Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 6.4e-114 414.1 205 100.0
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 7.9e-72 274.2 211 66.4
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 2.1e-69 266.2 208 65.9
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 3.1e-68 262.3 207 64.7
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.0e-66 257.3 211 63.0
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 2.3e-63 246.1 210 61.4
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 2.3e-63 246.1 211 60.7
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 4.8e-61 238.4 216 58.8
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 4.8e-61 238.4 207 61.4
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 6.3e-61 238.0 219 58.4
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 4.1e-60 235.3 211 56.9
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 6.9e-60 234.6 202 58.4
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 2.6e-59 232.6 205 58.5
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 3.4e-59 232.3 191 61.3
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 5.9e-59 231.5 219 56.2
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 7.6e-59 231.1 202 57.4
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.8e-58 228.8 219 57.1
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 5.0e-58 228.4 217 55.8
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 5.0e-58 228.4 216 56.0
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 6.5e-58 228.0 219 54.8
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 5.5e-57 224.9 217 55.8
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 9.3e-57 224.2 217 55.3
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.6e-56 223.4 224 54.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 1.6e-56 223.4 217 54.4
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.1e-56 223.0 203 56.7
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 3.6e-56 222.2 216 55.6
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.6e-56 222.2 219 55.3
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 3.6e-56 222.2 219 55.3
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 4.6e-56 221.9 219 53.0
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 4.6e-56 221.9 223 51.6
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.0e-55 220.7 217 54.4
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.0e-55 220.7 217 54.4
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.3e-55 220.3 222 52.7
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 1.8e-55 219.9 221 52.9
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 2.3e-55 219.5 209 55.0
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.3e-55 219.5 214 51.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.0e-55 219.2 220 53.6
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.0e-55 219.2 222 52.3
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 3.9e-55 218.8 214 51.9
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 6.7e-55 218.0 218 54.1
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.7e-55 218.0 222 52.3
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 8.7e-55 217.6 222 52.3
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 1.9e-54 216.5 212 55.2
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 7.4e-54 214.5 213 54.9
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 9.7e-54 214.2 218 53.2
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.6e-53 213.4 218 53.2
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 2.2e-53 213.0 217 52.5
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.7e-53 212.2 208 52.9
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 3.7e-53 212.2 209 52.6
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 4.8e-53 211.8 213 52.1
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 8.2e-53 211.1 223 50.7
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 8.2e-53 211.1 215 48.8
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 8.2e-53 211.1 209 52.2
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.4e-52 210.3 204 53.4
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.4e-52 210.3 218 52.3
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 1.8e-52 209.9 203 55.7
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 2.4e-52 209.5 221 49.8
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 2.4e-52 209.5 204 53.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.4e-52 209.5 217 51.6
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.4e-52 209.5 206 51.9
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.3e-52 208.4 205 52.2
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 5.3e-52 208.4 219 51.1
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 5.3e-52 208.4 227 49.8
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 6.9e-52 208.0 202 54.0
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.9e-52 208.0 217 51.2
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 9.1e-52 207.6 210 53.3
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.2e-51 207.2 210 51.9
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.2e-51 207.2 210 53.3
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.5e-51 206.8 210 52.9
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.5e-51 206.8 208 53.8
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.0e-51 206.5 219 50.7
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 2.0e-51 206.5 216 51.9
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.0e-51 206.5 210 53.3
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 2.0e-51 206.5 207 54.6
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.6e-51 206.1 211 51.2
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 2.6e-51 206.1 166 57.8
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 2.6e-51 206.1 203 50.7
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 3.4e-51 205.7 198 52.0
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 4.5e-51 205.3 198 52.0
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 4.5e-51 205.3 198 52.0
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 4.5e-51 205.3 198 52.0
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 7.7e-51 204.5 190 56.8
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 7.7e-51 204.5 220 51.4
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 7.7e-51 204.5 218 50.9
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 7.7e-51 204.5 221 50.7
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 7.7e-51 204.5 225 48.9
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 7.7e-51 204.5 225 48.9
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 7.7e-51 204.5 206 50.5
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 1.0e-50 204.1 200 53.5
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.0e-50 204.1 200 53.0
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.3e-50 203.8 200 53.0
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 1.3e-50 203.8 199 54.3
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.9e-50 202.6 206 53.4
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 2.9e-50 202.6 209 52.2
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 3.8e-50 202.2 215 51.2
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.8e-50 202.2 217 48.8
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.8e-50 202.2 211 51.2
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 5.0e-50 201.8 202 54.0
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 5.0e-50 201.8 207 53.6
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.0e-50 201.8 203 52.2
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 5.0e-50 201.8 161 61.5
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 8.5e-50 201.1 220 47.7
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.9e-49 199.9 180 55.6
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.9e-49 199.9 197 50.8
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 2.5e-49 199.5 218 50.9
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 3.2e-49 199.1 217 49.3
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 5.5e-49 198.4 218 51.4
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 7.2e-49 198.0 173 54.3
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 7.2e-49 198.0 180 55.0
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.2e-48 197.2 206 51.0
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.6e-48 196.8 199 49.2
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.6e-48 196.8 212 48.6
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 2.7e-48 196.1 213 50.2
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 2.7e-48 196.1 214 48.6
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 3.6e-48 195.7 211 50.2
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 4.6e-48 195.3 198 51.5
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 7.9e-48 194.5 212 48.6
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 7.9e-48 194.5 219 48.9
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.0e-47 194.1 163 57.7
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 1.4e-47 193.7 176 55.1
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.8e-47 193.4 222 48.2
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 3.9e-47 192.2 217 48.4
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.1e-46 190.7 212 50.9
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 2.0e-46 189.9 205 51.2
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 2.0e-46 189.9 205 51.2
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.0e-46 189.9 134 64.9
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 5.7e-46 188.3 176 52.8
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.3e-45 187.2 218 48.2
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.3e-45 187.2 137 63.5
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.7e-45 186.8 210 51.0
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 2.8e-45 186.0 220 48.2
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.0e-43 179.9 166 51.8
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.0e-43 179.9 166 51.8
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 3.4e-43 179.1 162 55.6
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 5.9e-43 178.3 225 42.7
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.0e-42 177.6 137 57.7
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.0e-42 177.6 230 46.1
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 6.5e-42 174.9 175 50.9
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 8.5e-42 174.5 129 59.7
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.1e-41 174.1 184 53.8
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 4.2e-41 172.2 153 54.9
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.2e-40 170.6 134 57.5
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.7e-40 168.7 199 48.7
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 7.9e-40 167.9 226 41.6
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 2.3e-39 166.4 121 65.3
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 3.9e-39 165.6 111 66.7
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 5.2e-39 165.2 180 50.0
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 2.0e-38 163.3 165 50.9
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.6e-38 162.9 179 46.4
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 2.6e-38 162.9 129 60.5
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 4.4e-38 162.2 165 49.7
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.3e-37 160.6 129 58.1
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.2e-37 159.8 229 41.5
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.2e-37 159.8 165 48.5
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 8.2e-37 157.9 165 47.3
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.1e-36 157.5 130 56.9
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.4e-36 157.1 163 49.1
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 4.1e-36 155.6 171 47.4
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 7.0e-36 154.8 201 44.8
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 9.1e-36 154.5 136 52.2
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 1.3e-34 150.6 178 46.6
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.9e-33 146.7 122 54.1
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.5e-33 146.4 119 58.0
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 4.2e-33 145.6 218 42.7
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.6e-32 143.7 138 52.9
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 6.7e-31 138.3 147 55.8
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 9.7e-30 134.4 203 40.9
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 3.5e-27 125.9 203 38.9
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.9e-26 122.9 258 36.8
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 5.0e-26 122.1 194 40.2
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.1e-24 116.7 76 71.1
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 6.1e-24 115.2 210 38.1
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 6.1e-24 115.2 210 38.1
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 2.3e-23 113.2 200 37.5
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.0e-23 112.5 87 63.2
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 1.5e-17 94.0 81 54.3
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 3.4e-14 82.8 54 66.7
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 6.3e-13 78.6 49 63.3


User provided reference genes

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