Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold401G50974 Striga asiatica HOM05D002233 ORTHO05D403241 2.5e-217 758.4 373 100.0
SGA_v2.0_scaffold401G50973 Striga asiatica HOM05D002233 ORTHO05D002299 4.0e-13 80.1 62 66.1
Oeu000171.6 Olea europaea HOM05D007843 ORTHO05D003639 1.4e-10 71.6 41 80.5
Hma1.2p1_0157F.1_g069370 Hydrangea macrophylla HOM05D002233 ORTHO05D002299 3.1e-10 70.5 62 59.7
MSTRG.27894 Avicennia marina HOM05D002233 ORTHO05D002299 5.4e-10 69.7 62 58.1
Dinv30979 Davidia involucrata HOM05D002233 ORTHO05D002299 1.6e-09 68.2 62 59.7
Lj5A309T26 Lonicera japonica HOM05D002233 ORTHO05D002299 2.7e-09 67.4 56 60.7
THA.LOC104801774 Tarenaya hassleriana HOM05D002233 ORTHO05D002299 4.5e-09 66.6 40 72.5
Cc02_g36760 Coffea canephora HOM05D002233 ORTHO05D002299 1.0e-08 65.5 56 55.4
Potri.004G232600 Populus trichocarpa HOM05D002233 ORTHO05D002299 2.9e-08 63.9 62 51.6
SalBow3G3421 Salvia bowleyana HOM05D002233 ORTHO05D002299 2.9e-08 63.9 52 59.6
Solyc01g102660.4 Solanum lycopersicum HOM05D002233 ORTHO05D002299 3.8e-08 63.5 62 54.8
Sopen01g045070 Solanum pennellii HOM05D002233 ORTHO05D002299 3.8e-08 63.5 62 54.8
PGSC0003DMG400018269 Solanum tuberosum HOM05D002233 ORTHO05D002299 3.8e-08 63.5 62 54.8
Thecc.10G124900 Theobroma cacao HOM05D002233 ORTHO05D002299 3.8e-08 63.5 53 58.5
Aa31LG2G7710 Aethionema arabicum HOM05D002233 ORTHO05D002299 5.0e-08 63.2 49 61.2
BcaB07g30340 Brassica carinata HOM05D002233 ORTHO05D002299 5.0e-08 63.2 40 72.5
Thhalv10004880m.g Eutrema salsugineum HOM05D002233 ORTHO05D002299 5.0e-08 63.2 40 75.0
PGR142G0425 Punica granatum HOM05D002233 ORTHO05D002299 5.0e-08 63.2 63 55.6
BcaC06g31235 Brassica carinata HOM05D002233 ORTHO05D002299 1.1e-07 62.0 40 67.5
Duzib138G1114 Durio zibethinus HOM05D002233 ORTHO05D002299 1.1e-07 62.0 40 72.5
Sp2g13660 Schrenkiella parvula HOM05D002233 ORTHO05D002299 1.1e-07 62.0 40 72.5
Manes.06G016600 Manihot esculenta HOM05D002233 ORTHO05D002299 1.9e-07 61.2 57 54.4
Atru.chr6.1245 Acer truncatum HOM05D002233 ORTHO05D002299 2.5e-07 60.8 58 55.2
Actinidia01648 Actinidia chinensis HOM05D002233 ORTHO05D002299 2.5e-07 60.8 52 59.6
CAN.G1379.24 Capsicum annuum HOM05D002233 ORTHO05D002299 2.5e-07 60.8 61 52.5
QL02p104178 Quercus lobata HOM05D002233 ORTHO05D002299 2.5e-07 60.8 56 58.9
unitig_8.g3612 Utricularia gibba HOM05D002233 ORTHO05D002299 2.5e-07 60.8 40 72.5
GSVIVG01023109001 Vitis vinifera HOM05D002233 ORTHO05D002299 2.5e-07 60.8 35 80.0
BraA06t27247Z Brassica rapa HOM05D002233 ORTHO05D002299 4.2e-07 60.1 39 69.2
Aa31LG2G7680 Aethionema arabicum HOM05D002233 ORTHO05D002299 5.5e-07 59.7 39 71.8
AT2G02390 Arabidopsis thaliana HOM05D002233 ORTHO05D002299 5.5e-07 59.7 40 75.0
A06p43650 Brassica napus HOM05D002233 ORTHO05D002299 5.5e-07 59.7 39 69.2
COL.COLO4_31202 Corchorus olitorius HOM05D002233 ORTHO05D002299 5.5e-07 59.7 55 54.5
Haze_09949 Corylus avellana HOM05D002233 ORTHO05D002299 5.5e-07 59.7 59 54.2
Lsat_1_v5_gn_9_81781 Lactuca sativa HOM05D002233 ORTHO05D002299 5.5e-07 59.7 62 53.2
Lj9C241G3 Lonicera japonica HOM05D002233 ORTHO05D002299 5.5e-07 59.7 56 55.4
Nitab4.5_0004176g0020 Nicotiana tabacum HOM05D002233 ORTHO05D002299 5.5e-07 59.7 56 53.6
SalBow3G4388 Salvia bowleyana HOM05D002233 ORTHO05D002299 5.5e-07 59.7 31 87.1
BcaC06g34055 Brassica carinata HOM05D002233 ORTHO05D002299 7.2e-07 59.3 40 72.5
C07p33210 Brassica napus HOM05D002233 ORTHO05D002299 7.2e-07 59.3 39 69.2
CANSAT01G0677 Cannabis sativa HOM05D002233 ORTHO05D002299 7.2e-07 59.3 62 53.2
DCAR_003265 Daucus carota HOM05D002233 ORTHO05D002299 7.2e-07 59.3 58 48.3
Duzib235G0539 Durio zibethinus HOM05D002233 ORTHO05D002299 7.2e-07 59.3 53 56.6
Sabra01G0178100 Salix brachista HOM05D002233 ORTHO05D002299 7.2e-07 59.3 40 75.0
arahy.Tifrunner.gnm1.ann1.ACQ7NG Arachis hypogaea HOM05D002233 ORTHO05D002299 9.5e-07 58.9 62 51.6
arahy.Tifrunner.gnm1.ann1.EDU7SQ Arachis hypogaea HOM05D002233 ORTHO05D002299 9.5e-07 58.9 62 51.6
Thhalv10004878m.g Eutrema salsugineum HOM05D002233 ORTHO05D002299 9.5e-07 58.9 40 65.0
MELO3C023224.2 Cucumis melo HOM05D002233 ORTHO05D002299 1.2e-06 58.5 54 57.4
CsaV3_2G019500 Cucumis sativus L. HOM05D002233 ORTHO05D002299 1.2e-06 58.5 54 57.4
Gohir.D10G083000 Gossypium hirsutum HOM05D002233 ORTHO05D002299 1.2e-06 58.5 56 53.6
Gorai.011G090100 Gossypium raimondii HOM05D002233 ORTHO05D002299 1.2e-06 58.5 56 53.6
Carub.0005s0144 Capsella rubella HOM05D002233 ORTHO05D002299 1.6e-06 58.2 40 72.5
Cc02_g36740 Coffea canephora HOM05D002233 ORTHO05D002299 2.1e-06 57.8 32 78.1
Nitab4.5_0001085g0020 Nicotiana tabacum HOM05D002233 ORTHO05D002299 2.1e-06 57.8 43 67.4
Gohir.A10G068200 Gossypium hirsutum HOM05D002233 ORTHO05D002299 2.8e-06 57.4 56 51.8
AL5G11620 Arabidopsis lyrata HOM05D002233 ORTHO05D002299 3.6e-06 57.0 45 64.4
BolC7t43832H Brassica oleracea HOM05D002233 ORTHO05D002299 3.6e-06 57.0 39 71.8
CARHR144970 Cardamine hirsuta HOM05D002233 ORTHO05D002299 3.6e-06 57.0 45 64.4
COL.COLO4_12547 Corchorus olitorius HOM05D002233 ORTHO05D002299 3.6e-06 57.0 38 71.1
Prupe.1G587700 Prunus persica HOM05D002233 ORTHO05D002299 3.6e-06 57.0 61 50.8
Thecc.01G376300 Theobroma cacao HOM05D002233 ORTHO05D002299 3.6e-06 57.0 38 71.1
Atru.chr6.44 Acer truncatum HOM05D002233 ORTHO05D002299 4.7e-06 56.6 39 71.8
Aa31LG2G7700 Aethionema arabicum HOM05D002233 ORTHO05D002299 4.7e-06 56.6 40 65.0
AUR62032505 Chenopodium quinoa HOM05D002233 ORTHO05D002299 4.7e-06 56.6 38 68.4
vmacro01636 Vaccinium macrocarpon HOM05D002233 ORTHO05D002299 4.7e-06 56.6 61 54.1
CANSAT01G3100 Cannabis sativa HOM05D002233 ORTHO05D002299 6.1e-06 56.2 62 46.8
CDE04G1228 Ceratophyllum demersum HOM05D002233 ORTHO05D002299 6.1e-06 56.2 35 74.3
Lj4g0015462 Lotus japonicus HOM05D002233 ORTHO05D002299 6.1e-06 56.2 57 49.1
QL02p104225 Quercus lobata HOM05D002233 ORTHO05D002299 6.1e-06 56.2 58 51.7
Rhsim11G0112100 Rhododendron simsii HOM05D002233 ORTHO05D002299 6.1e-06 56.2 58 55.2
TWI59G1044 Tripterygium wilfordii HOM05D002233 ORTHO05D002299 6.1e-06 56.2 37 64.9
BcaB07g30701 Brassica carinata HOM05D002233 ORTHO05D002299 8.0e-06 55.8 39 64.1
CiPaw.12G009500 Carya illinoinensis HOM05D002233 ORTHO05D002299 8.0e-06 55.8 62 50.0
Ciclev10002464m.g Citrus clementina HOM05D002233 ORTHO05D002299 8.0e-06 55.8 51 56.9
TWI23G0377 Tripterygium wilfordii HOM05D002233 ORTHO05D002299 8.0e-06 55.8 33 75.8


User provided reference genes

Program Settings