Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01602 Striga asiatica HOM05D003994 ORTHO05D004957 9.7e-124 446.8 224 100.0
SGA_v2.0_scaffold16G07672 Striga asiatica HOM05D003994 ORTHO05D004957 4.1e-122 441.4 224 98.2
Migut.N01321 Erythranthe guttata HOM05D003994 ORTHO05D004957 1.8e-106 389.4 224 83.5
MSTRG.27636 Avicennia marina HOM05D003994 ORTHO05D004957 1.0e-101 373.6 224 81.7
Nitab4.5_0001225g0220 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.6e-97 359.8 224 75.4
Nitab4.5_0001583g0200 Nicotiana tabacum HOM05D003994 ORTHO05D004957 1.6e-97 359.8 224 75.4
Solyc08g005985.1 Solanum lycopersicum HOM05D003994 ORTHO05D004957 1.0e-96 357.1 224 75.0
Sopen08g001960 Solanum pennellii HOM05D003994 ORTHO05D004957 1.0e-96 357.1 224 75.0
Oeu005708.1 Olea europaea HOM05D003994 ORTHO05D004957 2.2e-96 355.9 209 82.3
PGSC0003DMG401014852 Solanum tuberosum HOM05D003994 ORTHO05D004957 2.2e-96 355.9 224 74.6
Oeu061402.1 Olea europaea HOM05D003994 ORTHO05D004957 2.9e-96 355.5 207 82.1
ECA234G2975 Erigeron canadensis HOM05D003994 ORTHO05D004957 3.2e-95 352.1 222 76.1
HanXRQChr16g0514761 Helianthus annuus HOM05D003994 ORTHO05D004957 5.5e-95 351.3 222 76.1
HanXRQChr10g0295951 Helianthus annuus HOM05D003994 ORTHO05D004957 7.2e-95 350.9 223 74.9
CAN.G940.12 Capsicum annuum HOM05D003994 ORTHO05D004957 9.4e-95 350.5 224 73.7
CSS0048612 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 4.7e-94 348.2 223 74.0
Lsat_1_v5_gn_8_167161 Lactuca sativa HOM05D003994 ORTHO05D004957 4.7e-94 348.2 222 74.8
Dinv41938 Davidia involucrata HOM05D003994 ORTHO05D004957 1.8e-93 346.3 223 76.2
CSS0002177 Camellia sinensis var. sinensis HOM05D003994 ORTHO05D004957 5.2e-93 344.7 223 73.1
Rhsim12G0069500 Rhododendron simsii HOM05D003994 ORTHO05D004957 2.0e-92 342.8 222 74.3
CANSAT56G2628 Cannabis sativa HOM05D003994 ORTHO05D004957 4.4e-92 341.7 217 74.7
DCAR_025322 Daucus carota HOM05D003994 ORTHO05D004957 7.5e-92 340.9 215 77.2
Hund16215 Selenicereus undatus HOM05D003994 ORTHO05D004957 7.5e-92 340.9 224 73.7
Actinidia00624 Actinidia chinensis HOM05D003994 ORTHO05D004957 1.3e-91 340.1 237 70.5
PGR042G1915 Punica granatum HOM05D003994 ORTHO05D004957 1.3e-91 340.1 218 73.4
Hma1.2p1_0163F.1_g072490 Hydrangea macrophylla HOM05D003994 ORTHO05D004957 1.7e-91 339.7 219 75.3
Haze_02136 Corylus avellana HOM05D003994 ORTHO05D004957 2.8e-91 339.0 220 72.3
Cfa005247 Carpinus fangiana HOM05D003994 ORTHO05D004957 4.9e-91 338.2 220 71.4
Rhsim05G0056700 Rhododendron simsii HOM05D003994 ORTHO05D004957 4.9e-91 338.2 223 73.1
Ah.01g023020 Amaranthus hybridus HOM05D003994 ORTHO05D004957 8.3e-91 337.4 226 71.7
CANSAT25G2109 Cannabis sativa HOM05D003994 ORTHO05D004957 1.4e-90 336.7 218 72.5
TWI79G1032 Tripterygium wilfordii HOM05D003994 ORTHO05D004957 1.4e-90 336.7 225 71.6
A08p24160 Brassica napus HOM05D003994 ORTHO05D004957 1.8e-90 336.3 220 70.5
BcaC01g00237 Brassica carinata HOM05D003994 ORTHO05D004957 2.4e-90 335.9 219 71.2
AT4G38570 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 3.1e-90 335.5 219 70.8
SalBow3G1772 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.4e-90 334.7 204 77.5
CiPaw.06G111900 Carya illinoinensis HOM05D003994 ORTHO05D004957 7.0e-90 334.3 223 73.1
Nn3g20343 Nelumbo nucifera HOM05D003994 ORTHO05D004957 7.0e-90 334.3 218 72.9
BraA08t34371Z Brassica rapa HOM05D003994 ORTHO05D004957 9.2e-90 334.0 220 70.0
Cc09_g07710 Coffea canephora HOM05D003994 ORTHO05D004957 1.2e-89 333.6 219 73.5
Aa31LG6G16590 Aethionema arabicum HOM05D003994 ORTHO05D004957 1.6e-89 333.2 219 71.2
Manes.04G058800 Manihot esculenta HOM05D003994 ORTHO05D004957 2.0e-89 332.8 224 70.5
Sp5g23020 Schrenkiella parvula HOM05D003994 ORTHO05D004957 4.5e-89 331.6 221 69.7
A07p32200 Brassica napus HOM05D003994 ORTHO05D004957 5.9e-89 331.3 221 69.7
BcaB03g15393 Brassica carinata HOM05D003994 ORTHO05D004957 7.7e-89 330.9 221 70.1
Thhalv10026160m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 7.7e-89 330.9 217 71.0
AL2G26920 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 1.0e-88 330.5 221 70.1
Carub.0002s1448 Capsella rubella HOM05D003994 ORTHO05D004957 1.7e-88 329.7 221 70.1
Thhalv10019092m.g Eutrema salsugineum HOM05D003994 ORTHO05D004957 1.7e-88 329.7 221 70.1
CARHR060640 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.3e-88 329.3 221 70.6
Sp7g37200 Schrenkiella parvula HOM05D003994 ORTHO05D004957 2.3e-88 329.3 219 70.3
THA.LOC104824762 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 2.3e-88 329.3 220 70.9
AT1G68000 Arabidopsis thaliana HOM05D003994 ORTHO05D004957 2.9e-88 328.9 221 69.7
BcaB03g15140 Brassica carinata HOM05D003994 ORTHO05D004957 2.9e-88 328.9 220 69.5
BolC2t08504H Brassica oleracea HOM05D003994 ORTHO05D004957 2.9e-88 328.9 221 69.2
RcHm_v2.0_Chr7g0224781 Rosa chinensis HOM05D003994 ORTHO05D004957 5.0e-88 328.2 222 69.4
Atru.chr5.3321 Acer truncatum HOM05D003994 ORTHO05D004957 6.6e-88 327.8 223 70.0
BcaB05g24329 Brassica carinata HOM05D003994 ORTHO05D004957 6.6e-88 327.8 221 69.2
BcaC03g14900 Brassica carinata HOM05D003994 ORTHO05D004957 6.6e-88 327.8 221 69.2
CiPaw.05G082400 Carya illinoinensis HOM05D003994 ORTHO05D004957 6.6e-88 327.8 217 71.4
C06p37970 Brassica napus HOM05D003994 ORTHO05D004957 8.6e-88 327.4 221 69.2
Prupe.7G263800 Prunus persica HOM05D003994 ORTHO05D004957 1.1e-87 327.0 222 69.4
BcaC08g46004 Brassica carinata HOM05D003994 ORTHO05D004957 1.9e-87 326.2 221 69.2
MD05G1122300 Malus domestica HOM05D003994 ORTHO05D004957 2.5e-87 325.9 222 69.4
Sc08g0002910 Simmondsia chinensis HOM05D003994 ORTHO05D004957 3.3e-87 325.5 223 70.0
BolC6t38896H Brassica oleracea HOM05D003994 ORTHO05D004957 4.3e-87 325.1 221 68.8
FvH4_2g13710 Fragaria vesca HOM05D003994 ORTHO05D004957 7.3e-87 324.3 221 69.7
Gorai.002G198300 Gossypium raimondii HOM05D003994 ORTHO05D004957 7.3e-87 324.3 220 69.1
GSVIVG01024019001 Vitis vinifera HOM05D003994 ORTHO05D004957 7.3e-87 324.3 214 71.5
Eucgr.I01421 Eucalyptus grandis HOM05D003994 ORTHO05D004957 9.5e-87 323.9 219 68.9
FAN20G1157 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.2e-86 323.6 221 69.7
TAR376G0382 Trochodendron aralioides HOM05D003994 ORTHO05D004957 1.6e-86 323.2 223 68.2
Duzib248G0985 Durio zibethinus HOM05D003994 ORTHO05D004957 2.1e-86 322.8 220 68.2
Duzib052G1000 Durio zibethinus HOM05D003994 ORTHO05D004957 2.8e-86 322.4 220 68.2
FvH4_2g14000 Fragaria vesca HOM05D003994 ORTHO05D004957 3.6e-86 322.0 221 69.2
AUR62037910 Chenopodium quinoa HOM05D003994 ORTHO05D004957 4.7e-86 321.6 212 72.2
COL.COLO4_17341 Corchorus olitorius HOM05D003994 ORTHO05D004957 6.1e-86 321.2 220 69.5
PSO017G2109 Papaver somniferum HOM05D003994 ORTHO05D004957 6.1e-86 321.2 221 70.1
PSO675G5603 Papaver somniferum HOM05D003994 ORTHO05D004957 6.1e-86 321.2 221 70.1
Phvul.011G036100 Phaseolus vulgaris HOM05D003994 ORTHO05D004957 8.0e-86 320.9 217 69.6
Thecc.02G059800 Theobroma cacao HOM05D003994 ORTHO05D004957 8.0e-86 320.9 220 69.1
TAR629G0599 Trochodendron aralioides HOM05D003994 ORTHO05D004957 8.0e-86 320.9 223 68.6
SGA_v2.0_scaffold243G44305 Striga asiatica HOM05D003994 ORTHO05D004957 1.0e-85 320.5 180 90.0
unitig_749.g13986 Utricularia gibba HOM05D003994 ORTHO05D004957 1.0e-85 320.5 202 75.7
vmacro17345 Vaccinium macrocarpon HOM05D003994 ORTHO05D004957 1.0e-85 320.5 202 76.2
Gohir.D01G159750 Gossypium hirsutum HOM05D003994 ORTHO05D004957 1.4e-85 320.1 220 68.6
Lalb_Chr01g0001921 Lupinus albus HOM05D003994 ORTHO05D004957 1.4e-85 320.1 218 70.2
Potri.004G175600 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.4e-85 320.1 217 71.0
FAN27G1606 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.8e-85 319.7 221 69.2
Sed0021478 Sechium edule HOM05D003994 ORTHO05D004957 3.0e-85 318.9 225 68.0
CsaV3_2G016120 Cucumis sativus L. HOM05D003994 ORTHO05D004957 4.0e-85 318.5 225 68.4
Glyma.11G091200 Glycine max HOM05D003994 ORTHO05D004957 5.2e-85 318.2 218 70.2
Gohir.A01G168900 Gossypium hirsutum HOM05D003994 ORTHO05D004957 5.2e-85 318.2 220 67.7
Potri.009G135500 Populus trichocarpa HOM05D003994 ORTHO05D004957 1.2e-84 317.0 218 69.7
Lalb_Chr03g0025191 Lupinus albus HOM05D003994 ORTHO05D004957 1.5e-84 316.6 217 68.7
Lalb_Chr19g0139051 Lupinus albus HOM05D003994 ORTHO05D004957 1.5e-84 316.6 219 70.8
Sed0013006 Sechium edule HOM05D003994 ORTHO05D004957 2.0e-84 316.2 225 66.7
EL10Ac9g21377 Beta vulgaris HOM05D003994 ORTHO05D004957 2.6e-84 315.8 206 72.8
QL11p050712 Quercus lobata HOM05D003994 ORTHO05D004957 3.4e-84 315.5 219 69.9
TPR.G38794 Trifolium pratense HOM05D003994 ORTHO05D004957 4.4e-84 315.1 217 68.7
TPR.G39214 Trifolium pratense HOM05D003994 ORTHO05D004957 5.7e-84 314.7 217 68.2
Medtr4g073020 Medicago truncatula HOM05D003994 ORTHO05D004957 1.7e-83 313.2 217 67.7
Ca_19074_v3 Cicer arietinum L. HOM05D003994 ORTHO05D004957 3.7e-83 312.0 218 67.0
Aqoxy4G01712 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 4.9e-83 311.6 222 65.8
Aqoxy1G00146 Aquilegia oxysepala HOM05D003994 ORTHO05D004957 1.8e-82 309.7 222 65.8
C03p77150 Brassica napus HOM05D003994 ORTHO05D004957 5.4e-82 308.1 199 72.9
Carub.0007s0044 Capsella rubella HOM05D003994 ORTHO05D004957 2.0e-81 306.2 218 67.0
C02p23750 Brassica napus HOM05D003994 ORTHO05D004957 4.6e-81 305.1 205 70.2
MD10G1124800 Malus domestica HOM05D003994 ORTHO05D004957 4.6e-81 305.1 206 69.4
AUR62040162 Chenopodium quinoa HOM05D003994 ORTHO05D004957 7.8e-81 304.3 223 65.0
CARHR294300 Cardamine hirsuta HOM05D003994 ORTHO05D004957 2.3e-80 302.8 201 70.6
A02p14650 Brassica napus HOM05D003994 ORTHO05D004957 3.3e-79 298.9 208 68.8
BraA02t06532Z Brassica rapa HOM05D003994 ORTHO05D004957 3.3e-79 298.9 208 68.8
VMungo1127G1708 Vigna mungo HOM05D003994 ORTHO05D004957 2.8e-78 295.8 202 68.3
Lsat_1_v5_gn_5_108021 Lactuca sativa HOM05D003994 ORTHO05D004957 8.0e-78 294.3 186 77.4
ClCG02G011950 Citrullus lanatus HOM05D003994 ORTHO05D004957 1.8e-77 293.1 240 62.1
Dinv43046 Davidia involucrata HOM05D003225 ORTHO05D003818 2.3e-77 292.7 194 75.3
A07p34510 Brassica napus HOM05D003994 ORTHO05D004957 4.0e-77 292.0 201 70.1
Lj3g0010701 Lotus japonicus HOM05D003994 ORTHO05D004957 1.2e-76 290.4 205 67.8
FAN24G3352 Fragaria x ananassa HOM05D003994 ORTHO05D004957 2.0e-76 289.7 221 62.9
PGR142G1861 Punica granatum HOM05D003994 ORTHO05D004957 2.6e-76 289.3 224 66.5
Psat7g138440 Pisum sativum HOM05D003994 ORTHO05D004957 4.4e-76 288.5 203 66.5
FAN15G2236 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.5e-76 287.7 221 62.9
Glyma.12G033500 Glycine max HOM05D003994 ORTHO05D004957 1.3e-75 287.0 199 68.3
MELO3C020821.2 Cucumis melo HOM05D003994 ORTHO05D004957 2.2e-75 286.2 228 62.3
Sabra04G0117500 Salix brachista HOM05D003994 ORTHO05D004957 8.3e-75 284.3 217 63.1
Os02g0123600 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D004957 1.1e-74 283.9 224 60.7
ATR0307G066 Amborella trichopoda HOM05D003994 ORTHO05D004957 2.4e-74 282.7 223 65.0
Zm00001eb274200 Zea mays HOM05D003994 ORTHO05D004957 2.4e-74 282.7 214 61.7
SalBow3G2361 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.4e-74 281.6 232 61.6
FAN24G0721 Fragaria x ananassa HOM05D003994 ORTHO05D004957 4.6e-73 278.5 257 55.6
Sabra09G0105200 Salix brachista HOM05D003994 ORTHO05D004957 1.7e-72 276.6 239 58.2
Peaxi162Scf00045g00144 Petunia axillaris HOM05D003994 ORTHO05D004957 9.5e-71 270.8 224 58.9
CDE05G3005 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 1.2e-70 270.4 223 62.3
HPP92_004513 Vanilla planifolia HOM05D003994 ORTHO05D004957 1.2e-70 270.4 208 62.0
EL10Ac7g18178 Beta vulgaris HOM05D003994 ORTHO05D004957 3.1e-69 265.8 223 60.5
arahy.Tifrunner.gnm1.ann1.U045QQ Arachis hypogaea HOM05D003994 ORTHO05D004957 6.4e-67 258.1 173 71.1
arahy.Tifrunner.gnm1.ann1.VZUK08 Arachis hypogaea HOM05D003994 ORTHO05D004957 7.1e-66 254.6 211 60.7
MBI02_g21865_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 2.1e-65 253.1 222 58.1
Lj5C178T13 Lonicera japonica HOM05D003994 ORTHO05D004957 4.6e-65 251.9 159 76.7
SalBow5G5214 Salvia bowleyana HOM05D003994 ORTHO05D004957 5.1e-64 248.4 187 67.4
arahy.Tifrunner.gnm1.ann1.L07Y4L Arachis hypogaea HOM05D003994 ORTHO05D004957 3.6e-62 242.3 204 59.8
C03p25490 Brassica napus HOM05D003994 ORTHO05D004957 2.3e-61 239.6 157 72.0
Mapoly0071s0023 Marchantia polymorpha HOM05D003994 ORTHO05D004957 1.5e-60 236.9 211 58.3
SHI32381 Sapria himalayana HOM05D003994 ORTHO05D004957 4.4e-60 235.3 219 53.9
Pp3c4_10100 Physcomitrium patens HOM05D003994 ORTHO05D004957 9.9e-60 234.2 218 56.9
CDE05G1389 Ceratophyllum demersum HOM05D003994 ORTHO05D004957 3.7e-59 232.3 223 56.1
SMO112G0024 Selaginella moellendorffii HOM05D003994 ORTHO05D004957 6.4e-59 231.5 211 57.3
Zm00001eb389940 Zea mays HOM05D003994 ORTHO05D004957 8.4e-59 231.1 214 54.7
Pp3c3_18340 Physcomitrium patens HOM05D003994 ORTHO05D004957 1.9e-58 229.9 220 55.5
BolC3t19967H Brassica oleracea HOM05D003994 ORTHO05D004957 3.2e-58 229.2 201 57.2
CBR_g32608 Chara braunii HOM05D003994 ORTHO05D004957 4.3e-55 218.8 211 56.4
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 2.8e-54 216.1 171 67.8
Cpa.g.sc37.130 Carica papaya HOM05D003994 ORTHO05D004957 4.0e-53 212.2 149 68.5
FAN15G2231 Fragaria x ananassa HOM05D003994 ORTHO05D004957 1.9e-47 193.4 157 60.5
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 6.4e-43 178.3 202 54.5
Cre10.g419800 Chlamydomonas reinhardtii HOM05D003994 ORTHO05D004957 1.1e-42 177.6 234 46.2
BcaC08g46226 Brassica carinata HOM05D003994 ORTHO05D004957 2.1e-38 163.3 113 69.9
MCO09G063 Micromonas commoda HOM05D003994 ORTHO05D004957 1.2e-36 157.5 237 41.4
AL7G10460 Arabidopsis lyrata HOM05D003994 ORTHO05D004957 2.2e-35 153.3 102 67.6
PRCOL_00004558 Prasinoderma coloniale HOM05D003994 ORTHO05D004957 4.2e-34 149.1 215 40.5
arahy.Tifrunner.gnm1.ann1.NCR277 Arachis hypogaea HOM05D003994 ORTHO05D004957 1.6e-33 147.1 109 61.5
arahy.Tifrunner.gnm1.ann1.8L0F4Y Arachis hypogaea HOM05D003994 ORTHO05D004957 4.6e-33 145.6 96 74.0
MBI11_g13142_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 3.3e-31 139.4 230 38.3
BcaNung05108 Brassica carinata HOM05D003994 ORTHO05D004957 1.2e-28 131.0 117 59.0
Cfa022653 Carpinus fangiana HOM05D003994 ORTHO05D004957 1.3e-27 127.5 160 40.0
FAN27G1783 Fragaria x ananassa HOM05D003994 ORTHO05D004957 7.1e-26 121.7 114 56.1
RcHm_v2.0_Chr5g0023251 Rosa chinensis HOM05D003994 ORTHO05D004957 1.6e-25 120.6 78 74.4
Pp3c10_9870 Physcomitrium patens HOM05D003994 ORTHO05D310819 2.5e-18 96.7 203 31.0
MD08G1201300 Malus domestica HOM05D003994 ORTHO05D036609 2.1e-17 93.6 74 58.1
MD16G1270800 Malus domestica HOM05D003994 ORTHO05D036609 5.7e-15 85.5 78 55.1
MBI11_g33763_MAGBIO Magnolia biondii HOM05D003994 ORTHO05D004957 1.7e-11 73.9 70 48.6
THA.LOC104807810 Tarenaya hassleriana HOM05D003994 ORTHO05D004957 3.8e-11 72.8 107 43.0
CBR_g3510 Chara braunii HOM05D003994 ORTHO05D043992 2.2e-06 57.0 70 42.9
Os06g0492000 Oryza sativa ssp. japonica HOM05D003994 ORTHO05D036609 2.2e-06 57.0 40 62.5


User provided reference genes

Program Settings