Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15474 Striga asiatica HOM05D005036 ORTHO05D005881 2.7e-80 302.4 206 100.0
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 3.7e-53 212.2 206 78.6
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 2.7e-48 196.1 210 73.8
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 2.6e-46 189.5 203 69.0
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 9.7e-46 187.6 199 74.4
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 6.3e-45 184.9 208 61.1
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 2.2e-42 176.4 208 69.7
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 1.5e-41 173.7 204 70.1
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 1.2e-38 164.1 204 68.6
Actinidia32478 Actinidia chinensis HOM05D005036 ORTHO05D005881 7.5e-38 161.4 204 66.7
Cpa.g.sc92.91 Carica papaya HOM05D005036 ORTHO05D005881 4.8e-37 158.7 205 67.3
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 8.3e-37 157.9 206 65.0
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 3.1e-36 156.0 206 66.5
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 4.1e-36 155.6 210 62.9
Sed0017772 Sechium edule HOM05D005036 ORTHO05D005881 4.1e-36 155.6 206 67.5
Atru.chr8.1751 Acer truncatum HOM05D005036 ORTHO05D005881 7.0e-36 154.8 206 68.0
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 9.1e-36 154.5 210 62.9
CiPaw.10G127400 Carya illinoinensis HOM05D005036 ORTHO05D005881 1.2e-35 154.1 210 66.7
Haze_20497 Corylus avellana HOM05D005036 ORTHO05D005881 2.0e-35 153.3 206 61.2
Nn2g13858 Nelumbo nucifera HOM05D005036 ORTHO05D005881 3.5e-35 152.5 204 66.7
Nitab4.5_0003314g0090 Nicotiana tabacum HOM05D005036 ORTHO05D005881 3.5e-35 152.5 209 64.6
Nitab4.5_0002373g0080 Nicotiana tabacum HOM05D005036 ORTHO05D005881 5.9e-35 151.8 209 64.6
THA.LOC104823230 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 5.9e-35 151.8 205 67.8
GSVIVG01033679001 Vitis vinifera HOM05D005036 ORTHO05D005881 5.9e-35 151.8 209 67.9
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 7.7e-35 151.4 206 66.0
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 1.0e-34 151.0 206 66.5
Cfa017655 Carpinus fangiana HOM05D005036 ORTHO05D005881 1.0e-34 151.0 206 61.7
Ciclev10012800m.g Citrus clementina HOM05D005036 ORTHO05D005881 1.7e-34 150.2 203 68.5
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 1.7e-34 150.2 204 67.2
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 2.9e-34 149.4 202 53.5
MD12G1106800 Malus domestica HOM05D005036 ORTHO05D005881 3.8e-34 149.1 206 66.0
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.0e-34 148.7 208 66.3
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 6.5e-34 148.3 208 66.3
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 6.5e-34 148.3 208 66.3
Lalb_Chr02g0155461 Lupinus albus HOM05D005036 ORTHO05D005881 6.5e-34 148.3 204 65.2
RhsimUnG0004000 Rhododendron simsii HOM05D005036 ORTHO05D005881 6.5e-34 148.3 170 70.6
RhsimUnG0067400 Rhododendron simsii HOM05D005036 ORTHO05D005881 6.5e-34 148.3 170 70.6
Lj5g0011319 Lotus japonicus HOM05D005036 ORTHO05D005881 8.6e-34 147.9 209 62.7
AUR62041564 Chenopodium quinoa HOM05D005036 ORTHO05D005881 1.1e-33 147.5 205 65.9
Duzib128G0734 Durio zibethinus HOM05D005036 ORTHO05D005881 1.1e-33 147.5 209 65.6
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 1.5e-33 147.1 204 67.2
Thecc.05G071400 Theobroma cacao HOM05D005036 ORTHO05D005881 1.5e-33 147.1 211 64.5
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 1.9e-33 146.7 206 58.3
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.9e-33 146.7 204 67.2
ClCG10G019890 Citrullus lanatus HOM05D005036 ORTHO05D005881 2.5e-33 146.4 206 67.0
Nitab4.5_0000132g0510 Nicotiana tabacum HOM05D005036 ORTHO05D005881 2.5e-33 146.4 211 64.5
AL3G21130 Arabidopsis lyrata HOM05D005036 ORTHO05D005881 4.2e-33 145.6 209 58.4
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 4.2e-33 145.6 204 61.3
Potri.016G097900 Populus trichocarpa HOM05D005036 ORTHO05D005881 4.2e-33 145.6 190 69.5
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 5.5e-33 145.2 203 53.7
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 7.2e-33 144.8 205 65.9
AT3G09890 Arabidopsis thaliana HOM05D005036 ORTHO05D005881 9.5e-33 144.4 208 58.7
QL07p042294 Quercus lobata HOM05D005036 ORTHO05D005881 9.5e-33 144.4 235 58.3
Cc06_g04530 Coffea canephora HOM05D005036 ORTHO05D005881 1.2e-32 144.1 198 67.7
Thhalv10021529m.g Eutrema salsugineum HOM05D005036 ORTHO05D005881 1.2e-32 144.1 204 59.3
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 1.2e-32 144.1 204 66.7
Manes.08G013000 Manihot esculenta HOM05D005036 ORTHO05D005881 1.6e-32 143.7 204 67.2
Manes.09G062100 Manihot esculenta HOM05D005036 ORTHO05D005881 4.7e-32 142.1 204 66.2
Gohir.A01G214100 Gossypium hirsutum HOM05D005036 ORTHO05D005881 6.1e-32 141.7 205 64.9
TWI53G1582 Tripterygium wilfordii HOM05D005036 ORTHO05D005881 6.1e-32 141.7 208 64.9
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 8.0e-32 141.4 201 43.8
TAR623G1598 Trochodendron aralioides HOM05D005036 ORTHO05D005881 8.0e-32 141.4 204 60.8
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 1.0e-31 141.0 209 62.2
Sc02g0001470 Simmondsia chinensis HOM05D005036 ORTHO05D005881 1.0e-31 141.0 205 54.6
EL10Ac7g16693 Beta vulgaris HOM05D005036 ORTHO05D005881 1.4e-31 140.6 206 63.1
Duzib093G0365 Durio zibethinus HOM05D005036 ORTHO05D005881 1.4e-31 140.6 211 63.5
BcaC01g04251 Brassica carinata HOM05D005036 ORTHO05D005881 1.8e-31 140.2 200 60.5
CANSAT80G0983 Cannabis sativa HOM05D005036 ORTHO05D005881 1.8e-31 140.2 204 65.2
Sopen10g033320 Solanum pennellii HOM05D005036 ORTHO05D005881 1.8e-31 140.2 206 64.6
arahy.Tifrunner.gnm1.ann1.HJT5F9 Arachis hypogaea HOM05D005036 ORTHO05D005881 2.3e-31 139.8 201 63.7
arahy.Tifrunner.gnm1.ann1.LB0AEW Arachis hypogaea HOM05D005036 ORTHO05D005881 2.3e-31 139.8 201 63.7
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 2.3e-31 139.8 201 43.3
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 3.0e-31 139.4 201 42.8
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 3.0e-31 139.4 201 42.8
HanXRQChr13g0400721 Helianthus annuus HOM05D005036 ORTHO05D005881 3.0e-31 139.4 202 65.8
Hma1.2p1_0547F.1_g176530 Hydrangea macrophylla HOM05D005036 ORTHO05D005881 3.0e-31 139.4 173 71.7
PGR004G0584 Punica granatum HOM05D005036 ORTHO05D005881 4.0e-31 139.0 209 64.6
Lsat_1_v5_gn_6_28400 Lactuca sativa HOM05D005036 ORTHO05D005881 5.2e-31 138.7 203 63.5
Phvul.007G151800 Phaseolus vulgaris HOM05D005036 ORTHO05D005881 5.2e-31 138.7 206 65.5
Prupe.7G125700 Prunus persica HOM05D005036 ORTHO05D005881 5.2e-31 138.7 206 65.0
VMungo0720G2361 Vigna mungo HOM05D005036 ORTHO05D005881 5.2e-31 138.7 206 64.6
Gohir.D01G201000 Gossypium hirsutum HOM05D005036 ORTHO05D005881 6.8e-31 138.3 205 63.9
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 6.8e-31 138.3 206 64.1
Hund20124 Selenicereus undatus HOM05D005036 ORTHO05D005881 1.5e-30 137.1 211 62.1
Carub.0003s0899 Capsella rubella HOM05D005036 ORTHO05D005881 4.4e-30 135.6 203 58.1
ECA233G6008 Erigeron canadensis HOM05D005036 ORTHO05D005881 5.7e-30 135.2 204 64.7
PSO339G6683 Papaver somniferum HOM05D005036 ORTHO05D005881 5.7e-30 135.2 191 63.9
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 7.5e-30 134.8 190 42.6
CSS0031942 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 7.5e-30 134.8 201 65.7
CSS0042807 Camellia sinensis var. sinensis HOM05D005036 ORTHO05D005881 7.5e-30 134.8 201 65.7
Glyma.13G146500 Glycine max HOM05D005036 ORTHO05D005881 1.7e-29 133.7 206 64.1
Sabra06G0095700 Salix brachista HOM05D005036 ORTHO05D005881 2.2e-29 133.3 193 66.8
Potri.006G121500 Populus trichocarpa HOM05D005036 ORTHO05D005881 2.8e-29 132.9 194 66.0
BcaB03g11582 Brassica carinata HOM05D005036 ORTHO05D005881 3.7e-29 132.5 207 57.0
Ca_08897_v3 Cicer arietinum L. HOM05D005036 ORTHO05D005881 4.9e-29 132.1 205 63.4
Glyma.10G059800 Glycine max HOM05D005036 ORTHO05D005881 4.9e-29 132.1 209 63.6
vmacro08795 Vaccinium macrocarpon HOM05D005036 ORTHO05D005881 4.9e-29 132.1 256 44.5
Sp3g08240 Schrenkiella parvula HOM05D005036 ORTHO05D005881 1.8e-28 130.2 202 48.5
COL.COLO4_26911 Corchorus olitorius HOM05D005036 ORTHO05D005881 4.1e-28 129.0 229 59.8
Psat6g076000 Pisum sativum HOM05D005036 ORTHO05D005881 1.2e-27 127.5 205 60.0
Gorai.002G245700 Gossypium raimondii HOM05D005036 ORTHO05D005881 1.0e-26 124.4 183 66.7
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 1.7e-26 123.6 210 51.9
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 2.3e-26 123.2 186 68.8
CDE06G0353 Ceratophyllum demersum HOM05D005036 ORTHO05D005881 2.9e-26 122.9 204 61.8
Medtr1g062770 Medicago truncatula HOM05D005036 ORTHO05D005881 1.5e-25 120.6 205 58.5
TPR.G20997 Trifolium pratense HOM05D005036 ORTHO05D005881 2.5e-25 119.8 205 60.0
Dinv37336 Davidia involucrata HOM05D005036 ORTHO05D005881 5.6e-25 118.6 145 63.4
Sc02g0001400 Simmondsia chinensis HOM05D005036 ORTHO05D005881 5.6e-25 118.6 201 49.3
Aa31LG3G2370 Aethionema arabicum HOM05D005036 ORTHO05D005881 9.5e-25 117.9 191 49.2
ATR0329G020 Amborella trichopoda HOM05D005036 ORTHO05D005881 6.1e-24 115.2 162 68.5
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 8.0e-24 114.8 132 66.7
DCAR_017666 Daucus carota HOM05D005036 ORTHO05D005881 4.0e-23 112.5 208 58.2
SGA_v2.0_scaffold75G24776 Striga asiatica HOM05D005036 ORTHO05D005881 1.5e-22 110.5 159 46.5
Lj3A990G72 Lonicera japonica HOM05D005036 ORTHO05D005881 2.2e-21 106.7 142 73.2
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 6.4e-21 105.1 203 35.5
MBI13_g13833_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.6e-19 100.5 178 51.7
SEGI_13906 Sequoiadendron giganteum HOM05D005036 ORTHO05D005881 6.0e-19 98.6 186 58.1
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 7.8e-19 98.2 203 36.9
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 7.8e-19 98.2 203 36.9
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 7.8e-19 98.2 198 43.4
BcaC05g29502 Brassica carinata HOM05D005036 ORTHO05D005881 1.7e-18 97.1 160 56.9
BcaC05g29503 Brassica carinata HOM05D005036 ORTHO05D005881 1.7e-18 97.1 160 56.9
C05p58170 Brassica napus HOM05D005036 ORTHO05D005881 1.7e-18 97.1 160 56.9
BolC5t34473H Brassica oleracea HOM05D005036 ORTHO05D005881 1.7e-18 97.1 160 56.9
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 1.7e-18 97.1 148 49.3
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 5.0e-18 95.5 203 36.5
A05p39150 Brassica napus HOM05D005036 ORTHO05D005881 6.6e-18 95.1 182 54.4
BraA05t22704Z Brassica rapa HOM05D005036 ORTHO05D005881 6.6e-18 95.1 182 54.4
MBI18_g12436_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 6.6e-18 95.1 154 67.5
MBI01_g04638_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-17 94.4 153 68.6
Zm00001eb003690 Zea mays HOM05D005036 ORTHO05D005881 1.5e-17 94.0 148 64.9
Carub.0003s0923 Capsella rubella HOM05D005036 ORTHO05D005881 1.9e-17 93.6 139 66.2
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 5.6e-17 92.0 203 36.0
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 3.6e-16 89.4 188 42.6
THA.LOC104816666 Tarenaya hassleriana HOM05D005036 ORTHO05D005881 1.4e-15 87.4 84 53.6
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 4.0e-15 85.9 145 46.9
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 6.8e-15 85.1 185 52.4
MBI16_g11024_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 2.0e-14 83.6 154 51.9
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 9.2e-12 74.7 162 40.7
Psat4g020880 Pisum sativum HOM05D005036 ORTHO05D005881 7.8e-11 71.6 81 69.1
SalBow1G6050 Salvia bowleyana HOM05D005223 ORTHO05D005881 1.0e-10 71.2 58 65.5
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.9e-10 69.3 62 59.7
Psat6g104720 Pisum sativum HOM05D001839 ORTHO05D001867 1.9e-09 67.0 167 29.9
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 4.3e-09 65.9 193 50.3
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.8e-08 63.2 63 57.1
SalBow5G3237 Salvia bowleyana HOM05D006370 ORTHO05D008324 2.8e-08 63.2 58 63.8
Solyc10g083870.2 Solanum lycopersicum HOM05D005036 ORTHO05D005881 6.2e-08 62.0 122 55.7
Ah.14g078370 Amaranthus hybridus HOM05D005036 ORTHO05D005881 5.2e-07 58.9 83 43.4
MD04G1089000 Malus domestica HOM05D005036 ORTHO05D005881 5.2e-07 58.9 118 51.7
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 4.4e-06 55.8 93 40.9
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 9.9e-06 54.7 61 39.3


User provided reference genes

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