Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 9.0e-209 729.9 350 100.0
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 2.5e-17 94.0 78 66.7
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 3.3e-17 93.6 117 51.3
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 3.3e-17 93.6 64 76.6
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 3.3e-17 93.6 64 76.6
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 3.3e-17 93.6 64 76.6
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 3.3e-17 93.6 64 76.6
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 3.3e-17 93.6 64 76.6
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 3.3e-17 93.6 64 76.6
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 3.3e-17 93.6 64 76.6
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 3.3e-17 93.6 64 76.6
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 3.3e-17 93.6 64 76.6
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 4.2e-17 93.2 61 78.7
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 7.2e-17 92.4 54 87.0
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 7.2e-17 92.4 54 87.0
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 7.2e-17 92.4 54 87.0
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 7.2e-17 92.4 54 87.0
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 7.2e-17 92.4 54 87.0
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 7.2e-17 92.4 54 87.0
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 7.2e-17 92.4 54 87.0
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 7.2e-17 92.4 54 87.0
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 7.2e-17 92.4 54 87.0
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 1.2e-16 91.7 78 64.1
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 1.6e-16 91.3 64 75.0
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 1.6e-16 91.3 64 75.0
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.6e-16 91.3 64 75.0
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.6e-16 91.3 67 70.1
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 2.1e-16 90.9 78 65.4
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 2.1e-16 90.9 78 65.4
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 2.8e-16 90.5 64 73.4
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 3.6e-16 90.1 54 85.2
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 1.0e-15 88.6 73 67.1
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.4e-15 88.2 54 83.3
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 1.4e-15 88.2 49 91.8
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 2.3e-15 87.4 49 91.8
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 2.3e-15 87.4 49 91.8
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 2.3e-15 87.4 49 91.8
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 2.3e-15 87.4 49 91.8
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 2.3e-15 87.4 73 67.1
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 2.3e-15 87.4 73 67.1
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 2.3e-15 87.4 49 91.8
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 3.0e-15 87.0 54 83.3
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 5.2e-15 86.3 46 97.8
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 5.2e-15 86.3 49 89.8
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 5.2e-15 86.3 49 89.8
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 5.2e-15 86.3 49 89.8
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 5.2e-15 86.3 49 89.8
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.2e-15 86.3 54 79.6
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 6.8e-15 85.9 73 65.8
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 8.9e-15 85.5 49 89.8
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 8.9e-15 85.5 49 89.8
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 8.9e-15 85.5 49 89.8
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 1.5e-14 84.7 44 100.0
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.0e-14 84.3 64 67.2
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 3.4e-14 83.6 48 89.6
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.4e-14 83.6 56 78.6
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 4.4e-14 83.2 64 67.2
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 5.7e-14 82.8 44 97.7
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 5.7e-14 82.8 49 87.8
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.7e-14 82.8 64 68.8
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 5.7e-14 82.8 50 86.0
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 7.5e-14 82.4 49 87.8
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.5e-14 82.4 75 66.7
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 7.5e-14 82.4 67 64.2
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 1.7e-13 81.3 45 95.6
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 2.8e-13 80.5 62 75.8
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 4.9e-13 79.7 54 75.9
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 4.9e-13 79.7 44 95.5
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 1.2e-11 75.1 53 71.7
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.0e-10 72.0 54 68.5
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 2.9e-10 70.5 54 75.9
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 2.8e-08 63.9 49 73.5


User provided reference genes

Program Settings