Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 3.6e-147 525.0 291 100.0
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 9.8e-60 234.6 291 59.8
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 6.8e-37 158.7 111 78.4
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 4.2e-26 122.9 88 67.0
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 6.6e-24 115.5 78 70.5
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 6.6e-24 115.5 75 72.0
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 3.3e-23 113.2 174 51.1
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 7.3e-23 112.1 77 71.4
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 2.1e-22 110.5 75 72.0
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 2.8e-22 110.2 75 70.7
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 6.2e-22 109.0 78 67.9
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 3.1e-21 106.7 175 52.0
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 2.2e-19 100.5 80 63.8
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 6.4e-19 99.0 77 64.9
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 3.0e-16 90.1 183 39.3
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.9e-16 89.7 62 69.4
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 2.5e-15 87.0 76 52.6
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 4.3e-15 86.3 58 72.4
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 7.4e-15 85.5 51 78.4
VMungo0720G1459 Vigna mungo HOM05D012259 ORTHO05D008631 3.7e-14 83.2 65 64.6
Sc02g0005780 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.1e-13 81.6 135 54.1
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.8e-13 80.9 58 65.5
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 5.3e-13 79.3 49 67.3
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 5.8e-12 75.9 44 81.8
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 7.6e-12 75.5 43 79.1
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 1.7e-11 74.3 44 79.5
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 2.2e-11 73.9 47 70.2
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 2.9e-11 73.6 43 79.1
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 4.9e-11 72.8 44 77.3
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 4.9e-11 72.8 41 82.9
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 8.4e-11 72.0 42 83.3
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 1.1e-10 71.6 42 81.0
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 1.4e-10 71.2 43 79.1
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.9e-10 70.9 44 75.0
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.9e-10 70.9 44 75.0
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 1.9e-10 70.9 41 80.5
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 2.5e-10 70.5 41 78.0
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 2.5e-10 70.5 43 76.7
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 2.5e-10 70.5 41 80.5
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 3.2e-10 70.1 42 76.2
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 5.5e-10 69.3 181 42.5
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 5.5e-10 69.3 181 42.5
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 5.5e-10 69.3 181 42.5
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 5.5e-10 69.3 42 78.6
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 5.5e-10 69.3 43 79.1
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 9.3e-10 68.6 42 73.8
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 9.3e-10 68.6 42 73.8
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 1.2e-09 68.2 181 42.0
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 1.6e-09 67.8 43 72.1
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 2.1e-09 67.4 181 42.5
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 2.7e-09 67.0 181 42.0
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 2.7e-09 67.0 43 72.1
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 4.6e-09 66.2 181 42.5
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 4.6e-09 66.2 181 41.4
SalBow5G4668 Salvia bowleyana HOM05D006012 ORTHO05D007315 4.6e-09 66.2 53 62.3
ECA240G1168 Erigeron canadensis HOM05D006012 ORTHO05D007315 6.0e-09 65.9 42 71.4
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 6.0e-09 65.9 43 69.8
MSTRG.26253 Avicennia marina HOM05D006012 ORTHO05D007315 7.9e-09 65.5 34 85.3
MSTRG.26432 Avicennia marina HOM05D006012 ORTHO05D007315 7.9e-09 65.5 34 85.3
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 7.9e-09 65.5 43 69.8
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 7.9e-09 65.5 43 69.8
Cc05_g09920 Coffea canephora HOM05D006012 ORTHO05D007315 7.9e-09 65.5 36 80.6
Migut.K00294 Erythranthe guttata HOM05D006012 ORTHO05D007315 1.0e-08 65.1 44 70.5
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 1.8e-08 64.3 43 65.1
Dinv26631 Davidia involucrata HOM05D006012 ORTHO05D007315 1.8e-08 64.3 34 82.4
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 1.8e-08 64.3 41 73.2
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 2.3e-08 63.9 43 69.8
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 3.0e-08 63.5 42 71.4
Lj8C140T21 Lonicera japonica HOM05D006012 ORTHO05D007315 3.0e-08 63.5 43 67.4
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 3.0e-08 63.5 44 68.2
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 3.9e-08 63.2 181 42.0
HanXRQChr09g0257481 Helianthus annuus HOM05D006012 ORTHO05D007315 3.9e-08 63.2 34 82.4
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 5.1e-08 62.8 41 68.3
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 6.7e-08 62.4 43 62.8
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 8.7e-08 62.0 81 40.7
Nitab4.5_0000505g0060 Nicotiana tabacum HOM05D006012 ORTHO05D007315 8.7e-08 62.0 59 55.9
Nitab4.5_0000639g0250 Nicotiana tabacum HOM05D006012 ORTHO05D007315 8.7e-08 62.0 59 55.9
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 8.7e-08 62.0 43 72.1
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 1.1e-07 61.6 42 69.0
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 1.1e-07 61.6 37 73.0
Peaxi162Scf00000g06018 Petunia axillaris HOM05D006012 ORTHO05D007315 1.1e-07 61.6 53 56.6
vmacro09453 Vaccinium macrocarpon HOM05D006012 ORTHO05D007315 1.1e-07 61.6 116 41.4
BcaC01g04641 Brassica carinata HOM05D006012 ORTHO05D007315 1.5e-07 61.2 38 71.1
GSVIVG01015570001 Vitis vinifera HOM05D006012 ORTHO05D007315 1.5e-07 61.2 34 79.4
HanXRQChr13g0397181 Helianthus annuus HOM05D006012 ORTHO05D007315 1.9e-07 60.8 34 79.4
Actinidia35189 Actinidia chinensis HOM05D006012 ORTHO05D007315 2.5e-07 60.5 34 76.5
CSS0007923 Camellia sinensis var. sinensis HOM05D006012 ORTHO05D007315 2.5e-07 60.5 34 76.5
CSS0032241 Camellia sinensis var. sinensis HOM05D006012 ORTHO05D007315 2.5e-07 60.5 34 76.5
Thhalv10028718m.g Eutrema salsugineum HOM05D006012 ORTHO05D007315 3.3e-07 60.1 42 64.3
Oeu009873.3 Olea europaea HOM05D006012 ORTHO05D007315 3.3e-07 60.1 34 76.5
DCAR_021073 Daucus carota HOM05D006012 ORTHO05D007315 4.3e-07 59.7 35 77.1
Gohir.A07G162400 Gossypium hirsutum HOM05D006012 ORTHO05D007315 4.3e-07 59.7 34 70.6
Gohir.D07G169000 Gossypium hirsutum HOM05D006012 ORTHO05D007315 4.3e-07 59.7 34 70.6
Gorai.N000600 Gossypium raimondii HOM05D006012 ORTHO05D007315 4.3e-07 59.7 34 70.6
Psat1g052160 Pisum sativum HOM05D006012 ORTHO05D007315 4.3e-07 59.7 35 74.3
Lsat_1_v5_gn_9_103320 Lactuca sativa HOM05D006012 ORTHO05D007315 5.7e-07 59.3 34 79.4
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 5.7e-07 59.3 41 65.9
Sp6g06290 Schrenkiella parvula HOM05D006012 ORTHO05D007315 5.7e-07 59.3 41 63.4
Solyc12g011270.2 Solanum lycopersicum HOM05D006012 ORTHO05D007315 5.7e-07 59.3 57 56.1
Sopen12g006600 Solanum pennellii HOM05D006012 ORTHO05D007315 5.7e-07 59.3 57 56.1
PGSC0003DMG402007845 Solanum tuberosum HOM05D006012 ORTHO05D007315 5.7e-07 59.3 57 56.1
CARHR255460 Cardamine hirsuta HOM05D006012 ORTHO05D007315 7.4e-07 58.9 41 63.4
Cpa.g.sc8.4 Carica papaya HOM05D006012 ORTHO05D007315 9.6e-07 58.5 41 65.9
COL.COLO4_24667 Corchorus olitorius HOM05D006012 ORTHO05D007315 9.6e-07 58.5 34 73.5
RcHm_v2.0_Chr5g0052201 Rosa chinensis HOM05D006012 ORTHO05D007315 9.6e-07 58.5 34 73.5
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 1.3e-06 58.2 45 68.9
Thecc.01G203100 Theobroma cacao HOM05D006012 ORTHO05D007315 1.3e-06 58.2 34 73.5
AL6G45290 Arabidopsis lyrata HOM05D006012 ORTHO05D007315 2.1e-06 57.4 42 59.5
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 2.1e-06 57.4 181 40.9
AT4G11120 Arabidopsis thaliana HOM05D006012 ORTHO05D007315 2.1e-06 57.4 41 61.0
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 2.1e-06 57.4 82 37.8
BcaC04g21109 Brassica carinata HOM05D006012 ORTHO05D007315 2.1e-06 57.4 41 63.4
A09p28100 Brassica napus HOM05D006012 ORTHO05D007315 2.1e-06 57.4 41 63.4
C09p35600 Brassica napus HOM05D006012 ORTHO05D007315 2.1e-06 57.4 41 63.4
BraA09t38374Z Brassica rapa HOM05D006012 ORTHO05D007315 2.1e-06 57.4 41 63.4
PGR044G1532 Punica granatum HOM05D006012 ORTHO05D007315 2.1e-06 57.4 34 70.6
Duzib211G0637 Durio zibethinus HOM05D006012 ORTHO05D007315 2.8e-06 57.0 34 70.6
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 3.7e-06 56.6 40 70.0
Haze_14200 Corylus avellana HOM05D006012 ORTHO05D007315 3.7e-06 56.6 34 73.5
Eucgr.K01363 Eucalyptus grandis HOM05D006012 ORTHO05D007315 3.7e-06 56.6 34 73.5
Oeu006134.1 Olea europaea HOM05D006012 ORTHO05D007315 3.7e-06 56.6 43 60.5
Aa31LG5G18160 Aethionema arabicum HOM05D006012 ORTHO05D007315 4.8e-06 56.2 41 63.4
BcaB01g01588 Brassica carinata HOM05D006012 ORTHO05D007315 4.8e-06 56.2 116 33.6
BolC3t15847H Brassica oleracea HOM05D006012 ORTHO05D007315 4.8e-06 56.2 34 70.6
Carub.0006s2994 Capsella rubella HOM05D006012 ORTHO05D007315 4.8e-06 56.2 41 58.5
AUR62036845 Chenopodium quinoa HOM05D006012 ORTHO05D007315 4.8e-06 56.2 41 61.0
AUR62040810 Chenopodium quinoa HOM05D006012 ORTHO05D007315 4.8e-06 56.2 41 61.0
FAN04G1133 Fragaria x ananassa HOM05D006012 ORTHO05D007315 4.8e-06 56.2 42 57.1
Nn1g07641 Nelumbo nucifera HOM05D006012 ORTHO05D007315 4.8e-06 56.2 33 75.8
THA.LOC104819018 Tarenaya hassleriana HOM05D006012 ORTHO05D007315 4.8e-06 56.2 41 61.0
PSO063G6058 Papaver somniferum HOM05D006012 ORTHO05D007315 6.2e-06 55.8 42 59.5
QL02p049241 Quercus lobata HOM05D006012 ORTHO05D007315 6.2e-06 55.8 34 70.6
QL02p049408 Quercus lobata HOM05D006012 ORTHO05D007315 6.2e-06 55.8 34 70.6
TAR629G0946 Trochodendron aralioides HOM05D006012 ORTHO05D007315 6.2e-06 55.8 34 73.5
Atru.chr1.951 Acer truncatum HOM05D006012 ORTHO05D007315 8.2e-06 55.5 34 70.6
A03p29140 Brassica napus HOM05D006012 ORTHO05D007315 8.2e-06 55.5 41 58.5
BraA03t12108Z Brassica rapa HOM05D006012 ORTHO05D007315 8.2e-06 55.5 41 58.5
Cfa003712 Carpinus fangiana HOM05D006232 ORTHO05D007746 8.2e-06 55.5 126 32.5
CDE05G0700 Ceratophyllum demersum HOM05D006012 ORTHO05D007315 8.2e-06 55.5 36 66.7
Ciclev10020467m.g Citrus clementina HOM05D006012 ORTHO05D007315 8.2e-06 55.5 34 73.5
MD09G1258600 Malus domestica HOM05D006012 ORTHO05D007315 8.2e-06 55.5 34 70.6
Potri.014G172300 Populus trichocarpa HOM05D006012 ORTHO05D007315 8.2e-06 55.5 34 67.6
TWI18G0871 Tripterygium wilfordii HOM05D006012 ORTHO05D007315 8.2e-06 55.5 34 67.6


User provided reference genes

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