9WIB0A Arachis hypogaea HOM05D004471 ORTHO05D005345 5.7e-68 261.5 167 74.9
Potri.013G031000 Populus trichocarpa HOM05D004471 ORTHO05D005345 9.8e-68 260.8 168 75.6
Duzib106G0566 Durio zibethinus HOM05D004471 ORTHO05D005345 1.7e-67 260.0 168 75.0
Sabra13G0030200 Salix brachista HOM05D004471 ORTHO05D005345 2.8e-67 259.2 168 75.0
BraA05t22994Z Brassica rapa HOM05D004471 ORTHO05D005345 3.7e-67 258.8 165 73.9
Cfa006506 Carpinus fangiana HOM05D004471 ORTHO05D005345 4.8e-67 258.5 153 83.0
THA.LOC104818664 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 4.8e-67 258.5 169 75.1
C05p62270 Brassica napus HOM05D004471 ORTHO05D005345 6.3e-67 258.1 190 65.8
Thhalv10021604m.g Eutrema salsugineum HOM05D004471 ORTHO05D005345 6.3e-67 258.1 168 72.6
A05p42590 Brassica napus HOM05D004471 ORTHO05D005345 8.3e-67 257.7 172 70.9
AT3G05000 Arabidopsis thaliana HOM05D004471 ORTHO05D005345 1.1e-66 257.3 168 72.6
BcaC07g40233 Brassica carinata HOM05D004471 ORTHO05D005345 1.1e-66 257.3 165 73.3
BolC5t34882H Brassica oleracea HOM05D004471 ORTHO05D005345 1.1e-66 257.3 165 73.3
Eucgr.B01762 Eucalyptus grandis HOM05D004471 ORTHO05D005345 1.1e-66 257.3 168 73.2
THA.LOC104821699 Tarenaya hassleriana HOM05D004471 ORTHO05D005345 1.4e-66 256.9 168 72.6
DCAR_003298 Daucus carota HOM05D004471 ORTHO05D005345 1.8e-66 256.5 175 73.1
FAN02G0766 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.8e-66 256.5 176 70.5
HanXRQChr10g0301731 Helianthus annuus HOM05D004471 ORTHO05D005345 1.8e-66 256.5 168 74.4
AL3G15090 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 2.4e-66 256.1 168 72.0
FAN05G4093 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.4e-66 256.1 176 70.5
Gohir.D13G104100 Gossypium hirsutum HOM05D004471 ORTHO05D005345 2.4e-66 256.1 168 74.4
Carub.0003s0423 Capsella rubella HOM05D004471 ORTHO05D005345 3.1e-66 255.8 168 72.0
FvH4_6g04260 Fragaria vesca HOM05D004471 ORTHO05D005345 3.1e-66 255.8 176 70.5
FAN09G1403 Fragaria x ananassa HOM05D004471 ORTHO05D005345 4.1e-66 255.4 176 69.9
Lalb_Chr06g0167871 Lupinus albus HOM05D004471 ORTHO05D005345 4.1e-66 255.4 169 72.2
Os09g0244900 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 5.4e-66 255.0 168 72.0
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 9.1e-66 254.2 167 72.5
Gohir.A13G100500 Gossypium hirsutum HOM05D004471 ORTHO05D005345 9.1e-66 254.2 168 73.2
Manes.08G125300 Manihot esculenta HOM05D004471 ORTHO05D005345 1.6e-65 253.4 168 73.8
Sp3g03820 Schrenkiella parvula HOM05D004471 ORTHO05D005345 1.6e-65 253.4 168 70.8
FAN09G1313 Fragaria x ananassa HOM05D004471 ORTHO05D005345 2.0e-65 253.1 167 71.9
Lalb_Chr02g0148511 Lupinus albus HOM05D004471 ORTHO05D005345 3.5e-65 252.3 169 71.6
Aa31LG5G15450 Aethionema arabicum HOM05D004471 ORTHO05D005345 4.5e-65 251.9 165 71.5
MD12G1229300 Malus domestica HOM05D004471 ORTHO05D005345 4.5e-65 251.9 176 69.9
Os07g0291100 Oryza sativa ssp. japonica HOM05D004471 ORTHO05D005345 4.5e-65 251.9 168 70.8
SEGI_33381 Sequoiadendron giganteum HOM05D004471 ORTHO05D005345 4.5e-65 251.9 170 72.4
FAN14G3038 Fragaria x ananassa HOM05D004471 ORTHO05D005345 5.9e-65 251.5 167 71.9
Zm00001eb421350 Zea mays HOM05D004471 ORTHO05D005345 7.7e-65 251.1 164 72.0
MD00G1052700 Malus domestica HOM05D004471 ORTHO05D005345 1.0e-64 250.8 176 69.3
CANSAT54G1584 Cannabis sativa HOM05D004471 ORTHO05D005345 1.7e-64 250.0 168 72.6
Cfa006508 Carpinus fangiana HOM05D004471 ORTHO05D005345 1.7e-64 250.0 151 82.1
Prupe.6G334800 Prunus persica HOM05D004471 ORTHO05D005345 5.0e-64 248.4 167 71.3
Nn5g28667 Nelumbo nucifera HOM05D004471 ORTHO05D005345 8.5e-64 247.7 167 72.5
Zm00001eb084990 Zea mays HOM05D004471 ORTHO05D005345 8.5e-64 247.7 164 70.7
Potri.005G044300 Populus trichocarpa HOM05D004471 ORTHO05D005345 5.5e-63 245.0 168 71.4
COL.COLO4_36062 Corchorus olitorius HOM05D004471 ORTHO05D005345 9.5e-63 244.2 220 58.6
ATR0724G032 Amborella trichopoda HOM05D004471 ORTHO05D005345 1.2e-62 243.8 166 71.1
CDE06G1925 Ceratophyllum demersum HOM05D004471 ORTHO05D005345 2.7e-62 242.7 170 66.5
ECA240G0709 Erigeron canadensis HOM05D005412 ORTHO05D006096 8.0e-62 241.1 159 74.2
RcHm_v2.0_Chr3g0452951 Rosa chinensis HOM05D004471 ORTHO05D005345 2.3e-61 239.6 177 66.7
BcaC05g29980 Brassica carinata HOM05D004471 ORTHO05D005345 3.0e-61 239.2 156 71.8
BcaC05g29981 Brassica carinata HOM05D004471 ORTHO05D005345 3.0e-61 239.2 156 71.8
arahy.Tifrunner.gnm1.ann1.M2LFCZ Arachis hypogaea HOM05D004471 ORTHO05D005345 5.2e-61 238.4 166 69.3
arahy.Tifrunner.gnm1.ann1.MZ802S Arachis hypogaea HOM05D004471 ORTHO05D005345 5.2e-61 238.4 166 69.3
MBI07_g44660_MAGBIO Magnolia biondii HOM05D004471 ORTHO05D005345 8.8e-61 237.7 156 71.8
arahy.Tifrunner.gnm1.ann1.HP6SUR Arachis hypogaea HOM05D004471 ORTHO05D005345 1.2e-60 237.3 166 68.7
Sabra05G0041100 Salix brachista HOM05D004471 ORTHO05D005345 1.5e-60 236.9 166 69.9
arahy.Tifrunner.gnm1.ann1.NV1QRL Arachis hypogaea HOM05D004471 ORTHO05D005345 4.4e-60 235.3 166 68.7
Mapoly0002s0104 Marchantia polymorpha HOM05D004471 ORTHO05D005345 4.9e-59 231.9 169 64.5
MD12G1230100 Malus domestica HOM05D004471 ORTHO05D005345 6.3e-59 231.5 160 70.0
HPP92_003010 Vanilla planifolia HOM05D004471 ORTHO05D005345 6.3e-59 231.5 168 65.5
HPP92_027546 Vanilla planifolia HOM05D004471 ORTHO05D005345 1.1e-58 230.7 166 65.7
SMO347G0444 Selaginella moellendorffii HOM05D004471 ORTHO05D005345 4.1e-58 228.8 166 66.3
SHI18238 Sapria himalayana HOM05D004471 ORTHO05D005345 9.2e-58 227.6 168 63.7
Pp3c4_10030 Physcomitrium patens HOM05D004471 ORTHO05D005345 7.7e-57 224.6 165 64.8
Cc00_g16770 Coffea canephora HOM05D004471 ORTHO05D005345 8.0e-54 214.5 115 87.0
Cc00_g29480 Coffea canephora HOM05D004471 ORTHO05D005345 8.0e-54 214.5 115 87.0
DCAR_022266 Daucus carota HOM05D004471 ORTHO05D005345 5.7e-52 208.4 166 62.0
DCAR_030062 Daucus carota HOM05D004471 ORTHO05D005345 9.8e-52 207.6 166 60.8
Lsat_1_v5_gn_9_110141 Lactuca sativa HOM05D004471 ORTHO05D005345 1.6e-49 200.3 138 69.6
Cpa.g.sc117.10 Carica papaya HOM05D004471 ORTHO05D005345 4.6e-49 198.7 113 82.3
Psat3g008960 Pisum sativum HOM05D004471 ORTHO05D005345 3.6e-46 189.1 116 78.4
Gorai.013G116700 Gossypium raimondii HOM05D004471 ORTHO05D005345 6.8e-45 184.9 116 76.7
AL3G15360 Arabidopsis lyrata HOM05D004471 ORTHO05D005345 1.2e-44 184.1 115 73.0
Eucgr.L02626 Eucalyptus grandis HOM05D004471 ORTHO05D005345 9.8e-44 181.0 115 73.9
CBR_g38080 Chara braunii HOM05D004471 ORTHO05D005345 1.1e-42 177.6 183 48.1
CSS0014300 Camellia sinensis var. sinensis HOM05D002365 ORTHO05D005345 1.5e-36 157.1 84 85.7
Aa31LG1G24890 Aethionema arabicum HOM05D004471 ORTHO05D005345 1.3e-35 154.1 98 70.4
Aa31LG1G21870 Aethionema arabicum HOM05D004471 ORTHO05D005345 2.9e-35 152.9 105 67.6
Aa31LG1G26450 Aethionema arabicum HOM05D004471 ORTHO05D005345 6.4e-35 151.8 102 69.6
Cre16.g663650 Chlamydomonas reinhardtii HOM05D004471 ORTHO05D005345 6.4e-35 151.8 164 50.0
QL03p002083 Quercus lobata HOM05D004471 ORTHO05D005345 2.5e-31 139.8 95 72.6
RcHm_v2.0_Chr5g0055691 Rosa chinensis HOM05D004471 ORTHO05D005345 1.1e-23 114.4 112 54.5
arahy.Tifrunner.gnm1.ann1.BCR285 Arachis hypogaea HOM05D004471 ORTHO05D005345 9.6e-23 111.3 60 78.3
MCO16G564 Micromonas commoda HOM05D004471 ORTHO05D005345 1.2e-22 110.9 173 36.4
Pp3c13_13330 Physcomitrium patens HOM05D004471 ORTHO05D005345 3.1e-21 106.3 116 45.7
Aa31LG1G25270 Aethionema arabicum HOM05D004471 ORTHO05D005345 7.6e-20 101.7 117 47.9
Cfa024495 Carpinus fangiana HOM05D004471 ORTHO05D005345 2.9e-19 99.8 128 43.8
PRCOL_00002528 Prasinoderma coloniale HOM05D004471 ORTHO05D005345 4.9e-19 99.0 167 37.1
Dinv27603 Davidia involucrata HOM05D004471 ORTHO05D005345 3.6e-14 82.8 54 74.1
CBR_g12958 Chara braunii HOM05D000019 ORTHO05D000002 4.8e-14 82.4 89 49.4
FAN05G5407 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.6e-12 76.6 48 72.9
Dinv27604 Davidia involucrata HOM05D004471 ORTHO05D005345 3.4e-12 76.3 52 73.1
FAN02G2374 Fragaria x ananassa HOM05D012224 ORTHO05D017959 2.9e-11 73.2 50 70.0
QL03p002537 Quercus lobata HOM05D004471 ORTHO05D005345 2.1e-09 67.0 62 59.7
QL03p001871 Quercus lobata HOM05D004471 ORTHO05D337354 6.2e-06 55.5 37 73.0


User provided reference genes

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