Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 8.9e-56 219.9 103 100.0
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 4.7e-49 197.6 100 92.0
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 3.2e-45 184.9 98 85.7
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 3.0e-43 178.3 91 89.0
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 1.1e-42 176.4 91 87.9
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 5.6e-42 174.1 90 85.6
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 9.5e-42 173.3 91 84.6
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 1.2e-41 172.9 92 85.9
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 1.6e-41 172.6 91 84.6
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 2.1e-41 172.2 93 86.0
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 2.8e-41 171.8 90 84.4
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 3.6e-41 171.4 90 84.4
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 3.6e-41 171.4 105 77.1
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 4.7e-41 171.0 90 84.4
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 4.7e-41 171.0 90 84.4
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 6.2e-41 170.6 91 85.7
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 6.2e-41 170.6 91 85.7
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 8.0e-41 170.2 91 85.7
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 8.0e-41 170.2 91 85.7
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 1.1e-40 169.9 90 83.3
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 1.4e-40 169.5 91 82.4
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 1.4e-40 169.5 91 85.7
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 1.8e-40 169.1 91 85.7
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 2.3e-40 168.7 92 82.6
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 3.1e-40 168.3 91 83.5
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 4.0e-40 167.9 91 82.4
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 4.0e-40 167.9 91 82.4
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 4.0e-40 167.9 91 85.7
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 4.0e-40 167.9 91 83.5
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 5.2e-40 167.5 90 82.2
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 6.8e-40 167.2 89 83.1
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 6.8e-40 167.2 92 83.7
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 6.8e-40 167.2 90 84.4
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 8.9e-40 166.8 88 85.2
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 8.9e-40 166.8 91 82.4
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 1.2e-39 166.4 91 83.5
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 1.5e-39 166.0 91 82.4
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 2.0e-39 165.6 91 81.3
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 3.4e-39 164.9 91 81.3
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 3.4e-39 164.9 91 86.8
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 4.4e-39 164.5 91 81.3
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 4.4e-39 164.5 91 81.3
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 5.8e-39 164.1 91 83.5
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 9.8e-39 163.3 88 85.2
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 9.8e-39 163.3 91 84.6
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 1.3e-38 162.9 91 81.3
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 1.3e-38 162.9 87 82.8
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 1.7e-38 162.5 91 80.2
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 4.9e-38 161.0 88 84.1
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 4.9e-38 161.0 89 82.0
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 6.4e-38 160.6 94 80.9
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 6.4e-38 160.6 91 79.1
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 8.3e-38 160.2 91 79.1
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 1.1e-37 159.8 77 92.2
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 1.1e-37 159.8 94 80.9
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 1.1e-37 159.8 91 79.1
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 1.1e-37 159.8 91 80.2
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 1.4e-37 159.5 91 80.2
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 1.4e-37 159.5 91 79.1
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 2.4e-37 158.7 91 79.1
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 5.4e-37 157.5 91 79.1
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 1.2e-36 156.4 81 84.0
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 1.6e-36 156.0 86 80.2
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 2.1e-36 155.6 91 76.9
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 3.5e-36 154.8 91 75.8
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 6.0e-36 154.1 88 78.4
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 6.0e-36 154.1 87 79.3
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 1.3e-35 152.9 89 75.3
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 1.3e-35 152.9 89 75.3
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 1.3e-35 152.9 89 75.3
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 1.3e-35 152.9 89 75.3
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 1.7e-35 152.5 88 75.0
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 2.3e-35 152.1 89 74.2
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 3.0e-35 151.8 88 76.1
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 3.0e-35 151.8 89 74.2
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 3.0e-35 151.8 89 74.2
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 3.9e-35 151.4 80 83.8
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.9e-35 151.4 93 78.5
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.9e-35 151.4 93 78.5
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 3.9e-35 151.4 93 78.5
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 3.9e-35 151.4 88 77.3
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 3.9e-35 151.4 93 78.5
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 5.1e-35 151.0 89 74.2
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 5.1e-35 151.0 91 71.4
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 1.5e-34 149.4 89 71.9
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 1.5e-34 149.4 89 71.9
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 1.5e-34 149.4 89 71.9
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 1.5e-34 149.4 92 77.2
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 1.5e-34 149.4 96 70.8
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 1.9e-34 149.1 89 71.9
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 1.9e-34 149.1 89 71.9
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 1.9e-34 149.1 93 77.4
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 1.9e-34 149.1 96 72.9
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 2.5e-34 148.7 89 71.9
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 3.3e-34 148.3 74 91.9
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 7.3e-34 147.1 89 71.9
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 1.6e-33 146.0 89 71.9
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 2.1e-33 145.6 90 76.7
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 1.5e-31 139.4 85 71.8
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 2.0e-31 139.0 87 70.1
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 7.5e-31 137.1 87 71.3
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 1.2e-28 129.8 91 68.1
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 2.3e-27 125.6 88 63.6
Oeu005023.1 Olea europaea HOM05D006449 ORTHO05D007995 5.1e-27 124.4 67 80.6
Migut.J00654 Erythranthe guttata HOM05D006449 ORTHO05D007995 6.8e-24 114.0 61 78.7
Nitab4.5_0029554g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 3.4e-23 111.7 62 77.4
vmacro07293 Vaccinium macrocarpon HOM05D006449 ORTHO05D007995 4.4e-23 111.3 71 71.8
Ciclev10013228m.g Citrus clementina HOM05D006449 ORTHO05D007995 3.8e-22 108.2 57 82.5
Sc20g0005520 Simmondsia chinensis HOM05D006449 ORTHO05D007995 8.4e-22 107.1 57 80.7
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 1.9e-21 105.9 88 56.8
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 1.9e-21 105.9 88 56.8
Haze_20546 Corylus avellana HOM05D006449 ORTHO05D007995 9.2e-21 103.6 61 73.8
Manes.08G011000 Manihot esculenta HOM05D006449 ORTHO05D007995 1.2e-20 103.2 75 70.7
arahy.Tifrunner.gnm1.ann1.9GBJ25 Arachis hypogaea HOM05D006449 ORTHO05D007995 4.6e-20 101.3 57 77.2
arahy.Tifrunner.gnm1.ann1.D9FX9P Arachis hypogaea HOM05D006449 ORTHO05D007995 4.6e-20 101.3 57 77.2
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 1.3e-19 99.8 54 81.5
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 8.4e-14 80.5 85 43.5
CBR_g8310 Chara braunii HOM05D006449 ORTHO05D007995 1.9e-13 79.3 51 64.7
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 1.9e-13 79.3 89 41.6
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 4.6e-12 74.7 70 50.0
HanXRQChr16g0526221 Helianthus annuus HOM05D006449 ORTHO05D007995 9.6e-10 67.0 30 93.3
MSTRG.19181 Avicennia marina HOM05D006449 ORTHO05D007995 8.1e-09 63.9 33 84.8
Lj3A986G82 Lonicera japonica HOM05D006449 ORTHO05D007995 1.1e-08 63.5 34 82.4
Prupe.7G129700 Prunus persica HOM05D006449 ORTHO05D007995 4.0e-08 61.6 36 66.7
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.2e-07 60.1 31 80.6


User provided reference genes

Program Settings