Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold40G15445 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1828.5 924 100.0
SGA_v2.0_scaffold657G53382 Striga asiatica HOM05D003951 ORTHO05D005378 0.0e+00 1736.1 915 96.5
MSTRG.19211 Avicennia marina HOM05D003951 ORTHO05D005378 0.0e+00 1354.7 882 77.6
Migut.J00480 Erythranthe guttata HOM05D003951 ORTHO05D005378 0.0e+00 1342.4 882 77.0
SalBow3G1921 Salvia bowleyana HOM05D003951 ORTHO05D005378 0.0e+00 1294.6 883 74.6
Oeu038879.1 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1286.9 881 72.4
Oeu017004.2 Olea europaea HOM05D003951 ORTHO05D005378 0.0e+00 1271.9 909 70.1
Dinv30270 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1236.5 881 69.2
Dinv14244 Davidia involucrata HOM05D003951 ORTHO05D005378 0.0e+00 1229.2 881 69.1
Hma1.2p1_0590F.1_g185010 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 0.0e+00 1223.0 881 68.2
CSS0015540 Camellia sinensis var. sinensis HOM05D003951 ORTHO05D005378 0.0e+00 1213.4 879 68.4
Manes.03G061800 Manihot esculenta HOM05D003951 ORTHO05D005378 0.0e+00 1201.8 882 68.0
Nitab4.5_0010350g0010 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1194.9 879 66.3
TAR383G0035 Trochodendron aralioides HOM05D003951 ORTHO05D005378 0.0e+00 1188.3 881 66.4
Peaxi162Scf01195g00118 Petunia axillaris HOM05D003951 ORTHO05D005378 0.0e+00 1186.4 882 66.2
Nitab4.5_0000132g0420 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1186.0 882 65.6
QL12p029450 Quercus lobata HOM05D003951 ORTHO05D005378 0.0e+00 1182.9 881 66.7
Gohir.D06G093700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1182.2 885 66.3
Cfa013355 Carpinus fangiana HOM05D003951 ORTHO05D005378 0.0e+00 1179.9 881 66.5
GSVIVG01035648001 Vitis vinifera HOM05D003951 ORTHO05D005378 0.0e+00 1179.5 882 66.2
Gorai.010G108200 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1177.9 885 66.0
Thecc.09G042400 Theobroma cacao HOM05D003951 ORTHO05D005378 0.0e+00 1176.8 882 66.7
Gohir.A06G094100 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1174.8 885 65.9
Atru.chr7.2135 Acer truncatum HOM05D003951 ORTHO05D005378 0.0e+00 1171.4 882 65.9
Prupe.1G450600 Prunus persica HOM05D003951 ORTHO05D005378 0.0e+00 1171.4 881 65.7
Cc06_g04830 Coffea canephora HOM05D003951 ORTHO05D005378 0.0e+00 1169.1 881 65.9
Nitab4.5_0008726g0020 Nicotiana tabacum HOM05D003951 ORTHO05D005378 0.0e+00 1168.3 882 64.9
Potri.018G039800 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1166.0 884 64.8
Duzib187G0774 Durio zibethinus HOM05D003951 ORTHO05D005378 0.0e+00 1164.8 882 65.4
CiPaw.08G024600 Carya illinoinensis HOM05D003951 ORTHO05D005378 0.0e+00 1160.2 881 65.8
Solyc09g008610.4 Solanum lycopersicum HOM05D003951 ORTHO05D005378 0.0e+00 1158.3 879 64.6
Potri.006G240300 Populus trichocarpa HOM05D003951 ORTHO05D005378 0.0e+00 1156.0 884 64.5
MD08G1115900 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1154.4 881 65.5
Sopen09g003410 Solanum pennellii HOM05D003951 ORTHO05D005378 0.0e+00 1153.7 882 63.9
CAN.G1759.1 Capsicum annuum HOM05D003951 ORTHO05D005378 0.0e+00 1153.3 883 64.6
Sabra06G0187900 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1151.3 881 64.1
Cpa.g.sc7.257 Carica papaya HOM05D003951 ORTHO05D005378 0.0e+00 1147.9 882 65.1
DCAR_004489 Daucus carota HOM05D003951 ORTHO05D005378 0.0e+00 1146.3 956 61.5
Gohir.A13G186000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1146.3 882 64.4
Aqoxy7G01531 Aquilegia oxysepala HOM05D003951 ORTHO05D005378 0.0e+00 1146.0 881 63.6
Gohir.D13G192700 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1145.6 882 64.4
Gorai.013G218700 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1144.8 882 64.3
Lj8A588G18 Lonicera japonica HOM05D003951 ORTHO05D005378 0.0e+00 1144.0 881 64.4
PGSC0003DMG400012982 Solanum tuberosum HOM05D003951 ORTHO05D005378 0.0e+00 1144.0 882 63.6
MD15G1095600 Malus domestica HOM05D003951 ORTHO05D005378 0.0e+00 1142.9 881 64.5
Nn2g11661 Nelumbo nucifera HOM05D003951 ORTHO05D005378 0.0e+00 1140.9 881 63.0
Ciclev10007348m.g Citrus clementina HOM05D003951 ORTHO05D005378 0.0e+00 1137.1 882 63.7
Gorai.004G290400 Gossypium raimondii HOM05D003951 ORTHO05D005378 0.0e+00 1135.9 882 64.6
Sabra18G0039700 Salix brachista HOM05D003951 ORTHO05D005378 0.0e+00 1135.6 884 63.5
Gohir.D08G272000 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1134.8 882 64.5
TWI32G0786 Tripterygium wilfordii HOM05D003951 ORTHO05D005378 0.0e+00 1132.9 882 63.0
RcHm_v2.0_Chr6g0305971 Rosa chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1132.5 882 64.3
ECA233G3193 Erigeron canadensis HOM05D003951 ORTHO05D005378 0.0e+00 1130.2 881 63.9
CANSAT25G2930 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1125.2 881 63.2
vmacro10453 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 0.0e+00 1124.8 894 63.1
FAN27G3265 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1123.2 882 63.9
FAN15G0863 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1122.8 882 63.8
FvH4_2g35850 Fragaria vesca HOM05D003951 ORTHO05D005378 0.0e+00 1121.3 882 63.7
PSO210G0075 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1120.1 882 63.4
Lsat_1_v5_gn_6_63741 Lactuca sativa HOM05D003951 ORTHO05D005378 0.0e+00 1119.8 888 63.1
Gohir.A08G250500 Gossypium hirsutum HOM05D003951 ORTHO05D005378 0.0e+00 1119.4 882 63.8
PSO210G7231 Papaver somniferum HOM05D003951 ORTHO05D005378 0.0e+00 1119.0 882 63.3
FAN20G1017 Fragaria x ananassa HOM05D003951 ORTHO05D005378 0.0e+00 1118.6 882 63.8
COL.COLO4_18674 Corchorus olitorius HOM05D003951 ORTHO05D005378 0.0e+00 1117.8 855 64.8
PGR044G0887 Punica granatum HOM05D003951 ORTHO05D005378 0.0e+00 1115.9 879 62.8
Glyma.04G082000 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1111.3 881 62.9
Lj1g0011830 Lotus japonicus HOM05D003951 ORTHO05D005378 0.0e+00 1109.7 881 62.5
Thhalv10012570m.g Eutrema salsugineum HOM05D003951 ORTHO05D005378 0.0e+00 1107.8 881 61.6
MBI04_g14936_MAGBIO Magnolia biondii HOM05D003951 ORTHO05D005378 0.0e+00 1107.8 881 60.8
Eucgr.C02905 Eucalyptus grandis HOM05D003951 ORTHO05D005378 0.0e+00 1105.1 882 62.5
Hund19527 Selenicereus undatus HOM05D003951 ORTHO05D005378 0.0e+00 1105.1 878 62.4
HanXRQChr08g0221151 Helianthus annuus HOM05D003951 ORTHO05D005378 0.0e+00 1102.8 882 63.6
Psat5g022720 Pisum sativum HOM05D003951 ORTHO05D005378 0.0e+00 1100.9 881 62.0
Sp6g32040 Schrenkiella parvula HOM05D003951 ORTHO05D005378 0.0e+00 1100.5 881 61.4
Glyma.06G083700 Glycine max HOM05D003951 ORTHO05D005378 0.0e+00 1099.0 881 62.1
Lalb_Chr08g0243161 Lupinus albus HOM05D003951 ORTHO05D005378 0.0e+00 1098.6 882 61.8
BcaNung01934 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1098.2 881 61.2
THA.LOC104814774 Tarenaya hassleriana HOM05D003951 ORTHO05D005378 0.0e+00 1095.1 882 61.6
Medtr3g110090 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1093.6 880 62.2
Medtr3g110140 Medicago truncatula HOM05D003951 ORTHO05D005378 0.0e+00 1092.4 881 62.0
arahy.Tifrunner.gnm1.ann1.ZA6ZKK Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1091.3 881 61.1
CARHR201660 Cardamine hirsuta HOM05D003951 ORTHO05D005378 0.0e+00 1091.3 881 60.6
VMungo1309G1090 Vigna mungo HOM05D003951 ORTHO05D005378 0.0e+00 1090.1 881 61.5
Sc23g0005190 Simmondsia chinensis HOM05D003951 ORTHO05D005378 0.0e+00 1087.0 882 61.0
TPR.G1335 Trifolium pratense HOM05D003951 ORTHO05D005378 0.0e+00 1085.5 881 61.3
arahy.Tifrunner.gnm1.ann1.6KB6B4 Arachis hypogaea HOM05D003951 ORTHO05D005378 0.0e+00 1084.7 881 60.7
BcaC03g13375 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1084.7 881 60.3
AT5G11560 Arabidopsis thaliana HOM05D003951 ORTHO05D005378 0.0e+00 1084.3 881 60.5
Carub.0006s1003 Capsella rubella HOM05D003951 ORTHO05D005378 0.0e+00 1084.3 881 60.6
CANSAT56G2409 Cannabis sativa HOM05D003951 ORTHO05D005378 0.0e+00 1083.6 886 61.3
AL6G22230 Arabidopsis lyrata HOM05D003951 ORTHO05D005378 0.0e+00 1082.8 881 60.3
EL10Ac2g04048 Beta vulgaris HOM05D003951 ORTHO05D005378 0.0e+00 1082.4 882 61.0
Ca_15606_v3 Cicer arietinum L. HOM05D003951 ORTHO05D005378 0.0e+00 1079.7 881 60.8
BolC2t06471H Brassica oleracea HOM05D003951 ORTHO05D005378 0.0e+00 1078.9 881 60.2
BcaB08g37043 Brassica carinata HOM05D003951 ORTHO05D005378 0.0e+00 1078.5 881 60.6
C02p05210 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1078.2 881 60.0
A10p26200 Brassica napus HOM05D003951 ORTHO05D005378 0.0e+00 1077.8 881 60.8
BraA10t44677Z Brassica rapa HOM05D003951 ORTHO05D005378 0.0e+00 1077.8 881 60.8
Aa31LG3G15640 Aethionema arabicum HOM05D003951 ORTHO05D005378 0.0e+00 1075.1 882 60.1
BcaC04g19214 Brassica carinata HOM05D003951 ORTHO05D005378 6.3e-312 1073.5 882 60.7
C09p65250 Brassica napus HOM05D003951 ORTHO05D005378 2.5e-311 1072.0 882 60.7
CANSAT56G0789 Cannabis sativa HOM05D003951 ORTHO05D005378 4.4e-311 1071.2 886 61.1
AUR62009306 Chenopodium quinoa HOM05D003951 ORTHO05D005378 4.4e-311 1071.2 882 59.5
AUR62043518 Chenopodium quinoa HOM05D003951 ORTHO05D005378 7.6e-311 1070.5 882 59.5
BolC9t59353H Brassica oleracea HOM05D003951 ORTHO05D005378 9.5e-311 1070.1 882 60.4
Lalb_Chr23g0269551 Lupinus albus HOM05D003951 ORTHO05D005378 2.1e-310 1068.9 881 60.4
Phvul.009G107800 Phaseolus vulgaris HOM05D003951 ORTHO05D005378 2.1e-310 1068.9 881 61.1
AUR62041721 Chenopodium quinoa HOM05D003951 ORTHO05D005378 1.8e-309 1065.8 882 59.2
Sed0024259 Sechium edule HOM05D003951 ORTHO05D005378 2.4e-309 1065.4 882 59.3
MELO3C011151.2 Cucumis melo HOM05D003951 ORTHO05D005378 1.0e-307 1060.1 882 59.3
CsaV3_2G030980 Cucumis sativus L. HOM05D003951 ORTHO05D005378 4.9e-307 1057.7 884 58.8
Sed0007642 Sechium edule HOM05D003951 ORTHO05D005378 4.9e-307 1057.7 882 59.2
Ah.10g035090 Amaranthus hybridus HOM05D003951 ORTHO05D005378 9.3e-306 1053.5 879 59.3
Nitab4.5_0004281g0080 Nicotiana tabacum HOM05D003951 ORTHO05D005378 1.5e-303 1046.2 809 63.2
ClCG08G012310 Citrullus lanatus HOM05D003951 ORTHO05D005378 1.9e-303 1045.8 887 58.3
BraA02t05087Z Brassica rapa HOM05D003951 ORTHO05D005378 6.5e-299 1030.8 881 58.3
ATR0315G102 Amborella trichopoda HOM05D003951 ORTHO05D005378 8.5e-299 1030.4 871 57.6
CDE09G1231 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 8.5e-299 1030.4 878 58.8
SHI18663 Sapria himalayana HOM05D003951 ORTHO05D005378 2.2e-294 1015.8 813 61.7
Os05g0230600 Oryza sativa ssp. japonica HOM05D003951 ORTHO05D005378 6.3e-286 987.6 881 56.2
Zm00001eb350390 Zea mays HOM05D003951 ORTHO05D005378 2.0e-284 982.6 881 55.6
A02p01070 Brassica napus HOM05D003951 ORTHO05D005378 3.0e-280 968.8 881 56.0
Zm00001eb284300 Zea mays HOM05D003951 ORTHO05D005378 2.6e-279 965.7 881 55.3
Ah.16g105420 Amaranthus hybridus HOM05D003951 ORTHO05D005378 9.4e-274 947.2 911 54.4
CDE02G1137 Ceratophyllum demersum HOM05D003951 ORTHO05D005378 4.5e-252 875.2 879 53.0
Actinidia14667 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.5e-242 843.6 528 76.9
Pp3c24_6940 Physcomitrium patens HOM05D003951 ORTHO05D005378 1.9e-226 790.0 884 46.8
Mapoly0001s0045 Marchantia polymorpha HOM05D003951 ORTHO05D005378 2.0e-223 780.0 885 47.3
Haze_16526 Corylus avellana HOM05D003951 ORTHO05D005378 1.2e-199 701.0 602 57.6
SMO361G0709 Selaginella moellendorffii HOM05D003951 ORTHO05D005378 6.4e-198 695.3 871 44.3
Ah.16g105530 Amaranthus hybridus HOM05D003951 ORTHO05D005378 2.5e-194 683.3 516 66.3
Lj7A704G78 Lonicera japonica HOM05D003951 ORTHO05D005378 1.5e-175 620.9 601 53.7
Ah.16g105540 Amaranthus hybridus HOM05D003951 ORTHO05D005378 1.3e-174 617.8 600 51.2
AagrBONN_evm.TU.Sc2ySwM_228.1359 Anthoceros agrestis HOM05D003951 ORTHO05D005378 1.1e-165 588.2 711 43.9
TAR626G1339 Trochodendron aralioides HOM05D003951 ORTHO05D005378 9.4e-157 558.5 349 77.1
Lj7C704T11 Lonicera japonica HOM05D003951 ORTHO05D005378 7.3e-133 479.2 282 83.0
Haze_16527 Corylus avellana HOM05D003951 ORTHO05D005378 3.6e-132 476.9 282 83.7
HPP92_003925 Vanilla planifolia HOM05D003951 ORTHO05D005378 3.6e-124 450.3 539 47.9
Gohir.A08G250566 Gossypium hirsutum HOM05D003951 ORTHO05D005378 4.9e-121 439.9 268 81.0
Actinidia15735 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.5e-117 428.3 720 38.3
TAR626G0188 Trochodendron aralioides HOM05D003951 ORTHO05D005378 2.4e-107 394.4 275 70.9
CBR_g46228 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-95 353.6 552 37.7
vmacro07087 Vaccinium macrocarpon HOM05D003951 ORTHO05D005378 6.0e-95 353.2 681 36.4
PRCOL_00001466 Prasinoderma coloniale HOM05D003951 ORTHO05D005378 5.6e-93 346.7 666 34.5
Cre01.g042550 Chlamydomonas reinhardtii HOM05D003951 ORTHO05D005378 6.0e-87 326.6 802 31.5
Actinidia14668 Actinidia chinensis HOM05D003951 ORTHO05D005378 2.3e-86 324.7 311 53.7
MCO05G363 Micromonas commoda HOM05D003951 ORTHO05D005378 2.3e-78 298.1 414 40.8
Hma1.2p1_1163F.1_g262790 Hydrangea macrophylla HOM05D003951 ORTHO05D005378 7.2e-72 276.6 286 50.3
Psat2g043440 Pisum sativum HOM05D003951 ORTHO05D005378 3.1e-67 261.2 257 50.6
Lj6g0012970 Lotus japonicus HOM05D003951 ORTHO05D006115 6.9e-59 233.4 254 47.6
Nn3g18131 Nelumbo nucifera HOM05D003951 ORTHO05D005378 3.9e-54 217.6 134 84.3
CBR_g46226 Chara braunii HOM05D003951 ORTHO05D005378 1.3e-49 202.6 182 55.5
BcaB01g05473 Brassica carinata HOM05D003951 ORTHO05D005378 1.2e-47 196.1 115 82.6
Actinidia31233 Actinidia chinensis HOM05D006865 ORTHO05D009005 2.1e-47 195.3 140 69.3
C03p05840 Brassica napus HOM05D003951 ORTHO05D005378 1.4e-46 192.6 111 84.7
Actinidia13321 Actinidia chinensis HOM05D003951 ORTHO05D005378 1.5e-45 189.1 224 44.2
DCAR_004486 Daucus carota HOM05D003951 ORTHO05D035008 2.2e-44 185.3 105 82.9
BolC3t13096H Brassica oleracea HOM05D003951 ORTHO05D005378 1.3e-41 176.0 111 80.2
TAR626G1232 Trochodendron aralioides HOM05D003951 ORTHO05D005378 1.7e-41 175.6 225 40.4
unitig_22.g5110 Utricularia gibba HOM05D003951 ORTHO05D020105 3.0e-38 164.9 267 37.8
Peaxi162Scf00110g00822 Petunia axillaris HOM05D003951 ORTHO05D005378 4.4e-37 161.0 188 51.1
Cfa023291 Carpinus fangiana HOM05D003951 ORTHO05D005378 8.8e-30 136.7 315 30.8
Hma1.2p1_1163F.1_g262780 Hydrangea macrophylla HOM05D003951 ORTHO05D033496 3.8e-25 121.3 71 88.7
A03p05100 Brassica napus HOM05D003951 ORTHO05D033496 2.3e-22 112.1 120 57.5
BraA03t09844Z Brassica rapa HOM05D003951 ORTHO05D033496 2.3e-22 112.1 120 57.5
Peaxi162Scf00110g00823 Petunia axillaris HOM05D003951 ORTHO05D305850 6.4e-20 104.0 183 35.5
CiPaw.07G205600 Carya illinoinensis HOM05D003951 ORTHO05D005378 2.4e-19 102.1 81 58.0
Peaxi162Scf00110g00821 Petunia axillaris HOM05D003951 ORTHO05D035008 2.7e-18 98.6 82 58.5
EL10Ac6g13930 Beta vulgaris HOM05D001881 ORTHO05D001856 2.3e-17 95.5 64 70.3
CAN.G541.23 Capsicum annuum HOM05D004796 ORTHO05D006527 6.6e-17 94.0 53 77.4
TAR629G0021 Trochodendron aralioides HOM05D003951 ORTHO05D000285 4.3e-16 91.3 167 34.7
Dinv34398 Davidia involucrata HOM05D003951 ORTHO05D005378 1.2e-15 89.7 63 65.1
Ah.04g155890 Amaranthus hybridus HOM05D003518 ORTHO05D031015 1.7e-12 79.3 60 66.7
Ah.05g173020 Amaranthus hybridus HOM05D003951 ORTHO05D031015 1.6e-10 72.8 60 61.7
Ah.05g172920 Amaranthus hybridus HOM05D003951 ORTHO05D031015 3.5e-10 71.6 60 61.7
Psat1g107320 Pisum sativum HOM05D001108 ORTHO05D001619 6.8e-06 57.4 115 29.6
Ah.04g157730 Amaranthus hybridus HOM05D031501 ORTHO05D060762 8.9e-06 57.0 37 73.0


User provided reference genes

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