Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01748 Striga asiatica HOM05D003983 ORTHO05D004562 2.3e-93 345.5 170 100.0
SGA_v2.0_scaffold23G10117 Striga asiatica HOM05D003983 ORTHO05D004562 1.5e-36 156.8 167 55.7
Actinidia12430 Actinidia chinensis HOM05D003983 ORTHO05D004562 2.3e-32 142.9 163 52.8
CSS0004353 Camellia sinensis var. sinensis HOM05D003983 ORTHO05D004562 3.0e-32 142.5 117 64.1
SalBow5G2331 Salvia bowleyana HOM05D003983 ORTHO05D004562 6.6e-32 141.4 176 50.6
Migut.E00508 Erythranthe guttata HOM05D003983 ORTHO05D004562 1.5e-31 140.2 121 63.6
Dinv14372 Davidia involucrata HOM05D003983 ORTHO05D004562 2.5e-31 139.4 114 64.0
Nitab4.5_0002315g0030 Nicotiana tabacum HOM05D003983 ORTHO05D004562 3.3e-31 139.0 116 60.3
MSTRG.13642 Avicennia marina HOM05D003983 ORTHO05D004562 9.5e-31 137.5 126 58.7
Solyc12g010180.2 Solanum lycopersicum HOM05D003983 ORTHO05D004562 9.5e-31 137.5 115 61.7
Sopen12g005050 Solanum pennellii HOM05D003983 ORTHO05D004562 9.5e-31 137.5 115 61.7
Dinv05685 Davidia involucrata HOM05D003983 ORTHO05D004562 1.2e-30 137.1 112 63.4
RcHm_v2.0_Chr3g0486721 Rosa chinensis HOM05D003983 ORTHO05D004562 1.2e-30 137.1 116 62.1
RcHm_v2.0_Chr3g0486701 Rosa chinensis HOM05D003983 ORTHO05D004562 1.6e-30 136.7 116 62.1
RcHm_v2.0_Chr4g0388431 Rosa chinensis HOM05D003983 ORTHO05D004562 1.6e-30 136.7 116 62.1
Prupe.1G337100 Prunus persica HOM05D003983 ORTHO05D004562 2.1e-30 136.3 115 64.3
Duzib248G0975 Durio zibethinus HOM05D003983 ORTHO05D004562 2.8e-30 136.0 109 66.1
Nn4g24498 Nelumbo nucifera HOM05D003983 ORTHO05D004562 2.8e-30 136.0 100 69.0
RcHm_v2.0_Chr4g0388381 Rosa chinensis HOM05D003983 ORTHO05D004562 2.8e-30 136.0 115 62.6
HanXRQChr08g0224861 Helianthus annuus HOM05D003983 ORTHO05D004562 4.7e-30 135.2 114 60.5
Hma1.2p1_0037F.1_g023780 Hydrangea macrophylla HOM05D003983 ORTHO05D004562 4.7e-30 135.2 116 62.1
MD13G1016400 Malus domestica HOM05D003983 ORTHO05D004562 4.7e-30 135.2 115 62.6
Manes.17G087200 Manihot esculenta HOM05D003983 ORTHO05D004562 4.7e-30 135.2 164 52.4
Duzib268G0992 Durio zibethinus HOM05D003983 ORTHO05D004562 8.1e-30 134.4 109 65.1
Oeu044076.2 Olea europaea HOM05D003983 ORTHO05D004562 8.1e-30 134.4 121 58.7
arahy.Tifrunner.gnm1.ann1.H0K2UA Arachis hypogaea HOM05D003983 ORTHO05D004562 1.1e-29 134.0 98 69.4
TAR629G3105 Trochodendron aralioides HOM05D003983 ORTHO05D004562 1.4e-29 133.7 98 68.4
CANSAT78G2066 Cannabis sativa HOM05D003983 ORTHO05D004562 1.8e-29 133.3 115 61.7
Cpa.g.sc2.136 Carica papaya HOM05D003983 ORTHO05D004562 1.8e-29 133.3 114 62.3
COL.COLO4_27591 Corchorus olitorius HOM05D003983 ORTHO05D004562 1.8e-29 133.3 137 54.7
Haze_10827 Corylus avellana HOM05D003983 ORTHO05D004562 1.8e-29 133.3 112 60.7
FvH4_4g33060 Fragaria vesca HOM05D003983 ORTHO05D004562 1.8e-29 133.3 103 65.0
FAN12G1558 Fragaria x ananassa HOM05D003983 ORTHO05D004562 1.8e-29 133.3 103 65.0
MD16G1013900 Malus domestica HOM05D003983 ORTHO05D004562 1.8e-29 133.3 115 64.3
Peaxi162Scf00062g00418 Petunia axillaris HOM05D003983 ORTHO05D004562 1.8e-29 133.3 118 60.2
Lalb_Chr07g0187831 Lupinus albus HOM05D003983 ORTHO05D004562 2.3e-29 132.9 140 54.3
Sed0000196 Sechium edule HOM05D003983 ORTHO05D004562 2.3e-29 132.9 101 64.4
Cfa015064 Carpinus fangiana HOM05D003983 ORTHO05D004562 3.1e-29 132.5 166 46.4
arahy.Tifrunner.gnm1.ann1.L1YRVI Arachis hypogaea HOM05D003983 ORTHO05D004562 4.0e-29 132.1 98 68.4
FAN22G1456 Fragaria x ananassa HOM05D003983 ORTHO05D004562 4.0e-29 132.1 103 64.1
Gohir.A12G154000 Gossypium hirsutum HOM05D003983 ORTHO05D004562 4.0e-29 132.1 160 51.2
Manes.15G137900 Manihot esculenta HOM05D003983 ORTHO05D004562 4.0e-29 132.1 114 64.0
Potri.008G138800 Populus trichocarpa HOM05D003983 ORTHO05D004562 4.0e-29 132.1 111 62.2
Glyma.16G058800 Glycine max HOM05D003983 ORTHO05D004562 5.2e-29 131.7 157 50.3
FAN07G1936 Fragaria x ananassa HOM05D003983 ORTHO05D004562 6.8e-29 131.3 103 64.1
Glyma.07G175000 Glycine max HOM05D003983 ORTHO05D004562 6.8e-29 131.3 100 68.0
Gohir.D12G157100 Gossypium hirsutum HOM05D003983 ORTHO05D004562 6.8e-29 131.3 154 51.3
Gorai.008G169900 Gossypium raimondii HOM05D003983 ORTHO05D004562 6.8e-29 131.3 154 51.3
Lj2g0017484 Lotus japonicus HOM05D003983 ORTHO05D004562 6.8e-29 131.3 111 63.1
Lalb_Chr12g0209351 Lupinus albus HOM05D003983 ORTHO05D004562 6.8e-29 131.3 102 66.7
Thecc.02G305000 Theobroma cacao HOM05D003983 ORTHO05D004562 6.8e-29 131.3 109 63.3
TWI74G1079 Tripterygium wilfordii HOM05D003983 ORTHO05D004562 6.8e-29 131.3 135 52.6
Carub.0001s2535 Capsella rubella HOM05D003983 ORTHO05D004562 8.9e-29 131.0 111 61.3
MELO3C018290.2 Cucumis melo HOM05D003983 ORTHO05D004562 8.9e-29 131.0 96 67.7
CsaV3_5G015330 Cucumis sativus L. HOM05D003983 ORTHO05D004562 8.9e-29 131.0 96 67.7
AL5G11470 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 1.2e-28 130.6 115 60.0
Ciclev10016176m.g Citrus clementina HOM05D003983 ORTHO05D004562 1.2e-28 130.6 121 57.9
PSO339G3678 Papaver somniferum HOM05D003983 ORTHO05D004562 1.2e-28 130.6 103 63.1
AT5G57890 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 1.5e-28 130.2 114 62.3
Ca_26339_v3 Cicer arietinum L. HOM05D003983 ORTHO05D004562 1.5e-28 130.2 98 67.3
Cc11_g05880 Coffea canephora HOM05D003983 ORTHO05D004562 1.5e-28 130.2 103 62.1
PSO356G0033 Papaver somniferum HOM05D003983 ORTHO05D004562 1.5e-28 130.2 92 70.7
PSO675G6890 Papaver somniferum HOM05D003983 ORTHO05D004562 1.5e-28 130.2 92 70.7
BcaB03g12041 Brassica carinata HOM05D003983 ORTHO05D004562 2.0e-28 129.8 110 60.9
BcaC01g01671 Brassica carinata HOM05D003983 ORTHO05D004562 2.0e-28 129.8 110 61.8
A08p26790 Brassica napus HOM05D003983 ORTHO05D004562 2.0e-28 129.8 110 61.8
C03p73170 Brassica napus HOM05D003983 ORTHO05D004562 2.0e-28 129.8 110 61.8
Cc00_g17040 Coffea canephora HOM05D003983 ORTHO05D004562 2.0e-28 129.8 103 62.1
Atru.chr11.745 Acer truncatum HOM05D003983 ORTHO05D004562 2.6e-28 129.4 98 66.3
Aqoxy3G04109 Aquilegia oxysepala HOM05D003983 ORTHO05D004562 2.6e-28 129.4 126 55.6
Sabra08G0105500 Salix brachista HOM05D003983 ORTHO05D004562 2.6e-28 129.4 104 63.5
GSVIVG01011602001 Vitis vinifera HOM05D003983 ORTHO05D004562 2.6e-28 129.4 115 60.9
Lsat_1_v5_gn_8_34800 Lactuca sativa HOM05D003983 ORTHO05D004562 3.4e-28 129.0 108 62.0
QL03p038834 Quercus lobata HOM05D003983 ORTHO05D004562 3.4e-28 129.0 102 63.7
QL03p038897 Quercus lobata HOM05D003983 ORTHO05D004562 3.4e-28 129.0 102 63.7
CDE05G1639 Ceratophyllum demersum HOM05D003983 ORTHO05D004562 4.4e-28 128.6 101 64.4
Thhalv10008447m.g Eutrema salsugineum HOM05D003983 ORTHO05D004562 4.4e-28 128.6 110 60.9
Psat6g095080 Pisum sativum HOM05D003983 ORTHO05D004562 4.4e-28 128.6 101 64.4
Potri.010G102200 Populus trichocarpa HOM05D003983 ORTHO05D004562 4.4e-28 128.6 111 61.3
VMungo1215G1104 Vigna mungo HOM05D003983 ORTHO05D004562 4.4e-28 128.6 118 60.2
BcaC05g26495 Brassica carinata HOM05D003983 ORTHO05D004562 5.8e-28 128.3 90 71.1
C05p25470 Brassica napus HOM05D003983 ORTHO05D004562 5.8e-28 128.3 90 71.1
Gohir.D02G137151 Gossypium hirsutum HOM05D003983 ORTHO05D004562 5.8e-28 128.3 96 67.7
Gorai.005G153300 Gossypium raimondii HOM05D003983 ORTHO05D004562 5.8e-28 128.3 96 67.7
Lj6A732T67 Lonicera japonica HOM05D003983 ORTHO05D004562 5.8e-28 128.3 113 56.6
ECA246G0293 Erigeron canadensis HOM05D003983 ORTHO05D004562 7.6e-28 127.9 118 55.9
Sp1g23070 Schrenkiella parvula HOM05D003983 ORTHO05D004562 7.6e-28 127.9 117 60.7
HanXRQChr12g0366151 Helianthus annuus HOM05D003983 ORTHO05D004562 9.9e-28 127.5 118 56.8
TPR.G34556 Trifolium pratense HOM05D003983 ORTHO05D004562 9.9e-28 127.5 163 46.0
AL4G18740 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 1.3e-27 127.1 114 58.8
A09p39040 Brassica napus HOM05D003983 ORTHO05D004562 1.3e-27 127.1 90 71.1
ECA233G0760 Erigeron canadensis HOM05D003983 ORTHO05D004562 1.3e-27 127.1 102 61.8
Phvul.003G014300 Phaseolus vulgaris HOM05D003983 ORTHO05D004562 1.3e-27 127.1 99 68.7
Sc08g0003180 Simmondsia chinensis HOM05D003983 ORTHO05D004562 1.3e-27 127.1 120 58.3
unitig_699.g19470 Utricularia gibba HOM05D003983 ORTHO05D004562 1.3e-27 127.1 100 65.0
AL1G40150 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 1.7e-27 126.7 112 58.0
CARHR026340 Cardamine hirsuta HOM05D003983 ORTHO05D004562 2.2e-27 126.3 90 70.0
CiPaw.06G059200 Carya illinoinensis HOM05D003983 ORTHO05D004562 2.2e-27 126.3 112 58.0
THA.LOC104809791 Tarenaya hassleriana HOM05D003983 ORTHO05D004562 2.2e-27 126.3 117 58.1
TAR622G0111 Trochodendron aralioides HOM05D003983 ORTHO05D004562 2.2e-27 126.3 96 65.6
Aa31LG7G9320 Aethionema arabicum HOM05D003983 ORTHO05D004562 2.9e-27 125.9 106 63.2
BcaC05g26695 Brassica carinata HOM05D003983 ORTHO05D004562 2.9e-27 125.9 90 70.0
AT1G24909 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 3.8e-27 125.6 90 70.0
AT1G25083 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 3.8e-27 125.6 90 70.0
AT1G25155 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 3.8e-27 125.6 90 70.0
Medtr1g033480 Medicago truncatula HOM05D003983 ORTHO05D004562 3.8e-27 125.6 100 64.0
Eucgr.A00016 Eucalyptus grandis HOM05D003983 ORTHO05D004562 4.9e-27 125.2 98 63.3
Os03g0718000 Oryza sativa ssp. japonica HOM05D003983 ORTHO05D004562 4.9e-27 125.2 97 63.9
FAN17G0269 Fragaria x ananassa HOM05D003983 ORTHO05D004562 1.1e-26 124.0 93 64.5
TWI56G0668 Tripterygium wilfordii HOM05D003983 ORTHO05D004562 1.9e-26 123.2 97 63.9
ClCG07G006850 Citrullus lanatus HOM05D003983 ORTHO05D004562 3.2e-26 122.5 135 53.3
ClCG07G006870 Citrullus lanatus HOM05D003983 ORTHO05D004562 3.2e-26 122.5 182 46.2
Os04g0463500 Oryza sativa ssp. japonica HOM05D003983 ORTHO05D004562 3.2e-26 122.5 109 59.6
Pp3c3_33470 Physcomitrium patens HOM05D003983 ORTHO05D004562 3.2e-26 122.5 111 56.8
Hund19014 Selenicereus undatus HOM05D003983 ORTHO05D004562 5.4e-26 121.7 90 66.7
BraA08t34625Z Brassica rapa HOM05D003983 ORTHO05D004562 9.2e-26 120.9 123 55.3
Zm00001eb424380 Zea mays HOM05D003983 ORTHO05D004562 9.2e-26 120.9 90 65.6
Zm00001eb080510 Zea mays HOM05D003983 ORTHO05D004562 2.1e-25 119.8 118 55.1
ATR0100G040 Amborella trichopoda HOM05D003983 ORTHO05D004562 2.7e-25 119.4 94 63.8
Nitab4.5_0001478g0080 Nicotiana tabacum HOM05D003983 ORTHO05D004562 2.7e-25 119.4 130 52.3
Ah.04g149470 Amaranthus hybridus HOM05D003983 ORTHO05D004562 3.5e-25 119.0 110 57.3
PGR102G0108 Punica granatum HOM05D003983 ORTHO05D004562 3.5e-25 119.0 137 51.1
BolC3t19615H Brassica oleracea HOM05D003983 ORTHO05D004562 4.6e-25 118.6 128 53.1
BolC5t31275H Brassica oleracea HOM05D003983 ORTHO05D004562 4.6e-25 118.6 107 60.7
AT1G25220 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 6.0e-25 118.2 103 61.2
Pp3c10_17060 Physcomitrium patens HOM05D003983 ORTHO05D004562 6.0e-25 118.2 90 60.0
EL10Ac3g07448 Beta vulgaris HOM05D003983 ORTHO05D004562 7.8e-25 117.9 90 63.3
SMO358G0613 Selaginella moellendorffii HOM05D003983 ORTHO05D004562 7.8e-25 117.9 95 60.0
SEGI_15310 Sequoiadendron giganteum HOM05D003983 ORTHO05D004562 1.0e-24 117.5 91 62.6
ATR0598G020 Amborella trichopoda HOM05D003983 ORTHO05D004562 1.7e-24 116.7 128 52.3
AagrBONN_evm.TU.Sc2ySwM_362.1213 Anthoceros agrestis HOM05D003983 ORTHO05D004562 1.7e-24 116.7 118 50.8
AT1G24807 Arabidopsis thaliana HOM05D003983 ORTHO05D004562 2.3e-24 116.3 103 61.2
Mapoly0037s0136 Marchantia polymorpha HOM05D003983 ORTHO05D004562 2.3e-24 116.3 102 52.9
AUR62020869 Chenopodium quinoa HOM05D003983 ORTHO05D004562 3.9e-24 115.5 89 64.0
BraA09t39404Z Brassica rapa HOM05D003983 ORTHO05D004562 6.6e-24 114.8 111 57.7
Cre14.g620300 Chlamydomonas reinhardtii HOM05D003983 ORTHO05D004562 9.6e-23 110.9 100 56.0
CDE11G0429 Ceratophyllum demersum HOM05D003983 ORTHO05D004562 2.1e-22 109.8 124 51.6
Rhsim09G0086300 Rhododendron simsii HOM05D003983 ORTHO05D004562 2.8e-22 109.4 190 40.0
Ciclev10030118m.g Citrus clementina HOM05D003983 ORTHO05D004562 5.2e-21 105.1 100 60.0
AUR62018550 Chenopodium quinoa HOM05D003983 ORTHO05D004562 3.4e-20 102.4 88 59.1
SalBow5G2576 Salvia bowleyana HOM05D003983 ORTHO05D004562 2.9e-19 99.4 105 57.1
RcHm_v2.0_Chr4g0388411 Rosa chinensis HOM05D003983 ORTHO05D004562 1.9e-18 96.7 75 66.7
CAN.G551.33 Capsicum annuum HOM05D003983 ORTHO05D004562 3.2e-18 95.9 73 67.1
PRCOL_00000049 Prasinoderma coloniale HOM05D003983 ORTHO05D004562 3.5e-17 92.4 90 45.6
Lj3C860T0 Lonicera japonica HOM05D003983 ORTHO05D004562 1.3e-16 90.5 75 61.3
Ca_29558_v3 Cicer arietinum L. HOM05D003983 ORTHO05D004562 1.7e-16 90.1 73 64.4
AL358U10020 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 2.3e-16 89.7 70 60.0
MCO13G279 Micromonas commoda HOM05D003983 ORTHO05D004562 8.7e-16 87.8 97 44.3
HPP92_010989 Vanilla planifolia HOM05D003983 ORTHO05D004562 3.6e-14 82.4 75 54.7
Gohir.A13G030100 Gossypium hirsutum HOM05D003983 ORTHO05D004562 1.1e-13 80.9 85 56.5
AL5G19970 Arabidopsis lyrata HOM05D003983 ORTHO05D004562 3.1e-13 79.3 73 58.9
Gorai.013G032100 Gossypium raimondii HOM05D003983 ORTHO05D004562 4.9e-11 72.0 85 48.2
MBI19_g25215_MAGBIO Magnolia biondii HOM05D003983 ORTHO05D004562 4.9e-11 72.0 41 73.2
Nitab4.5_0000283g0460 Nicotiana tabacum HOM05D003983 ORTHO05D004562 2.7e-09 66.2 62 50.0
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 1.8e-08 63.5 86 38.4
Cre03.g181400 Chlamydomonas reinhardtii HOM05D004788 ORTHO05D006465 2.5e-07 59.7 89 37.1
Zm00001eb055320 Zea mays HOM05D003983 ORTHO05D004562 2.8e-06 56.2 38 73.7
Gohir.A03G112800 Gossypium hirsutum HOM05D003983 ORTHO05D004562 3.7e-06 55.8 51 60.8


User provided reference genes

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