Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.8e-265 918.7 455 100.0
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 1.1e-147 527.3 464 60.1
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 1.0e-140 504.2 462 56.9
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.1e-129 467.6 469 53.9
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.2e-128 464.2 450 56.0
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.3e-127 460.7 471 53.1
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.9e-127 459.5 478 52.7
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 6.5e-127 458.4 476 54.4
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.5e-126 457.2 471 52.7
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 3.2e-126 456.1 475 52.0
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 4.2e-126 455.7 474 53.0
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 1.0e-124 451.1 524 48.9
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 9.8e-123 444.5 482 50.8
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 7.0e-121 438.3 486 50.6
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 7.2e-118 428.3 476 49.4
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 3.6e-117 426.0 450 52.4
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.2e-115 421.0 478 48.7
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 1.8e-113 413.7 449 51.0
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 2.4e-113 413.3 474 48.5
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.4e-113 413.3 482 49.2
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 2.7e-112 409.8 431 52.0
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 2.9e-111 406.4 449 50.1
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.8e-111 406.0 454 49.8
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 6.6e-111 405.2 452 51.3
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 8.6e-111 404.8 461 49.7
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 1.9e-110 403.7 445 49.9
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.1e-109 400.2 445 49.9
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 2.1e-109 400.2 445 49.9
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 1.0e-108 397.9 482 47.9
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 1.8e-108 397.1 478 47.5
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.5e-107 394.0 466 47.4
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.7e-106 390.6 479 46.8
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 7.8e-104 381.7 444 49.8
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.7e-103 380.6 456 45.6
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.7e-103 380.6 435 50.8
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 5.0e-103 379.0 457 45.7
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 5.0e-103 379.0 462 48.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 5.0e-103 379.0 485 47.4
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.1e-102 377.9 444 46.2
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 2.8e-101 373.2 457 46.0
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 8.0e-101 371.7 449 47.4
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 1.1e-100 371.3 412 52.4
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 2.3e-100 370.2 481 47.4
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 4.0e-100 369.4 443 47.9
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 1.2e-99 367.9 431 50.1
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.0e-99 367.1 443 46.7
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 4.4e-99 365.9 465 47.7
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 9.8e-99 364.8 429 48.7
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.1e-97 361.3 441 47.6
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.9e-97 360.5 470 47.9
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.2e-96 357.8 405 50.1
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 1.6e-93 347.4 504 42.1
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 1.5e-86 324.3 459 42.9
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 9.5e-86 321.6 392 47.7
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 3.1e-84 316.6 436 42.7
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 4.6e-80 302.8 421 41.1
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 3.0e-79 300.1 426 41.5
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 5.6e-78 295.8 461 40.6
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 9.6e-78 295.0 385 46.0
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 7.6e-75 285.4 423 42.1
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 1.1e-73 281.6 421 39.9
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 3.2e-73 280.0 448 37.1
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.6e-69 267.7 425 38.8
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.1e-69 267.3 428 38.1
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 9.9e-67 258.5 440 37.3
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 3.8e-66 256.5 407 36.1
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 3.8e-66 256.5 409 36.2
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 3.8e-66 256.5 409 36.2
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 6.4e-66 255.8 406 36.2
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 8.4e-66 255.4 433 37.2
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 8.4e-66 255.4 427 35.1
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 1.1e-65 255.0 409 35.9
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 1.4e-65 254.6 409 35.9
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 2.4e-65 253.8 431 38.1
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 2.1e-64 250.8 409 35.2
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 3.5e-64 250.0 337 46.0
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.3e-63 248.1 419 35.3
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.0e-63 246.9 386 39.4
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 8.7e-63 245.4 416 34.9
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 4.8e-61 239.6 421 37.3
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 6.9e-60 235.7 422 36.0
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.5e-59 234.6 423 36.4
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.5e-59 234.6 423 35.5
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 5.8e-59 232.6 422 35.8
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 2.9e-58 230.3 414 35.3
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 6.4e-58 229.2 427 36.3
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 4.2e-57 226.5 464 34.1
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 7.9e-56 222.2 346 38.7
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 8.7e-55 218.8 379 37.7
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 1.5e-54 218.0 337 40.7
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 3.7e-53 213.4 416 33.2
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 6.2e-53 212.6 328 38.4
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 2.4e-52 210.7 417 33.6
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 9.0e-52 208.8 362 37.8
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 5.8e-51 206.1 373 34.6
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.0e-50 205.3 336 37.5
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.2e-50 204.1 218 47.7
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 2.2e-50 204.1 346 36.4
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 2.9e-50 203.8 345 37.7
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 8.4e-50 202.2 432 33.8
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 7.1e-49 199.1 323 37.2
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 2.3e-47 194.1 432 29.9
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.0e-47 193.7 301 38.5
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 1.1e-46 191.8 355 34.1
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 1.5e-46 191.4 352 34.9
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.9e-46 191.0 352 34.9
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.3e-45 188.3 403 31.0
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 2.2e-45 187.6 346 33.5
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 2.2e-45 187.6 365 33.7
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 7.2e-41 172.6 356 32.9
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 1.2e-40 171.8 417 33.6
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 4.6e-40 169.9 211 46.0
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.0e-39 168.7 160 51.9
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.8e-39 167.9 337 33.5
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 2.3e-39 167.5 266 37.6
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 6.7e-39 166.0 134 57.5
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.5e-38 164.1 337 32.9
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 9.7e-38 162.2 358 34.1
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 1.4e-36 158.3 263 35.0
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.4e-36 157.5 356 33.1
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 6.5e-34 149.4 164 44.5
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 1.4e-33 148.3 266 36.8
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 1.6e-32 144.8 280 34.3
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 1.6e-32 144.8 280 34.3
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 2.1e-32 144.4 147 49.0
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 4.7e-32 143.3 135 54.8
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 6.1e-32 142.9 147 48.3
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.3e-31 141.0 106 57.5
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 3.9e-31 140.2 266 34.6
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 6.7e-31 139.4 160 45.6
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 2.2e-29 134.4 223 40.8
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 2.8e-29 134.0 265 30.6
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 4.8e-29 133.3 389 28.3
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 9.1e-28 129.0 386 29.3
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.0e-26 125.6 158 42.4
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 8.8e-23 112.5 160 36.2
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 4.1e-20 103.6 124 41.1
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.6e-19 101.7 121 43.8
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 2.2e-18 97.8 85 54.1
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.0e-15 89.0 124 43.5
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 1.8e-15 88.2 162 31.5
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 5.2e-15 86.7 108 41.7
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 5.2e-15 86.7 105 40.0
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.3e-13 82.0 323 22.0
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 8.5e-10 69.3 75 50.7
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 3.2e-09 67.4 65 50.8
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 1.0e-07 62.4 43 65.1


User provided reference genes

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