Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 2.2e-35 152.1 102 100.0
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 6.3e-22 107.5 69 69.6
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 3.6e-17 91.7 68 63.2
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 1.4e-16 89.7 63 63.5
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.3e-16 89.0 64 64.1
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 8.9e-16 87.0 64 62.5
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 8.9e-16 87.0 64 62.5
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 1.5e-15 86.3 63 60.3
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.4e-15 84.7 64 62.5
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 7.5e-15 84.0 64 62.5
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 3.7e-14 81.6 61 59.0
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 3.7e-14 81.6 61 60.7
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 4.9e-14 81.3 59 62.7
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 6.4e-14 80.9 61 57.4
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 8.3e-14 80.5 61 59.0
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 1.1e-13 80.1 69 55.1
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 1.4e-13 79.7 63 57.1
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 1.8e-13 79.3 69 55.1
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 2.4e-13 79.0 65 55.4
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 3.2e-13 78.6 69 55.1
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 4.1e-13 78.2 71 53.5
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 5.4e-13 77.8 63 57.1
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 7.0e-13 77.4 61 55.7
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 7.0e-13 77.4 69 55.1
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 2.0e-12 75.9 61 57.4
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 2.7e-12 75.5 61 55.7
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.7e-12 75.5 61 55.7
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.7e-12 75.5 61 55.7
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 2.7e-12 75.5 68 50.0
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 2.7e-12 75.5 63 54.0
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 2.7e-12 75.5 61 55.7
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 3.5e-12 75.1 61 55.7
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 6.0e-12 74.3 61 54.1
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.8e-12 73.9 61 55.7
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 7.8e-12 73.9 59 59.3
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 1.0e-11 73.6 68 50.0
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 1.0e-11 73.6 72 48.6
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 1.7e-11 72.8 64 53.1
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 3.0e-11 72.0 68 51.5
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 8.6e-11 70.5 68 51.5
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 1.1e-10 70.1 63 50.8
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.5e-10 69.7 63 52.4
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 2.5e-10 68.9 71 47.9
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 4.3e-10 68.2 63 50.8
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 1.6e-09 66.2 63 47.6
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 1.6e-09 66.2 69 52.2
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 2.8e-09 65.5 61 49.2
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 3.6e-09 65.1 72 44.4
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 4.7e-09 64.7 69 43.5
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 4.7e-09 64.7 50 56.0
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 8.0e-09 63.9 63 55.6
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 1.1e-08 63.5 61 50.8
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.4e-08 63.2 63 47.6
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 2.3e-08 62.4 56 53.6
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 2.3e-08 62.4 63 52.4
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.1e-08 62.0 56 53.6
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 3.1e-08 62.0 65 46.2
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 3.1e-08 62.0 62 45.2
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 4.0e-08 61.6 68 45.6
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 4.0e-08 61.6 56 53.6
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 5.2e-08 61.2 63 47.6
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 5.2e-08 61.2 56 53.6
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 5.2e-08 61.2 56 53.6
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 5.2e-08 61.2 63 52.4
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 6.8e-08 60.8 56 53.6
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 6.8e-08 60.8 56 53.6
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 6.8e-08 60.8 56 53.6
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 8.9e-08 60.5 54 53.7
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 8.9e-08 60.5 54 53.7
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 8.9e-08 60.5 56 53.6
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.5e-07 59.7 61 52.5
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.0e-07 59.3 63 54.0
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 2.6e-07 58.9 56 51.8
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 2.6e-07 58.9 56 51.8
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 2.6e-07 58.9 69 42.0
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 2.6e-07 58.9 65 44.6
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 2.6e-07 58.9 65 44.6
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 3.4e-07 58.5 61 45.9
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 7.5e-07 57.4 69 43.5
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 7.5e-07 57.4 63 50.8
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 7.5e-07 57.4 63 50.8
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 7.5e-07 57.4 63 50.8
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 7.5e-07 57.4 64 42.2
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 7.5e-07 57.4 63 44.4
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 9.8e-07 57.0 63 50.8
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 9.8e-07 57.0 63 50.8
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 9.8e-07 57.0 61 42.6
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 9.8e-07 57.0 61 42.6
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-06 56.6 63 47.6
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 1.7e-06 56.2 63 50.8
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 1.7e-06 56.2 63 49.2
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.7e-06 56.2 61 42.6
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 1.7e-06 56.2 61 42.6
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 2.2e-06 55.8 63 36.5
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 2.9e-06 55.5 56 51.8
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 3.7e-06 55.1 69 43.5
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 4.9e-06 54.7 63 47.6
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 4.9e-06 54.7 68 36.8
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 6.4e-06 54.3 53 49.1
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 6.4e-06 54.3 63 49.2
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 6.4e-06 54.3 61 36.1


User provided reference genes

Program Settings