Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 5.7e-161 570.9 286 100.0
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 8.1e-99 364.4 285 70.2
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 5.1e-69 265.4 281 54.1
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 4.3e-68 262.3 273 55.7
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 3.4e-65 252.7 273 54.2
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 1.9e-63 246.9 195 65.6
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 5.5e-63 245.4 189 63.5
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 7.1e-63 245.0 189 65.6
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 1.6e-62 243.8 192 64.6
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 1.6e-62 243.8 189 65.1
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 2.1e-62 243.4 203 65.5
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 6.0e-62 241.9 189 65.6
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 1.3e-61 240.7 188 67.0
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 3.9e-61 239.2 204 64.2
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 5.1e-61 238.8 191 62.8
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 6.7e-61 238.4 190 64.7
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.1e-60 237.7 187 66.8
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 1.5e-60 237.3 187 66.3
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.9e-60 236.9 204 63.2
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 1.9e-60 236.9 192 64.1
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 1.9e-60 236.9 187 65.8
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.1e-59 233.4 203 62.6
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 2.1e-59 233.4 193 61.7
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 2.1e-59 233.4 195 64.6
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 2.8e-59 233.0 188 64.4
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 6.3e-59 231.9 208 61.1
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 6.3e-59 231.9 204 62.3
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.1e-58 231.1 193 61.1
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 1.4e-58 230.7 285 48.8
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.8e-58 230.3 229 57.6
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 1.8e-58 230.3 188 62.2
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 5.3e-58 228.8 206 60.7
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 6.9e-58 228.4 187 62.0
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 9.0e-58 228.0 210 58.1
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 9.0e-58 228.0 203 63.5
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.2e-57 227.6 202 61.9
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.5e-57 227.3 195 59.5
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 1.5e-57 227.3 200 61.0
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 3.4e-57 226.1 183 63.4
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 4.5e-57 225.7 206 58.7
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 4.5e-57 225.7 184 64.7
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 5.9e-57 225.3 197 60.4
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 7.6e-57 224.9 192 62.5
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 1.0e-56 224.6 184 61.4
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.0e-56 224.6 204 60.8
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 1.3e-56 224.2 195 63.6
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 1.3e-56 224.2 216 57.9
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 2.9e-56 223.0 192 59.4
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 2.9e-56 223.0 192 59.4
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 2.9e-56 223.0 184 62.0
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 3.8e-56 222.6 195 59.0
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 6.5e-56 221.9 197 60.9
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 1.4e-55 220.7 184 60.9
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 1.9e-55 220.3 188 61.2
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 2.5e-55 219.9 202 60.4
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 2.5e-55 219.9 193 62.2
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 4.2e-55 219.2 193 60.6
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 4.2e-55 219.2 196 61.7
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 9.3e-55 218.0 183 62.3
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 9.3e-55 218.0 195 59.0
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 9.3e-55 218.0 198 59.1
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 9.3e-55 218.0 188 65.4
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 1.2e-54 217.6 195 61.0
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 1.6e-54 217.2 193 60.1
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 2.7e-54 216.5 187 61.0
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 3.6e-54 216.1 193 59.6
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 4.6e-54 215.7 191 61.8
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 4.6e-54 215.7 194 59.8
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 4.6e-54 215.7 193 59.1
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 6.1e-54 215.3 194 57.7
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.3e-53 214.2 197 58.9
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 1.8e-53 213.8 188 58.5
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.8e-53 213.8 192 57.8
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 1.8e-53 213.8 188 58.5
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.8e-53 213.8 197 58.4
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 3.0e-53 213.0 195 58.5
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 3.0e-53 213.0 182 58.8
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 3.9e-53 212.6 185 58.9
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 3.9e-53 212.6 182 58.8
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 5.1e-53 212.2 193 60.6
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 5.1e-53 212.2 198 56.1
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.5e-52 210.7 197 57.9
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.5e-52 210.7 197 57.9
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.5e-52 210.7 197 57.9
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 1.5e-52 210.7 197 57.9
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.4e-52 208.4 214 55.6
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 9.7e-52 208.0 193 57.5
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.3e-51 207.6 188 56.9
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 1.3e-51 207.6 192 60.9
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 1.6e-51 207.2 188 56.9
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 2.8e-51 206.5 201 57.2
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 6.3e-51 205.3 198 58.1
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 1.1e-50 204.5 185 58.4
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.1e-50 203.0 182 62.6
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 5.3e-50 202.2 182 57.7
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 6.9e-50 201.8 202 55.0
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 9.0e-50 201.4 187 57.8
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 2.6e-49 199.9 187 60.4
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.6e-49 199.9 182 62.1
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 3.4e-49 199.5 182 61.5
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 4.5e-49 199.1 184 58.2
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 7.7e-49 198.4 198 57.6
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.7e-48 197.2 180 61.7
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 3.8e-48 196.1 182 55.5
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 3.8e-48 196.1 189 59.8
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 5.0e-48 195.7 199 55.8
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 5.0e-48 195.7 199 55.8
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 8.5e-48 194.9 192 57.3
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.1e-47 194.5 191 55.0
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 1.1e-47 194.5 158 64.6
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 1.1e-47 194.5 189 56.6
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 2.5e-47 193.4 199 54.8
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.5e-47 193.4 198 54.0
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 2.5e-47 193.4 192 55.2
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 3.2e-47 193.0 210 49.5
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 9.4e-47 191.4 151 65.6
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 1.6e-46 190.7 198 53.5
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.4e-45 187.6 153 63.4
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 1.4e-45 187.6 198 54.5
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 1.4e-45 187.6 183 57.4
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 3.9e-45 186.0 188 53.7
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 5.1e-45 185.7 161 60.9
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.0e-44 183.7 207 51.7
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 2.0e-44 183.7 198 53.5
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 2.0e-44 183.7 198 53.5
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 3.3e-44 183.0 153 61.4
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 9.7e-44 181.4 202 51.0
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 1.3e-43 181.0 211 50.7
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 4.8e-43 179.1 161 59.0
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 8.2e-43 178.3 161 58.4
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 8.2e-43 178.3 161 58.4
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 4.1e-42 176.0 198 50.5
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 1.3e-40 171.0 183 49.7
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 1.4e-39 167.5 145 61.4
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 2.3e-37 160.2 175 54.9
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 3.3e-36 156.4 190 52.1
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 2.8e-35 153.3 206 47.6
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 1.2e-33 147.9 119 64.7
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.6e-33 147.5 201 45.8
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 2.6e-33 146.7 191 46.1
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 4.5e-33 146.0 115 66.1
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 6.7e-29 132.1 192 41.1
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 4.4e-28 129.4 192 42.2
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 5.7e-28 129.0 102 65.7
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 7.5e-28 128.6 199 42.7
Oeu060910.1 Olea europaea HOM05D004453 ORTHO05D005375 6.3e-27 125.6 166 46.4
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.7e-25 120.2 185 42.7
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 4.5e-25 119.4 89 66.3
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 7.2e-23 112.1 100 59.0
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 8.8e-21 105.1 86 61.6
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.2e-20 104.8 195 35.9
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 8.8e-13 78.6 84 50.0
BcaB01g02219 Brassica carinata HOM05D004453 ORTHO05D005375 7.5e-12 75.5 97 45.4
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.3e-07 60.1 165 35.2


User provided reference genes

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