Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold16G07576 Striga asiatica HOM05D007263 ORTHO05D009187 5.5e-113 411.0 209 100.0
SGA_v2.0_scaffold3G01630 Striga asiatica HOM05D007263 ORTHO05D009187 5.5e-113 411.0 209 100.0
MSTRG.17655 Avicennia marina HOM05D007263 ORTHO05D009187 5.8e-70 268.1 200 69.0
Oeu032066.1 Olea europaea HOM05D007263 ORTHO05D009187 3.7e-61 238.8 211 64.0
SalBow3G2238 Salvia bowleyana HOM05D007263 ORTHO05D009187 1.6e-59 233.4 198 63.1
CAN.G651.2 Capsicum annuum HOM05D007263 ORTHO05D009187 9.2e-52 207.6 209 55.0
Solyc01g009080.4 Solanum lycopersicum HOM05D007263 ORTHO05D009187 1.6e-48 196.8 203 54.7
SGA_v2.0_scaffold29G12128 Striga asiatica HOM05D000563 ORTHO05D000536 1.6e-48 196.8 150 66.0
PGSC0003DMG400022700 Solanum tuberosum HOM05D007263 ORTHO05D009187 8.1e-48 194.5 203 54.2
TWI79G1263 Tripterygium wilfordii HOM05D007263 ORTHO05D009187 1.1e-47 194.1 211 50.2
Sopen01g004570 Solanum pennellii HOM05D007263 ORTHO05D009187 1.8e-47 193.4 203 53.7
Actinidia06355 Actinidia chinensis HOM05D007263 ORTHO05D009187 3.1e-47 192.6 217 51.2
Migut.N02412 Erythranthe guttata HOM05D007263 ORTHO05D009187 1.7e-45 186.8 176 58.5
Dinv32124 Davidia involucrata HOM05D007263 ORTHO05D009187 3.8e-45 185.7 210 50.5
Cc01_g07450 Coffea canephora HOM05D007263 ORTHO05D009187 1.9e-44 183.3 205 51.2
MBI19_g09308_MAGBIO Magnolia biondii HOM05D007263 ORTHO05D009187 1.9e-44 183.3 202 51.5
unitig_8.g2984 Utricularia gibba HOM05D007263 ORTHO05D009187 4.2e-44 182.2 173 54.9
GSVIVG01037444001 Vitis vinifera HOM05D000101 ORTHO05D000089 5.4e-44 181.8 194 51.0
Thecc.09G263800 Theobroma cacao HOM05D007263 ORTHO05D009187 7.1e-44 181.4 215 49.8
PGR119G0910 Punica granatum HOM05D007263 ORTHO05D009187 9.2e-44 181.0 197 53.8
Carub.0004s0057 Capsella rubella HOM05D007263 ORTHO05D009187 3.5e-43 179.1 135 62.2
Glyma.20G058100 Glycine max HOM05D007263 ORTHO05D009187 6.0e-43 178.3 172 54.1
AL4G10720 Arabidopsis lyrata HOM05D007263 ORTHO05D009187 7.8e-43 177.9 135 63.0
Rhsim01G0197200 Rhododendron simsii HOM05D007263 ORTHO05D009187 1.3e-42 177.2 181 55.2
ATR0068G111 Amborella trichopoda HOM05D007263 ORTHO05D009187 3.9e-42 175.6 165 52.7
AT2G21530 Arabidopsis thaliana HOM05D007263 ORTHO05D009187 3.9e-42 175.6 135 62.2
Manes.09G111800 Manihot esculenta HOM05D007263 ORTHO05D009187 8.7e-42 174.5 212 47.6
CDE07G0519 Ceratophyllum demersum HOM05D007263 ORTHO05D009187 1.1e-41 174.1 205 48.8
Nn6g32384 Nelumbo nucifera HOM05D007263 ORTHO05D009187 1.1e-41 174.1 144 59.0
CANSAT54G3001 Cannabis sativa HOM05D007263 ORTHO05D009187 4.3e-41 172.2 197 50.3
CARHR112460 Cardamine hirsuta HOM05D007263 ORTHO05D009187 4.3e-41 172.2 194 49.0
TAR623G1137 Trochodendron aralioides HOM05D007263 ORTHO05D009187 4.3e-41 172.2 191 48.7
FvH4_3g27180 Fragaria vesca HOM05D007263 ORTHO05D009187 5.6e-41 171.8 202 50.0
Cfa010246 Carpinus fangiana HOM05D007263 ORTHO05D009187 7.3e-41 171.4 203 49.3
Sp4g00690 Schrenkiella parvula HOM05D007263 ORTHO05D009187 7.3e-41 171.4 137 61.3
FAN16G1710 Fragaria x ananassa HOM05D007263 ORTHO05D009187 1.3e-40 170.6 202 49.5
Phvul.L004437 Phaseolus vulgaris HOM05D007263 ORTHO05D009187 1.3e-40 170.6 144 59.0
Lj6g0015831 Lotus japonicus HOM05D007263 ORTHO05D009187 1.6e-40 170.2 135 63.0
PSO339G3146 Papaver somniferum HOM05D007263 ORTHO05D009187 1.6e-40 170.2 144 60.4
PSO384G0367 Papaver somniferum HOM05D007263 ORTHO05D009187 1.6e-40 170.2 144 60.4
VMungo0540G1942 Vigna mungo HOM05D007263 ORTHO05D009187 1.6e-40 170.2 121 66.1
RcHm_v2.0_Chr5g0049851 Rosa chinensis HOM05D007263 ORTHO05D009187 2.1e-40 169.9 125 65.6
Gohir.D05G078200 Gossypium hirsutum HOM05D007263 ORTHO05D009187 2.8e-40 169.5 216 48.1
Gorai.009G079700 Gossypium raimondii HOM05D007263 ORTHO05D009187 2.8e-40 169.5 216 48.1
Thhalv10000320m.g Eutrema salsugineum HOM05D007263 ORTHO05D009187 3.6e-40 169.1 166 54.2
Ciclev10016536m.g Citrus clementina HOM05D007263 ORTHO05D009187 4.8e-40 168.7 199 48.7
CSS0014161 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 1.4e-39 167.2 159 54.7
Gohir.A05G075400 Gossypium hirsutum HOM05D007263 ORTHO05D009187 1.8e-39 166.8 216 47.7
Duzib168G0238 Durio zibethinus HOM05D007263 ORTHO05D009187 3.1e-39 166.0 216 48.1
Medtr3g079520 Medicago truncatula HOM05D007263 ORTHO05D009187 4.0e-39 165.6 152 56.6
Medtr3g479600 Medicago truncatula HOM05D007263 ORTHO05D009187 4.0e-39 165.6 152 56.6
Sabra09G0122700 Salix brachista HOM05D007263 ORTHO05D009187 4.0e-39 165.6 218 44.5
FAN11G0122 Fragaria x ananassa HOM05D007263 ORTHO05D009187 5.3e-39 165.2 208 48.6
Eucgr.J00617 Eucalyptus grandis HOM05D007263 ORTHO05D009187 6.9e-39 164.9 223 43.9
HanXRQChr03g0085111 Helianthus annuus HOM05D007263 ORTHO05D009187 6.9e-39 164.9 214 49.5
MD11G1181300 Malus domestica HOM05D007263 ORTHO05D009187 6.9e-39 164.9 123 63.4
Psat5g112360 Pisum sativum HOM05D007263 ORTHO05D009187 6.9e-39 164.9 181 52.5
BcaC07g41154 Brassica carinata HOM05D007263 ORTHO05D009187 9.0e-39 164.5 121 65.3
BolC8t51703H Brassica oleracea HOM05D007263 ORTHO05D009187 9.0e-39 164.5 121 65.3
ECA240G3643 Erigeron canadensis HOM05D000684 ORTHO05D000688 9.0e-39 164.5 142 60.6
Hma1.2p1_0994F.1_g245580 Hydrangea macrophylla HOM05D007263 ORTHO05D009187 9.0e-39 164.5 199 46.2
A09p58160 Brassica napus HOM05D007263 ORTHO05D009187 1.2e-38 164.1 212 45.8
BraA09t41205Z Brassica rapa HOM05D007263 ORTHO05D009187 1.2e-38 164.1 212 45.8
COL.COLO4_25292 Corchorus olitorius HOM05D007263 ORTHO05D009187 2.0e-38 163.3 206 45.6
Atru.chr3.2913 Acer truncatum HOM05D007263 ORTHO05D009187 2.6e-38 162.9 202 48.0
CiPaw.13G127300 Carya illinoinensis HOM05D007263 ORTHO05D009187 2.6e-38 162.9 141 59.6
SGA_v2.0_scaffold8G04511 Striga asiatica HOM05D000563 ORTHO05D000536 4.4e-38 162.2 192 52.1
vmacro23061 Vaccinium macrocarpon HOM05D007263 ORTHO05D009187 5.8e-38 161.8 126 65.9
Ca_16255_v3 Cicer arietinum L. HOM05D007263 ORTHO05D009187 7.6e-38 161.4 152 54.6
Prupe.6G154100 Prunus persica HOM05D007263 ORTHO05D009187 1.3e-37 160.6 214 44.9
Lsat_1_v5_gn_6_85860 Lactuca sativa HOM05D007263 ORTHO05D009187 1.7e-37 160.2 211 46.9
THA.LOC104816966 Tarenaya hassleriana HOM05D007263 ORTHO05D009187 1.7e-37 160.2 159 54.1
Nitab4.5_0000428g0130 Nicotiana tabacum HOM05D007263 ORTHO05D009187 3.8e-37 159.1 228 44.3
Aa31LG7G14990 Aethionema arabicum HOM05D007263 ORTHO05D009187 4.9e-37 158.7 139 57.6
DCAR_028386 Daucus carota HOM05D007263 ORTHO05D009187 6.4e-37 158.3 217 45.6
EL10Ac7g16235 Beta vulgaris HOM05D007263 ORTHO05D009187 1.1e-36 157.5 188 48.9
Sed0004996 Sechium edule HOM05D007263 ORTHO05D009187 1.4e-36 157.1 130 59.2
AUR62001600 Chenopodium quinoa HOM05D007263 ORTHO05D009187 3.2e-36 156.0 199 46.2
Peaxi162Scf00342g00119 Petunia axillaris HOM05D007263 ORTHO05D009187 5.4e-36 155.2 200 46.5
AUR62020179 Chenopodium quinoa HOM05D007263 ORTHO05D009187 1.2e-35 154.1 199 45.7
FAN25G1860 Fragaria x ananassa HOM05D007263 ORTHO05D009187 2.7e-35 152.9 233 42.9
Sc06g0006180 Simmondsia chinensis HOM05D007263 ORTHO05D009187 3.5e-35 152.5 159 50.9
ClCG02G024290 Citrullus lanatus HOM05D007263 ORTHO05D009187 4.6e-35 152.1 133 57.1
SMO271G0152 Selaginella moellendorffii HOM05D007263 ORTHO05D009187 3.0e-34 149.4 119 55.5
Hund18825 Selenicereus undatus HOM05D007263 ORTHO05D009187 3.0e-34 149.4 182 45.6
CSS0024406 Camellia sinensis var. sinensis HOM05D007263 ORTHO05D009187 3.9e-34 149.1 151 53.0
Potri.009G156700 Populus trichocarpa HOM05D007263 ORTHO05D009187 6.6e-34 148.3 190 44.2
Pp3c1_27160 Physcomitrium patens HOM05D007263 ORTHO05D009187 8.7e-34 147.9 134 51.5
QL01p020523 Quercus lobata HOM05D007263 ORTHO05D009187 1.1e-33 147.5 192 46.9
Zm00001eb163720 Zea mays HOM05D007263 ORTHO05D009187 4.3e-33 145.6 151 48.3
Lalb_Chr14g0363361 Lupinus albus HOM05D007263 ORTHO05D009187 7.3e-33 144.8 129 54.3
Os11g0127800 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.3e-32 144.1 149 49.7
Pp3c2_15500 Physcomitrium patens HOM05D007263 ORTHO05D009187 1.1e-31 141.0 115 53.0
Nitab4.5_0002300g0100 Nicotiana tabacum HOM05D007263 ORTHO05D009187 3.1e-31 139.4 169 50.3
Mapoly0061s0077 Marchantia polymorpha HOM05D007263 ORTHO05D009187 2.0e-30 136.7 134 47.0
MELO3C014714.2 Cucumis melo HOM05D007263 ORTHO05D009187 7.6e-30 134.8 104 63.5
TPR.G9589 Trifolium pratense HOM05D007263 ORTHO05D009187 4.9e-29 132.1 149 47.7
Haze_23636 Corylus avellana HOM05D007263 ORTHO05D009187 1.3e-24 117.5 197 41.1
arahy.Tifrunner.gnm1.ann1.TU72Q6 Arachis hypogaea HOM05D007263 ORTHO05D009187 4.8e-24 115.5 144 44.4
CsaV3_4G017420 Cucumis sativus L. HOM05D007263 ORTHO05D009187 3.1e-23 112.8 136 48.5
arahy.Tifrunner.gnm1.ann1.S2FUN4 Arachis hypogaea HOM05D007263 ORTHO05D009187 6.9e-23 111.7 142 43.7
Potri.009G156900 Populus trichocarpa HOM05D007263 ORTHO05D009187 8.4e-21 104.8 93 60.2
Os12g0124000 Oryza sativa ssp. japonica HOM05D007263 ORTHO05D009187 1.0e-18 97.8 147 36.7
MCO16G316 Micromonas commoda HOM05D007263 ORTHO05D009187 1.8e-18 97.1 113 41.6
Cpa.g.sc103.87 Carica papaya HOM05D007263 ORTHO05D009187 3.0e-18 96.3 145 44.1
Cpa.g.c47634 Carica papaya HOM05D007263 ORTHO05D009187 1.5e-17 94.0 114 49.1
SEGI_12571 Sequoiadendron giganteum HOM05D007263 ORTHO05D009187 1.6e-16 90.5 73 58.9
Cre12.g534450 Chlamydomonas reinhardtii HOM05D007263 ORTHO05D009187 8.4e-13 78.2 126 34.9
PRCOL_00003243 Prasinoderma coloniale HOM05D007263 ORTHO05D009187 7.4e-09 65.1 80 40.0
Sabra04G0132300 Salix brachista HOM05D000052 ORTHO05D001127 8.2e-08 61.6 56 53.6


User provided reference genes

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