Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01646 Striga asiatica HOM05D005947 ORTHO05D007498 3.7e-61 238.0 122 100.0
SGA_v2.0_scaffold60G21105 Striga asiatica HOM05D005947 ORTHO05D007498 2.4e-20 102.4 103 62.1
VMungo0464G0961 Vigna mungo HOM05D005947 ORTHO05D007498 1.3e-16 90.1 92 60.9
SalBow4G2978 Salvia bowleyana HOM05D005947 ORTHO05D007498 4.8e-16 88.2 104 54.8
Psat0ss1860g0200 Pisum sativum HOM05D005947 ORTHO05D007498 1.4e-15 86.7 95 57.9
Phvul.004G106800 Phaseolus vulgaris HOM05D005947 ORTHO05D007498 1.8e-15 86.3 90 61.1
TPR.G33515 Trifolium pratense HOM05D005947 ORTHO05D007498 4.0e-15 85.1 109 52.3
Cc02_g02400 Coffea canephora HOM05D005947 ORTHO05D007498 9.0e-15 84.0 114 50.9
Cc04_g12430 Coffea canephora HOM05D005947 ORTHO05D007498 9.0e-15 84.0 114 50.9
Glyma.16G179200 Glycine max HOM05D005947 ORTHO05D007498 9.0e-15 84.0 110 55.5
Rhsim09G0200500 Rhododendron simsii HOM05D005947 ORTHO05D007498 9.0e-15 84.0 107 52.3
QL09p012952 Quercus lobata HOM05D005947 ORTHO05D007498 1.2e-14 83.6 115 48.7
THA.LOC104814930 Tarenaya hassleriana HOM05D005947 ORTHO05D007498 1.2e-14 83.6 110 50.9
Gohir.D08G109600 Gossypium hirsutum HOM05D005947 ORTHO05D007498 2.0e-14 82.8 112 50.9
Gorai.004G117300 Gossypium raimondii HOM05D005947 ORTHO05D007498 2.0e-14 82.8 112 50.9
PSO478G4027 Papaver somniferum HOM05D005947 ORTHO05D007498 2.6e-14 82.4 117 51.3
PSO782G1988 Papaver somniferum HOM05D005947 ORTHO05D007498 2.6e-14 82.4 101 56.4
CANSAT21G1923 Cannabis sativa HOM05D005947 ORTHO05D007498 3.4e-14 82.0 55 80.0
Cpa.g.sc107.105 Carica papaya HOM05D005947 ORTHO05D007498 3.4e-14 82.0 106 51.9
Cfa016284 Carpinus fangiana HOM05D005947 ORTHO05D007498 3.4e-14 82.0 55 80.0
Ciclev10005457m.g Citrus clementina HOM05D005947 ORTHO05D007498 3.4e-14 82.0 55 80.0
Haze_00040 Corylus avellana HOM05D005947 ORTHO05D007498 3.4e-14 82.0 55 80.0
CsaV3_5G001080 Cucumis sativus L. HOM05D005947 ORTHO05D007498 3.4e-14 82.0 114 49.1
Dinv28389 Davidia involucrata HOM05D005947 ORTHO05D007498 3.4e-14 82.0 55 80.0
Dinv35250 Davidia involucrata HOM05D005947 ORTHO05D007498 3.4e-14 82.0 55 80.0
Duzib205G0732 Durio zibethinus HOM05D005947 ORTHO05D007498 3.4e-14 82.0 55 80.0
ECA232G3749 Erigeron canadensis HOM05D005947 ORTHO05D007498 3.4e-14 82.0 55 80.0
Eucgr.A02743 Eucalyptus grandis HOM05D005947 ORTHO05D007498 3.4e-14 82.0 55 80.0
Lj1P1004T65 Lonicera japonica HOM05D005947 ORTHO05D007498 3.4e-14 82.0 55 80.0
RcHm_v2.0_Chr1g0378251 Rosa chinensis HOM05D005947 ORTHO05D007498 3.4e-14 82.0 55 80.0
Ca_20085_v3 Cicer arietinum L. HOM05D005947 ORTHO05D007498 4.5e-14 81.6 111 55.0
Glyma.09G132300 Glycine max HOM05D005947 ORTHO05D007498 4.5e-14 81.6 123 53.7
Manes.14G022800 Manihot esculenta HOM05D005947 ORTHO05D007498 4.5e-14 81.6 109 51.4
Prupe.2G300600 Prunus persica HOM05D005947 ORTHO05D007498 4.5e-14 81.6 84 60.7
unitig_37.g11971 Utricularia gibba HOM05D005947 ORTHO05D007498 4.5e-14 81.6 99 55.6
Aa31LG11G3310 Aethionema arabicum HOM05D005947 ORTHO05D007498 5.8e-14 81.3 108 48.1
ClCG01G000930 Citrullus lanatus HOM05D005947 ORTHO05D007498 5.8e-14 81.3 55 78.2
MELO3C005838.2 Cucumis melo HOM05D005947 ORTHO05D007498 5.8e-14 81.3 55 78.2
Gohir.A08G098000 Gossypium hirsutum HOM05D005947 ORTHO05D007498 5.8e-14 81.3 112 50.9
Lalb_Chr03g0034831 Lupinus albus HOM05D005947 ORTHO05D007498 5.8e-14 81.3 118 48.3
Nn1g01628 Nelumbo nucifera HOM05D005947 ORTHO05D007498 5.8e-14 81.3 55 78.2
CDE11G0334 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 7.6e-14 80.9 55 80.0
Migut.F00295 Erythranthe guttata HOM05D005947 ORTHO05D007498 7.6e-14 80.9 55 80.0
Lj2g0014936 Lotus japonicus HOM05D005947 ORTHO05D007498 7.6e-14 80.9 55 78.2
Medtr6g048300 Medicago truncatula HOM05D005947 ORTHO05D007498 7.6e-14 80.9 99 54.5
Nn6g33304 Nelumbo nucifera HOM05D005947 ORTHO05D007498 7.6e-14 80.9 103 53.4
Nitab4.5_0000084g0430 Nicotiana tabacum HOM05D005947 ORTHO05D007498 7.6e-14 80.9 55 80.0
Nitab4.5_0008851g0010 Nicotiana tabacum HOM05D005947 ORTHO05D007498 7.6e-14 80.9 55 80.0
PGR042G2417 Punica granatum HOM05D005947 ORTHO05D007498 7.6e-14 80.9 106 49.1
Sabra04G0053200 Salix brachista HOM05D005947 ORTHO05D007498 7.6e-14 80.9 55 78.2
Solyc03g007980.1 Solanum lycopersicum HOM05D005947 ORTHO05D007498 7.6e-14 80.9 55 80.0
Sopen03g003920 Solanum pennellii HOM05D005947 ORTHO05D007498 7.6e-14 80.9 55 80.0
PGSC0003DMG400010127 Solanum tuberosum HOM05D005947 ORTHO05D007498 7.6e-14 80.9 55 80.0
Atru.chr1.362 Acer truncatum HOM05D005947 ORTHO05D007498 9.9e-14 80.5 55 78.2
DCAR_010659 Daucus carota HOM05D005947 ORTHO05D007498 9.9e-14 80.5 55 80.0
FAN01G2305 Fragaria x ananassa HOM05D005947 ORTHO05D007498 9.9e-14 80.5 55 78.2
FAN03G2555 Fragaria x ananassa HOM05D005947 ORTHO05D007498 9.9e-14 80.5 55 78.2
FAN03G2880 Fragaria x ananassa HOM05D005947 ORTHO05D007498 9.9e-14 80.5 55 78.2
FAN10G0541 Fragaria x ananassa HOM05D005947 ORTHO05D007498 9.9e-14 80.5 55 78.2
FAN10G2124 Fragaria x ananassa HOM05D005947 ORTHO05D007498 9.9e-14 80.5 55 78.2
Thecc.03G183900 Theobroma cacao HOM05D005947 ORTHO05D007498 9.9e-14 80.5 113 50.4
TWI14G0750 Tripterygium wilfordii HOM05D005947 ORTHO05D007498 9.9e-14 80.5 55 80.0
Aa31sc89G80 Aethionema arabicum HOM05D000041 ORTHO05D000061 1.3e-13 80.1 105 48.6
ATR0661G312 Amborella trichopoda HOM05D005947 ORTHO05D007498 1.3e-13 80.1 118 50.0
BcaB04g19841 Brassica carinata HOM05D005947 ORTHO05D007498 1.3e-13 80.1 55 78.2
CiPaw.05G262900 Carya illinoinensis HOM05D005947 ORTHO05D007498 1.3e-13 80.1 97 54.6
Duzib084G0036 Durio zibethinus HOM05D005947 ORTHO05D007498 1.3e-13 80.1 104 52.9
Lalb_Chr01g0009481 Lupinus albus HOM05D005947 ORTHO05D007498 1.3e-13 80.1 124 47.6
TWI39G0764 Tripterygium wilfordii HOM05D005947 ORTHO05D007498 1.3e-13 80.1 99 57.6
Aqoxy7G00241 Aquilegia oxysepala HOM05D005947 ORTHO05D007498 1.7e-13 79.7 117 49.6
MSTRG.27089 Avicennia marina HOM05D005947 ORTHO05D007498 1.7e-13 79.7 99 53.5
MSTRG.8712 Avicennia marina HOM05D005947 ORTHO05D007498 1.7e-13 79.7 99 52.5
CAN.G236.6 Capsicum annuum HOM05D005947 ORTHO05D007498 1.7e-13 79.7 113 50.4
Sed0018068 Sechium edule HOM05D005947 ORTHO05D007498 1.7e-13 79.7 55 76.4
vmacro09816 Vaccinium macrocarpon HOM05D005947 ORTHO05D007498 1.7e-13 79.7 102 52.9
Actinidia31839 Actinidia chinensis HOM05D005947 ORTHO05D007498 2.2e-13 79.3 55 76.4
AL6G35340 Arabidopsis lyrata HOM05D005947 ORTHO05D007498 2.2e-13 79.3 55 76.4
arahy.Tifrunner.gnm1.ann1.4MV0VI Arachis hypogaea HOM05D005947 ORTHO05D007498 2.2e-13 79.3 108 50.9
C07p43700 Brassica napus HOM05D005947 ORTHO05D007498 2.2e-13 79.3 55 76.4
BolC7t44900H Brassica oleracea HOM05D005947 ORTHO05D007498 2.2e-13 79.3 55 76.4
COL.COLO4_10059 Corchorus olitorius HOM05D005947 ORTHO05D007498 2.2e-13 79.3 97 53.6
Thhalv10005713m.g Eutrema salsugineum HOM05D005947 ORTHO05D007498 2.2e-13 79.3 55 76.4
Lsat_1_v5_gn_9_56500 Lactuca sativa HOM05D005947 ORTHO05D007498 2.2e-13 79.3 113 51.3
Sp2g23290 Schrenkiella parvula HOM05D005947 ORTHO05D007498 2.2e-13 79.3 55 76.4
Sed0027671 Sechium edule HOM05D005947 ORTHO05D007498 2.2e-13 79.3 55 76.4
Ah.07g206580 Amaranthus hybridus HOM05D005947 ORTHO05D007498 2.9e-13 79.0 55 78.2
arahy.Tifrunner.gnm1.ann1.D9DNDH Arachis hypogaea HOM05D005947 ORTHO05D007498 2.9e-13 79.0 108 50.9
CSS0033085 Camellia sinensis var. sinensis HOM05D005947 ORTHO05D007498 2.9e-13 79.0 108 50.9
AUR62021126 Chenopodium quinoa HOM05D005947 ORTHO05D007498 2.9e-13 79.0 55 78.2
AUR62031418 Chenopodium quinoa HOM05D005947 ORTHO05D007498 2.9e-13 79.0 55 78.2
MBI11_g04748_MAGBIO Magnolia biondii HOM05D005947 ORTHO05D007498 2.9e-13 79.0 109 49.5
MD07G1278700 Malus domestica HOM05D005947 ORTHO05D007498 2.9e-13 79.0 113 51.3
A06p34800 Brassica napus HOM05D005947 ORTHO05D007498 3.8e-13 78.6 94 53.2
Hma1.2p1_0274F.1_g110170 Hydrangea macrophylla HOM05D005947 ORTHO05D007498 3.8e-13 78.6 120 50.0
Peaxi162Scf00444g00012 Petunia axillaris HOM05D005947 ORTHO05D007498 3.8e-13 78.6 110 50.9
Potri.004G080100 Populus trichocarpa HOM05D005947 ORTHO05D007498 3.8e-13 78.6 110 51.8
AagrBONN_evm.TU.Sc2ySwM_368.3402 Anthoceros agrestis HOM05D005947 ORTHO05D007498 4.9e-13 78.2 55 76.4
CARHR189560 Cardamine hirsuta HOM05D005947 ORTHO05D007498 4.9e-13 78.2 112 50.0
CDE02G4387 Ceratophyllum demersum HOM05D005947 ORTHO05D007498 4.9e-13 78.2 55 78.2
Sc19g0001250 Simmondsia chinensis HOM05D005947 ORTHO05D007498 4.9e-13 78.2 112 49.1
BcaNung01201 Brassica carinata HOM05D005947 ORTHO05D007498 6.4e-13 77.8 103 48.5
FAN06G0215 Fragaria x ananassa HOM05D005947 ORTHO05D007498 6.4e-13 77.8 108 50.9
FAN06G1268 Fragaria x ananassa HOM05D005947 ORTHO05D007498 6.4e-13 77.8 108 50.9
THA.LOC104798913 Tarenaya hassleriana HOM05D005947 ORTHO05D007498 6.4e-13 77.8 94 53.2
TAR374G0782 Trochodendron aralioides HOM05D005947 ORTHO05D007498 6.4e-13 77.8 55 76.4
BcaNung01829 Brassica carinata HOM05D005947 ORTHO05D007498 8.4e-13 77.4 108 50.9
FvH4_7g30210 Fragaria vesca HOM05D005947 ORTHO05D007498 8.4e-13 77.4 108 50.9
BraA06t26407Z Brassica rapa HOM05D005947 ORTHO05D007498 1.1e-12 77.0 101 52.5
Carub.0006s2174 Capsella rubella HOM05D005947 ORTHO05D007498 1.4e-12 76.6 98 52.0
SEGI_04763 Sequoiadendron giganteum HOM05D005947 ORTHO05D007498 1.4e-12 76.6 55 74.5
Pp3c1_24820 Physcomitrium patens HOM05D005947 ORTHO05D007498 1.9e-12 76.3 55 74.5
Pp3c2_15820 Physcomitrium patens HOM05D005947 ORTHO05D007498 1.9e-12 76.3 55 74.5
TAR375G0765 Trochodendron aralioides HOM05D005947 ORTHO05D007498 1.9e-12 76.3 118 48.3
AT5G24020 Arabidopsis thaliana HOM05D005947 ORTHO05D007498 2.4e-12 75.9 101 55.4
SMO364G0223 Selaginella moellendorffii HOM05D005947 ORTHO05D007498 9.3e-12 73.9 55 70.9
SGA_v2.0_scaffold32G13294 Striga asiatica HOM05D005947 ORTHO05D007498 9.3e-12 73.9 101 47.5
Zm00001eb268640 Zea mays HOM05D005947 ORTHO05D007498 1.6e-11 73.2 92 53.3
SGA_v2.0_scaffold89G27467 Striga asiatica HOM05D005947 ORTHO05D007498 1.8e-10 69.7 98 48.0
Cre12.g522950 Chlamydomonas reinhardtii HOM05D005947 ORTHO05D007498 3.0e-10 68.9 75 50.7
Os06g0106000 Oryza sativa ssp. japonica HOM05D005947 ORTHO05D007498 3.9e-10 68.6 88 52.3
SGA_v2.0_scaffold9G04983 Striga asiatica HOM05D007750 ORTHO05D009803 1.3e-08 63.5 51 68.6
Haze_27446 Corylus avellana HOM05D005947 ORTHO05D007498 5.8e-06 54.7 54 51.9


User provided reference genes

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