Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold404G51008 Striga asiatica HOM05D004397 ORTHO05D005271 2.2e-137 492.3 240 100.0
SGA_v2.0_scaffold543G52819 Striga asiatica HOM05D004397 ORTHO05D005271 6.3e-97 357.8 297 68.4
MSTRG.1068 Avicennia marina HOM05D004397 ORTHO05D005271 2.3e-62 243.0 308 50.0
vmacro09207 Vaccinium macrocarpon HOM05D004397 ORTHO05D005271 8.4e-57 224.6 248 52.8
Peaxi162Scf01073g00117 Petunia axillaris HOM05D004397 ORTHO05D005271 2.7e-55 219.5 235 55.3
Manes.16G003100 Manihot esculenta HOM05D004397 ORTHO05D005271 4.6e-55 218.8 310 46.5
Lj4A769T44 Lonicera japonica HOM05D004397 ORTHO05D005271 3.0e-54 216.1 277 48.0
Dinv12378 Davidia involucrata HOM05D004397 ORTHO05D005271 5.1e-54 215.3 313 45.7
Nn1g07269 Nelumbo nucifera HOM05D004397 ORTHO05D005271 1.1e-53 214.2 310 45.2
Duzib192G0217 Durio zibethinus HOM05D004397 ORTHO05D005271 1.9e-53 213.4 326 45.7
Gohir.A05G173000 Gossypium hirsutum HOM05D004397 ORTHO05D005271 3.3e-53 212.6 313 46.3
Phvul.010G046600 Phaseolus vulgaris HOM05D004397 ORTHO05D005271 3.3e-53 212.6 310 46.1
unitig_37.g12949 Utricularia gibba HOM05D004397 ORTHO05D005271 3.3e-53 212.6 240 52.5
CSS0021903 Camellia sinensis var. sinensis HOM05D004397 ORTHO05D005271 1.3e-52 210.7 310 47.1
CSS0044102 Camellia sinensis var. sinensis HOM05D004397 ORTHO05D005271 1.3e-52 210.7 310 47.1
Thecc.06G227900 Theobroma cacao HOM05D004397 ORTHO05D005271 1.6e-52 210.3 312 45.2
Ca_00691_v3 Cicer arietinum L. HOM05D004397 ORTHO05D005271 2.1e-52 209.9 311 44.4
Migut.N02747 Erythranthe guttata HOM05D004397 ORTHO05D005271 2.1e-52 209.9 313 45.4
TAR626G0623 Trochodendron aralioides HOM05D004397 ORTHO05D005271 2.1e-52 209.9 308 46.1
GSVIVG01004810001 Vitis vinifera HOM05D004397 ORTHO05D005271 4.8e-52 208.8 311 46.0
Migut.L00082 Erythranthe guttata HOM05D004397 ORTHO05D005271 6.2e-52 208.4 316 44.3
PGSC0003DMG400015407 Solanum tuberosum HOM05D004397 ORTHO05D005271 6.2e-52 208.4 252 50.4
COL.COLO4_31830 Corchorus olitorius HOM05D004397 ORTHO05D005271 8.1e-52 208.0 312 45.5
Solyc12g088730.2 Solanum lycopersicum HOM05D004397 ORTHO05D005271 8.1e-52 208.0 248 50.8
arahy.Tifrunner.gnm1.ann1.K9NX2S Arachis hypogaea HOM05D004397 ORTHO05D005271 1.1e-51 207.6 306 45.1
Gorai.009G181400 Gossypium raimondii HOM05D004397 ORTHO05D005271 1.1e-51 207.6 311 46.0
Nitab4.5_0003508g0010 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.1e-51 207.6 326 44.8
CiPaw.10G074300 Carya illinoinensis HOM05D004397 ORTHO05D005271 1.8e-51 206.8 317 46.4
Gohir.D05G176000 Gossypium hirsutum HOM05D004397 ORTHO05D005271 1.8e-51 206.8 311 46.0
Hma1.2p1_0226F.1_g095780 Hydrangea macrophylla HOM05D004397 ORTHO05D005271 1.8e-51 206.8 246 50.4
PSO782G1961 Papaver somniferum HOM05D004397 ORTHO05D005271 1.8e-51 206.8 316 44.3
Potri.004G004800 Populus trichocarpa HOM05D004397 ORTHO05D005271 1.8e-51 206.8 322 45.0
CiPaw.09G097700 Carya illinoinensis HOM05D004397 ORTHO05D005271 2.4e-51 206.5 237 52.3
Sopen12g030630 Solanum pennellii HOM05D004397 ORTHO05D005271 2.4e-51 206.5 248 50.8
MBI05_g10534_MAGBIO Magnolia biondii HOM05D004397 ORTHO05D005271 3.1e-51 206.1 181 62.4
TAR629G1518 Trochodendron aralioides HOM05D004397 ORTHO05D005271 4.0e-51 205.7 317 44.8
QL03p004896 Quercus lobata HOM05D004397 ORTHO05D005271 1.2e-50 204.1 238 51.7
Haze_06856 Corylus avellana HOM05D004397 ORTHO05D005271 1.5e-50 203.8 282 47.9
FvH4_3g01410 Fragaria vesca HOM05D004397 ORTHO05D005271 1.5e-50 203.8 308 45.5
Eucgr.G00454 Eucalyptus grandis HOM05D004397 ORTHO05D005271 3.4e-50 202.6 274 48.2
Cpa.g.sc152.55 Carica papaya HOM05D004397 ORTHO05D005271 5.8e-50 201.8 323 43.7
PSO063G2973 Papaver somniferum HOM05D004397 ORTHO05D005271 5.8e-50 201.8 316 43.4
Sc16g0006660 Simmondsia chinensis HOM05D004397 ORTHO05D005271 5.8e-50 201.8 300 44.7
Thhalv10002043m.g Eutrema salsugineum HOM05D004397 ORTHO05D005271 7.6e-50 201.4 245 49.8
RcHm_v2.0_Chr5g0002131 Rosa chinensis HOM05D004397 ORTHO05D005271 7.6e-50 201.4 308 45.5
HanXRQChr01g0014371 Helianthus annuus HOM05D004397 ORTHO05D005271 2.2e-49 199.9 266 48.5
Sabra04G0002500 Salix brachista HOM05D004397 ORTHO05D005271 2.9e-49 199.5 358 42.7
Phvul.006G146000 Phaseolus vulgaris HOM05D004397 ORTHO05D005271 3.8e-49 199.1 312 43.3
Sed0027185 Sechium edule HOM05D004397 ORTHO05D005271 3.8e-49 199.1 315 43.5
Hund00398 Selenicereus undatus HOM05D004397 ORTHO05D005271 4.9e-49 198.7 270 46.7
TPR.G34683 Trifolium pratense HOM05D004397 ORTHO05D005271 4.9e-49 198.7 310 44.5
Atru.chr10.2278 Acer truncatum HOM05D004397 ORTHO05D005271 6.4e-49 198.4 308 45.1
Lj6g0022899 Lotus japonicus HOM05D004397 ORTHO05D005271 6.4e-49 198.4 316 45.3
TWI38G0690 Tripterygium wilfordii HOM05D004397 ORTHO05D005271 8.4e-49 198.0 238 50.0
Sed0005973 Sechium edule HOM05D004397 ORTHO05D005271 1.1e-48 197.6 310 44.2
VMungo0540G2306 Vigna mungo HOM05D004397 ORTHO05D005271 1.4e-48 197.2 313 44.1
Carub.0003s3434 Capsella rubella HOM05D004397 ORTHO05D005271 1.9e-48 196.8 239 49.8
CsaV3_6G048740 Cucumis sativus L. HOM05D004397 ORTHO05D005271 2.4e-48 196.4 317 43.5
Ah.08g214470 Amaranthus hybridus HOM05D004397 ORTHO05D005271 3.2e-48 196.1 236 49.2
PGR004G1068 Punica granatum HOM05D004397 ORTHO05D005271 3.2e-48 196.1 303 44.6
Sp3g33370 Schrenkiella parvula HOM05D004397 ORTHO05D005271 4.2e-48 195.7 309 42.7
ClCG01G021700 Citrullus lanatus HOM05D004397 ORTHO05D005271 7.1e-48 194.9 328 41.5
Aa31LG8G17020 Aethionema arabicum HOM05D004397 ORTHO05D005271 9.3e-48 194.5 237 49.4
CDE06G0724 Ceratophyllum demersum HOM05D004397 ORTHO05D005271 9.3e-48 194.5 247 49.0
EL10Ac7g17869 Beta vulgaris HOM05D004397 ORTHO05D005271 1.2e-47 194.1 236 48.3
ECA236G1813 Erigeron canadensis HOM05D004397 ORTHO05D005271 1.2e-47 194.1 310 44.8
CDE03G0208 Ceratophyllum demersum HOM05D004397 ORTHO05D005271 2.7e-47 193.0 314 44.3
Psat5g077520 Pisum sativum HOM05D004397 ORTHO05D005271 2.7e-47 193.0 311 43.4
A09p59050 Brassica napus HOM05D004397 ORTHO05D005271 3.5e-47 192.6 199 54.8
BraA09t41289Z Brassica rapa HOM05D004397 ORTHO05D005271 3.5e-47 192.6 199 54.8
A07p00590 Brassica napus HOM05D004397 ORTHO05D005271 6.0e-47 191.8 307 43.0
BraA07t27855Z Brassica rapa HOM05D004397 ORTHO05D005271 6.0e-47 191.8 307 43.0
MBI05_g23392_MAGBIO Magnolia biondii HOM05D004397 ORTHO05D005271 7.9e-47 191.4 210 53.3
FAN21G0257 Fragaria x ananassa HOM05D004397 ORTHO05D005271 1.0e-46 191.0 324 42.3
Medtr3g107920 Medicago truncatula HOM05D004397 ORTHO05D005271 1.0e-46 191.0 199 53.8
Aqoxy1G03506 Aquilegia oxysepala HOM05D004397 ORTHO05D005271 1.3e-46 190.7 234 49.1
C08p42330 Brassica napus HOM05D004397 ORTHO05D005271 1.3e-46 190.7 199 54.3
FAN25G3034 Fragaria x ananassa HOM05D004397 ORTHO05D005271 1.3e-46 190.7 323 42.1
THA.LOC104809478 Tarenaya hassleriana HOM05D004397 ORTHO05D005271 1.3e-46 190.7 313 43.1
THA.LOC104823539 Tarenaya hassleriana HOM05D004397 ORTHO05D005271 1.3e-46 190.7 308 42.2
BcaB08g34896 Brassica carinata HOM05D004397 ORTHO05D005271 1.8e-46 190.3 305 42.3
CARHR110570 Cardamine hirsuta HOM05D004397 ORTHO05D005271 1.8e-46 190.3 199 54.8
BcaC07g41228 Brassica carinata HOM05D004397 ORTHO05D005271 2.3e-46 189.9 199 54.3
Lsat_1_v5_gn_4_51441 Lactuca sativa HOM05D004397 ORTHO05D005271 2.3e-46 189.9 242 49.6
BcaC06g36686 Brassica carinata HOM05D004397 ORTHO05D005271 3.0e-46 189.5 199 54.3
C07p01050 Brassica napus HOM05D004397 ORTHO05D005271 3.0e-46 189.5 199 54.3
BolC7t40544H Brassica oleracea HOM05D004397 ORTHO05D005271 3.0e-46 189.5 199 54.3
BolC8t51793H Brassica oleracea HOM05D004397 ORTHO05D005271 3.0e-46 189.5 303 42.6
Gohir.A06G150933 Gossypium hirsutum HOM05D004397 ORTHO05D005271 3.0e-46 189.5 184 58.7
AT2G20060 Arabidopsis thaliana HOM05D004397 ORTHO05D005271 5.1e-46 188.7 199 53.8
ATR0307G084 Amborella trichopoda HOM05D004397 ORTHO05D005271 6.7e-46 188.3 242 49.6
AL3G48030 Arabidopsis lyrata HOM05D004397 ORTHO05D005271 6.7e-46 188.3 199 53.8
Prupe.2G035900 Prunus persica HOM05D004397 ORTHO05D005271 6.7e-46 188.3 311 43.1
Glyma.09G007300 Glycine max HOM05D004397 ORTHO05D005271 1.9e-45 186.8 242 48.3
Glyma.15G111700 Glycine max HOM05D004397 ORTHO05D005271 1.9e-45 186.8 313 42.5
TWI63G0777 Tripterygium wilfordii HOM05D004397 ORTHO05D005271 3.3e-45 186.0 311 42.1
SHI04147 Sapria himalayana HOM05D004397 ORTHO05D005271 1.3e-44 184.1 181 55.8
AUR62008935 Chenopodium quinoa HOM05D004397 ORTHO05D005271 6.2e-44 181.8 247 44.9
Zm00001eb061360 Zea mays HOM05D004397 ORTHO05D005271 6.2e-44 181.8 239 46.9
Os11g0585700 Oryza sativa ssp. japonica HOM05D004397 ORTHO05D005271 1.4e-43 180.6 199 52.3
Nitab4.5_0002335g0060 Nicotiana tabacum HOM05D004397 ORTHO05D005271 3.1e-43 179.5 303 42.6
Rhsim04G0075400 Rhododendron simsii HOM05D004397 ORTHO05D005271 3.1e-43 179.5 271 42.8
HPP92_018530 Vanilla planifolia HOM05D004397 ORTHO05D005271 1.2e-42 177.6 199 51.8
Peaxi162Scf01027g00012 Petunia axillaris HOM05D004397 ORTHO05D005271 2.0e-42 176.8 247 45.3
Actinidia22115 Actinidia chinensis HOM05D004397 ORTHO05D005271 4.9e-41 172.2 183 55.7
BcaB03g16800 Brassica carinata HOM05D004397 ORTHO05D005271 4.9e-41 172.2 189 52.9
MELO3C007416.2 Cucumis melo HOM05D004397 ORTHO05D005271 4.2e-40 169.1 256 42.2
MD05G1352400 Malus domestica HOM05D004397 ORTHO05D005271 4.2e-40 169.1 348 39.9
Oeu012435.1 Olea europaea HOM05D004397 ORTHO05D005271 6.0e-39 165.2 190 51.6
AUR62001111 Chenopodium quinoa HOM05D004397 ORTHO05D005271 1.0e-38 164.5 231 44.6
Oeu023826.3 Olea europaea HOM05D004397 ORTHO05D005271 3.0e-38 162.9 303 40.3
CAN.G1194.11 Capsicum annuum HOM05D004397 ORTHO05D005271 1.6e-36 157.1 183 54.1
MD10G1326400 Malus domestica HOM05D004397 ORTHO05D005271 1.2e-34 151.0 377 35.8
Gorai.010G183700 Gossypium raimondii HOM05D004397 ORTHO05D005271 1.9e-32 143.7 169 52.1
Nitab4.5_0002335g0080 Nicotiana tabacum HOM05D004397 ORTHO05D005271 3.2e-32 142.9 203 45.3
Nitab4.5_0004376g0020 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.0e-30 137.9 146 55.5
Migut.O00819 Erythranthe guttata HOM05D004397 ORTHO05D005271 5.1e-30 135.6 168 48.2
SalBow7G0488 Salvia bowleyana HOM05D004397 ORTHO05D005271 5.1e-30 135.6 78 82.1
arahy.Tifrunner.gnm1.ann1.8Y4J32 Arachis hypogaea HOM05D004397 ORTHO05D005271 4.1e-27 125.9 78 75.6
Mapoly0162s0019 Marchantia polymorpha HOM05D004397 ORTHO05D005271 5.3e-27 125.6 197 42.1
Lalb_Chr20g0118931 Lupinus albus HOM05D004397 ORTHO05D005271 1.2e-26 124.4 78 75.6
Cc10_g04660 Coffea canephora HOM05D004397 ORTHO05D005271 1.5e-26 124.0 77 80.5
Pp3c13_15330 Physcomitrium patens HOM05D004397 ORTHO05D005271 8.5e-25 118.2 197 40.1
SalBow7G1927 Salvia bowleyana HOM05D004397 ORTHO05D005271 1.1e-24 117.9 173 45.7
Gohir.D06G157201 Gossypium hirsutum HOM05D004397 ORTHO05D005271 1.4e-24 117.5 153 48.4
AagrBONN_evm.TU.Sc2ySwM_228.2975 Anthoceros agrestis HOM05D004397 ORTHO05D005271 1.2e-23 114.4 200 39.5
CBR_g40797 Chara braunii HOM05D004397 ORTHO05D005271 7.9e-23 111.7 197 37.1
DCAR_019438 Daucus carota HOM05D004397 ORTHO05D005271 1.8e-22 110.5 107 57.9
Prupe.4G015300 Prunus persica HOM05D004397 ORTHO05D005271 2.3e-22 110.2 278 36.7
SMO116G0021 Selaginella moellendorffii HOM05D004397 ORTHO05D005271 3.0e-22 109.8 197 35.0
Cfa000163 Carpinus fangiana HOM05D004397 ORTHO05D005271 3.9e-22 109.4 131 54.2
RcHm_v2.0_Chr5g0078391 Rosa chinensis HOM05D004397 ORTHO05D005271 5.1e-22 109.0 227 37.0
DCAR_002834 Daucus carota HOM05D004397 ORTHO05D005271 8.7e-22 108.2 104 57.7
QL05p071977 Quercus lobata HOM05D004397 ORTHO05D005271 2.2e-20 103.6 101 56.4
Lalb_Chr20g0118941 Lupinus albus HOM05D004397 ORTHO05D005271 2.6e-18 96.7 182 41.8
Nitab4.5_0014148g0010 Nicotiana tabacum HOM05D004397 ORTHO05D005271 7.7e-18 95.1 53 83.0
MSTRG.25075 Avicennia marina HOM05D004397 ORTHO05D005271 1.0e-17 94.7 62 77.4
Cc10_g04670 Coffea canephora HOM05D004397 ORTHO05D005271 1.3e-17 94.4 104 53.8
Nitab4.5_0000678g0090 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.3e-17 94.4 51 82.4
Nitab4.5_0006802g0080 Nicotiana tabacum HOM05D004397 ORTHO05D005271 6.5e-17 92.0 51 82.4
Nitab4.5_0003501g0040 Nicotiana tabacum HOM05D004397 ORTHO05D005271 8.5e-17 91.7 51 84.3
FAN21G3530 Fragaria x ananassa HOM05D004397 ORTHO05D005271 5.5e-16 89.0 183 35.5
BcaB03g16804 Brassica carinata HOM05D004397 ORTHO05D005271 2.1e-15 87.0 54 77.8
Nitab4.5_0003603g0020 Nicotiana tabacum HOM05D004397 ORTHO05D005271 2.1e-15 87.0 51 80.4
FvH4_3g43720 Fragaria vesca HOM05D004397 ORTHO05D005271 1.4e-14 84.3 182 34.6
Nitab4.5_0006174g0030 Nicotiana tabacum HOM05D004397 ORTHO05D005271 9.1e-11 71.6 40 85.0
Aa31LG4G11630 Aethionema arabicum HOM05D008081 ORTHO05D010223 5.9e-10 68.9 118 44.1
Lsat_1_v5_gn_7_66500 Lactuca sativa HOM05D004397 ORTHO05D005271 5.0e-09 65.9 71 50.7
BcaB06g28897 Brassica carinata HOM05D004397 ORTHO05D005271 6.5e-09 65.5 127 37.8
Nitab4.5_0003290g0070 Nicotiana tabacum HOM05D004397 ORTHO05D005271 4.2e-08 62.8 38 73.7


User provided reference genes

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