Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.1e-173 613.2 314 100.0
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 5.5e-149 531.2 314 85.4
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 6.7e-123 444.5 319 69.6
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 9.1e-120 434.1 316 70.6
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 1.8e-112 409.8 319 65.8
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 4.7e-108 395.2 320 65.0
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 2.9e-89 332.8 317 55.2
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 2.7e-87 326.2 321 55.5
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 9.5e-85 317.8 318 55.0
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.8e-84 316.2 318 56.6
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 4.7e-84 315.5 321 54.2
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 6.2e-84 315.1 316 51.6
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 6.2e-84 315.1 321 54.2
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 6.8e-83 311.6 312 54.5
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.0e-82 310.1 330 50.0
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 2.6e-82 309.7 297 54.9
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 1.3e-81 307.4 321 55.1
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 4.9e-81 305.4 319 53.3
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.1e-79 300.1 315 52.7
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 3.5e-79 299.3 323 51.4
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 2.3e-78 296.6 312 53.8
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 2.3e-78 296.6 324 53.1
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 5.1e-78 295.4 308 48.7
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 8.6e-78 294.7 311 51.4
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.9e-77 293.5 312 49.7
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.5e-77 293.1 305 50.2
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 4.3e-77 292.4 301 53.8
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 4.3e-77 292.4 316 48.7
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 7.3e-77 291.6 301 52.2
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 7.3e-77 291.6 296 53.4
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 9.5e-77 291.2 315 50.8
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 9.5e-77 291.2 280 55.0
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 2.8e-76 289.7 319 48.6
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 1.8e-75 287.0 315 52.4
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 3.1e-75 286.2 319 49.5
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 4.0e-75 285.8 315 52.4
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 5.2e-75 285.4 328 50.6
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 1.2e-74 284.3 307 49.2
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 2.6e-74 283.1 312 50.0
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 3.4e-74 282.7 325 49.8
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 9.9e-74 281.2 321 46.7
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.9e-74 281.2 330 46.4
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 9.9e-74 281.2 316 49.4
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 1.3e-73 280.8 323 49.5
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.3e-73 280.8 299 51.2
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 1.7e-73 280.4 308 47.4
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 3.7e-73 279.3 308 47.1
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 8.4e-73 278.1 307 47.6
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 1.4e-72 277.3 267 53.9
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.9e-72 276.9 311 51.4
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 1.9e-72 276.9 313 49.5
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 5.4e-72 275.4 325 47.7
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 1.2e-71 274.2 312 49.0
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 7.8e-71 271.6 323 46.1
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 1.0e-70 271.2 298 49.0
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 1.7e-70 270.4 319 48.0
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 3.0e-70 269.6 319 47.6
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.5e-69 267.3 310 46.5
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 2.5e-69 266.5 324 48.5
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 3.3e-69 266.2 320 48.1
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 9.6e-69 264.6 258 56.2
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.8e-68 263.1 312 48.4
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 4.7e-68 262.3 292 49.7
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 8.1e-68 261.5 323 44.9
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 1.1e-67 261.2 325 46.8
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.4e-67 260.8 292 49.3
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 2.4e-67 260.0 319 46.7
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 2.4e-67 260.0 258 55.4
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 3.1e-67 259.6 324 47.2
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 3.1e-67 259.6 324 47.2
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 3.1e-67 259.6 324 47.2
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 4.0e-67 259.2 321 43.9
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 4.0e-67 259.2 320 48.4
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 5.2e-67 258.8 324 47.5
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 5.2e-67 258.8 324 47.5
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 6.8e-67 258.5 326 46.6
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 8.9e-67 258.1 361 44.0
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.2e-66 257.7 297 49.2
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 1.5e-66 257.3 311 47.3
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 1.5e-66 257.3 318 45.9
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.5e-66 257.3 287 49.8
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 1.5e-66 257.3 321 45.5
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 1.5e-66 257.3 324 46.3
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 2.0e-66 256.9 326 46.9
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 3.4e-66 256.1 320 43.8
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 4.4e-66 255.8 326 46.3
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 4.4e-66 255.8 326 46.6
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 5.8e-66 255.4 317 48.3
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 7.6e-66 255.0 318 44.7
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 1.7e-65 253.8 322 46.9
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 1.7e-65 253.8 322 46.9
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 2.2e-65 253.4 309 44.3
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 2.9e-65 253.1 320 42.8
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 8.4e-65 251.5 310 44.2
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 8.4e-65 251.5 322 46.6
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.1e-64 251.1 315 47.6
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.4e-64 250.8 326 45.4
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 1.4e-64 250.8 299 47.5
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.9e-64 250.4 325 46.8
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 2.4e-64 250.0 322 45.7
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 2.4e-64 250.0 322 46.6
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 2.4e-64 250.0 321 48.3
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 3.2e-64 249.6 299 48.8
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 4.2e-64 249.2 319 46.4
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 4.2e-64 249.2 324 45.1
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 5.4e-64 248.8 321 48.0
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 7.1e-64 248.4 320 46.2
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.6e-63 247.3 415 39.8
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 2.7e-63 246.5 324 45.7
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 2.7e-63 246.5 324 45.7
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 2.7e-63 246.5 324 45.7
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 4.6e-63 245.7 295 46.4
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 6.0e-63 245.4 334 46.4
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 7.8e-63 245.0 323 46.7
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 5.1e-62 242.3 308 44.2
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 1.5e-61 240.7 323 42.1
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.5e-61 240.7 321 48.0
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.3e-61 239.2 311 45.7
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 7.3e-61 238.4 312 44.2
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.3e-60 237.7 322 46.0
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.6e-60 237.3 315 46.3
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 8.1e-60 235.0 279 47.0
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.4e-59 234.2 260 45.4
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.2e-58 231.1 262 47.3
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 3.4e-58 229.6 287 43.9
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 5.8e-58 228.8 310 41.9
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 1.3e-57 227.6 323 40.6
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.7e-57 227.3 317 42.9
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.7e-57 227.3 299 41.8
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 1.1e-56 224.6 388 39.2
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.4e-56 224.2 320 41.9
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 3.2e-56 223.0 317 40.7
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.1e-53 214.5 256 47.3
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 1.1e-51 208.0 308 43.5
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 3.1e-51 206.5 341 39.9
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 5.1e-46 189.1 216 48.6
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 1.3e-44 184.5 248 38.7
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.6e-39 167.5 215 48.4
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.5e-32 143.7 165 49.7
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 3.0e-30 136.7 321 30.2
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.3e-28 131.3 316 28.5
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 2.2e-28 130.6 165 44.8
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.7e-28 129.8 312 31.1
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 2.4e-27 127.1 319 32.6
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 4.5e-26 122.9 170 42.9
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 6.7e-22 109.0 192 35.4
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 1.1e-16 91.7 116 47.4
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 2.1e-15 87.4 134 36.6
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 6.1e-15 85.9 134 35.8
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.7e-13 78.6 86 39.5
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 9.7e-13 78.6 86 39.5
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 1.3e-12 78.2 92 40.2
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.2e-12 77.4 89 46.1
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 4.8e-12 76.3 81 43.2
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 8.2e-12 75.5 72 44.4
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 5.3e-11 72.8 86 43.0
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 9.1e-11 72.0 80 42.5
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.5e-10 69.7 100 34.0
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 7.2e-08 62.4 142 33.8
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 4.7e-07 59.7 83 39.8


User provided reference genes

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