Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold408G51088 Striga asiatica HOM05D006022 ORTHO05D007649 2.2e-171 605.5 296 100.0
SGA_v2.0_scaffold83G26437 Striga asiatica HOM05D000006 ORTHO05D000001 5.3e-77 292.0 298 57.0
SGA_v2.0_scaffold453G51880 Striga asiatica HOM05D000959 ORTHO05D000775 1.9e-55 220.3 186 64.0
SGA_v2.0_scaffold185G40083 Striga asiatica HOM05D002303 ORTHO05D012836 6.3e-46 188.7 158 63.9
SGA_v2.0_scaffold152G36792 Striga asiatica HOM05D001336 ORTHO05D012836 2.5e-42 176.8 166 60.8
SGA_v2.0_scaffold169G38721 Striga asiatica HOM05D002942 ORTHO05D003270 1.0e-40 171.4 233 48.5
SGA_v2.0_scaffold23G10127 Striga asiatica HOM05D000234 ORTHO05D012836 3.9e-40 169.5 174 57.5
SGA_v2.0_scaffold71G23746 Striga asiatica HOM05D000234 ORTHO05D012836 1.3e-38 164.5 142 62.7
SGA_v2.0_scaffold130G34351 Striga asiatica HOM05D006022 ORTHO05D007649 9.4e-34 148.3 131 62.6
SGA_v2.0_scaffold49G18107 Striga asiatica HOM05D006022 ORTHO05D007649 4.0e-32 142.9 83 84.3
SGA_v2.0_scaffold70G23686 Striga asiatica HOM05D006014 ORTHO05D007608 3.8e-27 126.3 155 50.3
SGA_v2.0_scaffold90G27784 Striga asiatica HOM05D002693 ORTHO05D008074 2.7e-25 120.2 175 46.3
SGA_v2.0_scaffold136G35036 Striga asiatica HOM05D000942 ORTHO05D405555 3.2e-18 96.7 74 71.6
vmacro11345 Vaccinium macrocarpon HOM05D006022 ORTHO05D007649 1.8e-16 90.9 125 43.2
Oeu009974.1 Olea europaea HOM05D006022 ORTHO05D007649 2.3e-16 90.5 145 40.7
Migut.E01259 Erythranthe guttata HOM05D006022 ORTHO05D007649 4.0e-16 89.7 130 43.1
Dinv38822 Davidia involucrata HOM05D006022 ORTHO05D007406 6.8e-16 89.0 125 40.8
CSS0021468 Camellia sinensis var. sinensis HOM05D006022 ORTHO05D007649 8.8e-16 88.6 121 43.0
Cc08_g16230 Coffea canephora HOM05D006022 ORTHO05D007649 8.8e-16 88.6 66 62.1
Lsat_1_v5_gn_6_8380 Lactuca sativa HOM05D006022 ORTHO05D007649 2.6e-15 87.0 118 41.5
SGA_v2.0_scaffold29G12117 Striga asiatica HOM05D001336 ORTHO05D000001 3.4e-15 86.7 99 49.5
Rhsim02G0245100 Rhododendron simsii HOM05D006022 ORTHO05D007649 7.5e-15 85.5 63 63.5
RhsimUnG0007600 Rhododendron simsii HOM05D006022 ORTHO05D007649 7.5e-15 85.5 63 63.5
Ciclev10018527m.g Citrus clementina HOM05D006022 ORTHO05D007649 9.8e-15 85.1 84 47.6
Atru.chr9.1963 Acer truncatum HOM05D006022 ORTHO05D007649 1.7e-14 84.3 68 58.8
Actinidia22171 Actinidia chinensis HOM05D006022 ORTHO05D007649 1.7e-14 84.3 63 60.3
GSVIVG01019556001 Vitis vinifera HOM05D006022 ORTHO05D007649 2.2e-14 84.0 86 53.5
MSTRG.1801 Avicennia marina HOM05D006022 ORTHO05D007649 2.8e-14 83.6 66 60.6
Prupe.5G122300 Prunus persica HOM05D006022 ORTHO05D007649 2.8e-14 83.6 148 35.8
CAN.G390.10 Capsicum annuum HOM05D006022 ORTHO05D007649 4.9e-14 82.8 119 41.2
MD14G1130300 Malus domestica HOM05D006022 ORTHO05D007649 6.3e-14 82.4 124 40.3
EL10Ac5g12933 Beta vulgaris HOM05D006022 ORTHO05D007649 8.3e-14 82.0 85 49.4
QL02p030100 Quercus lobata HOM05D006022 ORTHO05D007649 8.3e-14 82.0 121 39.7
Sc22g0004930 Simmondsia chinensis HOM05D006022 ORTHO05D007649 1.1e-13 81.6 125 40.8
SGA_v2.0_scaffold111G31401 Striga asiatica HOM05D006022 ORTHO05D007649 1.1e-13 81.6 84 52.4
ECA233G0648 Erigeron canadensis HOM05D006022 ORTHO05D007649 1.4e-13 81.3 141 36.9
FAN04G2854 Fragaria x ananassa HOM05D006022 ORTHO05D007649 1.4e-13 81.3 66 53.0
unitig_26.g9566 Utricularia gibba HOM05D006022 ORTHO05D007649 1.4e-13 81.3 61 60.7
Peaxi162Scf00117g00919 Petunia axillaris HOM05D006022 ORTHO05D007649 1.8e-13 80.9 119 41.2
CiPaw.12G081600 Carya illinoinensis HOM05D006022 ORTHO05D007649 2.4e-13 80.5 121 38.8
Manes.01G050200 Manihot esculenta HOM05D006022 ORTHO05D007649 2.4e-13 80.5 127 38.6
VMungo0251G1998 Vigna mungo HOM05D006022 ORTHO05D007649 2.4e-13 80.5 124 37.9
MD06G1109300 Malus domestica HOM05D006022 ORTHO05D007649 3.1e-13 80.1 125 39.2
Potri.001G089900 Populus trichocarpa HOM05D006022 ORTHO05D007649 3.1e-13 80.1 103 43.7
AUR62010858 Chenopodium quinoa HOM05D006022 ORTHO05D007649 4.1e-13 79.7 99 44.4
Medtr8g099585 Medicago truncatula HOM05D006022 ORTHO05D007649 4.1e-13 79.7 120 39.2
Hund11381 Selenicereus undatus HOM05D006022 ORTHO05D007649 4.1e-13 79.7 66 57.6
Cfa011987 Carpinus fangiana HOM05D006022 ORTHO05D007649 5.4e-13 79.3 121 39.7
FAN18G3678 Fragaria x ananassa HOM05D006022 ORTHO05D007649 5.4e-13 79.3 66 53.0
Haze_09085 Corylus avellana HOM05D006022 ORTHO05D007649 7.0e-13 79.0 121 39.7
Hma1.2p1_0359F.1_g135140 Hydrangea macrophylla HOM05D006022 ORTHO05D007649 7.0e-13 79.0 64 54.7
CANSAT21G0687 Cannabis sativa HOM05D006022 ORTHO05D007649 9.2e-13 78.6 66 54.5
AUR62019856 Chenopodium quinoa HOM05D006022 ORTHO05D007649 9.2e-13 78.6 99 43.4
HanXRQChr10g0316931 Helianthus annuus HOM05D006022 ORTHO05D007649 9.2e-13 78.6 114 41.2
Nitab4.5_0004010g0010 Nicotiana tabacum HOM05D006022 ORTHO05D007649 9.2e-13 78.6 119 39.5
Sabra01G0066300 Salix brachista HOM05D006022 ORTHO05D007649 9.2e-13 78.6 66 56.1
Solyc12g055910.3 Solanum lycopersicum HOM05D006022 ORTHO05D007649 9.2e-13 78.6 119 37.8
Sopen12g024380 Solanum pennellii HOM05D006022 ORTHO05D007649 9.2e-13 78.6 119 37.8
Lalb_Chr05g0224031 Lupinus albus HOM05D006022 ORTHO05D007649 1.2e-12 78.2 125 39.2
Psat7g023280 Pisum sativum HOM05D006022 ORTHO05D007649 1.2e-12 78.2 125 38.4
Glyma.08G023800 Glycine max HOM05D006022 ORTHO05D007649 1.6e-12 77.8 126 37.3
RcHm_v2.0_Chr7g0194241 Rosa chinensis HOM05D006022 ORTHO05D007649 1.6e-12 77.8 66 51.5
FvH4_5g04850 Fragaria vesca HOM05D006022 ORTHO05D007649 2.0e-12 77.4 66 51.5
FAN18G0793 Fragaria x ananassa HOM05D006022 ORTHO05D007649 2.0e-12 77.4 66 51.5
PSO170G1024 Papaver somniferum HOM05D006022 ORTHO05D007649 2.0e-12 77.4 114 39.5
Ca_17472_v3 Cicer arietinum L. HOM05D006022 ORTHO05D007649 2.7e-12 77.0 123 38.2
Duzib084G0652 Durio zibethinus HOM05D006022 ORTHO05D007649 2.7e-12 77.0 76 50.0
MBI07_g39841_MAGBIO Magnolia biondii HOM05D006022 ORTHO05D007649 2.7e-12 77.0 134 37.3
SGA_v2.0_scaffold58G20565 Striga asiatica HOM05D000764 ORTHO05D004953 4.5e-12 76.3 70 60.0
Gohir.A08G112400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 5.9e-12 75.9 77 48.1
Gohir.D08G125400 Gossypium hirsutum HOM05D006022 ORTHO05D007649 5.9e-12 75.9 77 48.1
Gorai.004G132300 Gossypium raimondii HOM05D006022 ORTHO05D007649 5.9e-12 75.9 77 48.1
Phvul.002G299600 Phaseolus vulgaris HOM05D006022 ORTHO05D007649 5.9e-12 75.9 124 36.3
Hund14211 Selenicereus undatus HOM05D006022 ORTHO05D007649 5.9e-12 75.9 65 56.9
Glyma.05G217800 Glycine max HOM05D006022 ORTHO05D007649 7.8e-12 75.5 124 37.1
Thecc.03G300300 Theobroma cacao HOM05D006022 ORTHO05D007649 7.8e-12 75.5 63 55.6
Nn1g00246 Nelumbo nucifera HOM05D006022 ORTHO05D007649 1.3e-11 74.7 66 54.5
ATR0602G083 Amborella trichopoda HOM05D006022 ORTHO05D007649 2.3e-11 73.9 147 34.7
TPR.G3389 Trifolium pratense HOM05D006022 ORTHO05D007649 6.6e-11 72.4 121 37.2
Lj4g0024036 Lotus japonicus HOM05D006022 ORTHO05D007649 1.1e-10 71.6 63 54.0
MELO3C005765.2 Cucumis melo HOM05D006022 ORTHO05D007649 1.5e-10 71.2 119 38.7
CsaV3_5G001870 Cucumis sativus L. HOM05D006022 ORTHO05D007649 1.5e-10 71.2 119 38.7
TWI81G0375 Tripterygium wilfordii HOM05D006022 ORTHO05D007649 1.9e-10 70.9 66 50.0
Psat4g095080 Pisum sativum HOM05D006022 ORTHO05D007649 2.5e-10 70.5 85 45.9
Ah.12g052650 Amaranthus hybridus HOM05D006022 ORTHO05D007649 4.3e-10 69.7 65 55.4
PGR042G3794 Punica granatum HOM05D006022 ORTHO05D007649 4.3e-10 69.7 63 52.4
Aqoxy5G04291 Aquilegia oxysepala HOM05D006022 ORTHO05D007649 5.6e-10 69.3 119 35.3
Sed0008879 Sechium edule HOM05D006022 ORTHO05D007649 9.5e-10 68.6 63 50.8
SEGI_16880 Sequoiadendron giganteum HOM05D006022 ORTHO05D007649 9.5e-10 68.6 118 36.4
AT4G10930 Arabidopsis thaliana HOM05D006022 ORTHO05D007649 2.1e-09 67.4 65 52.3
SGA_v2.0_scaffold144G35972 Striga asiatica HOM05D000942 ORTHO05D012836 3.6e-09 66.6 47 66.0
THA.LOC104807002 Tarenaya hassleriana HOM05D006022 ORTHO05D007649 6.1e-09 65.9 65 49.2
SGA_v2.0_scaffold226G43142 Striga asiatica HOM05D000681 ORTHO05D011601 8.0e-09 65.5 64 54.7
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.0e-08 65.1 38 81.6
Carub.0006s2968 Capsella rubella HOM05D006022 ORTHO05D007649 1.2e-07 61.6 65 47.7
Sp6g06550 Schrenkiella parvula HOM05D006022 ORTHO05D007649 1.2e-07 61.6 65 49.2
A03p29210 Brassica napus HOM05D006022 ORTHO05D007649 1.5e-07 61.2 65 49.2
BcaB01g02727 Brassica carinata HOM05D006022 ORTHO05D007649 2.0e-07 60.8 65 49.2
BcaC01g04650 Brassica carinata HOM05D006022 ORTHO05D007649 2.0e-07 60.8 65 49.2
C03p35290 Brassica napus HOM05D006022 ORTHO05D007649 2.0e-07 60.8 65 49.2
BolC3t15840H Brassica oleracea HOM05D006022 ORTHO05D007649 2.0e-07 60.8 65 49.2
BraA03t12116Z Brassica rapa HOM05D006022 ORTHO05D007649 3.4e-07 60.1 63 49.2
arahy.Tifrunner.gnm1.ann1.MN1JRI Arachis hypogaea HOM05D006022 ORTHO05D007649 5.7e-07 59.3 160 30.0
SMO364G0157 Selaginella moellendorffii HOM05D003349 ORTHO05D003898 5.7e-07 59.3 79 41.8
AL6G45030 Arabidopsis lyrata HOM05D006022 ORTHO05D007649 7.5e-07 58.9 63 46.0
Zm00001eb209080 Zea mays HOM05D006022 ORTHO05D007649 9.8e-07 58.5 63 47.6
Lj2A165T43 Lonicera japonica HOM05D006022 ORTHO05D007649 1.7e-06 57.8 117 34.2
AagrBONN_evm.TU.Sc2ySwM_228.3550 Anthoceros agrestis HOM05D006022 ORTHO05D007649 2.2e-06 57.4 63 49.2
TAR375G1078 Trochodendron aralioides HOM05D006022 ORTHO05D007649 2.9e-06 57.0 52 48.1
SGA_v2.0_scaffold64G22084 Striga asiatica HOM05D000324 ORTHO05D000002 3.7e-06 56.6 97 37.1
SGA_v2.0_scaffold13G06746 Striga asiatica HOM05D000942 ORTHO05D016434 6.4e-06 55.8 92 39.1


User provided reference genes

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