Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 5.9e-47 190.7 105 100.0
Nn2g15305 Nelumbo nucifera HOM05D004268 ORTHO05D004958 1.1e-21 106.7 103 59.2
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 4.2e-21 104.8 107 61.7
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 5.5e-21 104.4 108 62.0
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 7.2e-21 104.0 110 61.8
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 6.1e-20 100.9 111 55.9
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 8.0e-20 100.5 102 58.8
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.0e-19 100.1 113 59.3
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.0e-19 100.1 108 58.3
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.4e-19 99.8 108 59.3
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.8e-19 99.4 109 58.7
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 2.3e-19 99.0 107 56.1
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 5.2e-19 97.8 108 55.6
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 6.8e-19 97.4 109 58.7
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 6.8e-19 97.4 107 56.1
CDE05G3212 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 8.8e-19 97.1 103 54.4
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 8.8e-19 97.1 110 58.2
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 8.8e-19 97.1 106 58.5
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 1.2e-18 96.7 108 59.3
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 1.2e-18 96.7 107 57.9
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.5e-18 96.3 110 59.1
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 2.6e-18 95.5 108 51.9
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.6e-18 95.5 107 57.9
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.4e-18 95.1 111 55.9
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 3.4e-18 95.1 106 55.7
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.4e-18 94.7 109 52.3
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.4e-18 94.7 109 52.3
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 5.7e-18 94.4 104 59.6
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 5.7e-18 94.4 108 57.4
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 7.5e-18 94.0 104 55.8
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 1.3e-17 93.2 107 53.3
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 2.2e-17 92.4 105 54.3
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 2.2e-17 92.4 104 55.8
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 2.8e-17 92.0 107 48.6
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 2.8e-17 92.0 104 55.8
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 3.7e-17 91.7 107 53.3
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 3.7e-17 91.7 108 59.3
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 4.8e-17 91.3 108 52.8
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 4.8e-17 91.3 103 56.3
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 6.3e-17 90.9 109 54.1
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 6.3e-17 90.9 104 57.7
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 6.3e-17 90.9 112 52.7
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 6.3e-17 90.9 110 55.5
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.1e-16 90.1 109 54.1
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 1.1e-16 90.1 105 50.5
QL01p004584 Quercus lobata HOM05D004268 ORTHO05D004958 1.1e-16 90.1 108 50.0
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.1e-16 90.1 107 53.3
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 1.4e-16 89.7 110 50.0
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 1.4e-16 89.7 109 55.0
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 1.4e-16 89.7 109 55.0
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 1.4e-16 89.7 109 55.0
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.4e-16 89.7 107 47.7
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 1.4e-16 89.7 105 52.4
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 1.8e-16 89.4 110 51.8
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.8e-16 89.4 113 52.2
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 1.8e-16 89.4 113 54.0
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.4e-16 89.0 107 55.1
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.1e-16 88.6 108 50.0
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 3.1e-16 88.6 108 53.7
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 4.1e-16 88.2 108 55.6
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 5.4e-16 87.8 113 53.1
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 9.1e-16 87.0 107 55.1
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 1.2e-15 86.7 104 51.0
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 1.6e-15 86.3 105 46.7
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 1.6e-15 86.3 105 56.2
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.0e-15 85.9 105 56.2
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.0e-15 85.9 106 55.7
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 2.7e-15 85.5 105 55.2
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 2.7e-15 85.5 106 56.6
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 2.7e-15 85.5 105 55.2
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 2.7e-15 85.5 105 55.2
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 2.7e-15 85.5 110 51.8
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.7e-15 85.5 108 51.9
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 2.7e-15 85.5 108 51.9
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 2.7e-15 85.5 108 51.9
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 3.5e-15 85.1 106 55.7
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 3.5e-15 85.1 106 51.9
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 4.5e-15 84.7 108 52.8
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 4.5e-15 84.7 106 54.7
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 5.9e-15 84.3 105 56.2
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 5.9e-15 84.3 105 55.2
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 5.9e-15 84.3 107 50.5
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 7.7e-15 84.0 116 53.4
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 1.0e-14 83.6 108 48.1
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.3e-14 83.2 105 53.3
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 1.3e-14 83.2 105 53.3
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 2.2e-14 82.4 106 51.9
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 2.9e-14 82.0 105 53.3
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 2.9e-14 82.0 112 51.8
MELO3C014587.2 Cucumis melo HOM05D004268 ORTHO05D004958 2.9e-14 82.0 107 47.7
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 1.1e-13 80.1 111 55.0
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.1e-13 80.1 95 47.4
Dinv22170 Davidia involucrata HOM05D004268 ORTHO05D004958 1.5e-13 79.7 93 57.0
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 1.5e-13 79.7 108 50.0
Duzib168G1465 Durio zibethinus HOM05D004268 ORTHO05D004958 1.5e-13 79.7 108 45.4
Peaxi162Scf00032g00064 Petunia axillaris HOM05D004268 ORTHO05D004958 1.5e-13 79.7 110 50.9
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.5e-13 79.7 111 45.0
ClCG02G023150 Citrullus lanatus HOM05D004268 ORTHO05D004958 1.9e-13 79.3 108 48.1
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.9e-13 79.3 115 54.8
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 1.9e-13 79.3 111 51.4
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 4.2e-13 78.2 101 49.5
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 4.2e-13 78.2 112 51.8
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 4.2e-13 78.2 113 46.9
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 5.5e-13 77.8 107 48.6
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 9.5e-13 77.0 105 51.4
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 9.5e-13 77.0 106 47.2
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 1.2e-12 76.6 108 47.2
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 1.6e-12 76.3 106 51.9
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 1.6e-12 76.3 106 51.9
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.1e-12 75.9 107 50.5
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.7e-12 75.5 109 50.5
PGR119G0693 Punica granatum HOM05D004268 ORTHO05D004958 2.7e-12 75.5 110 46.4
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 4.7e-12 74.7 107 46.7
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 4.7e-12 74.7 107 46.7
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 1.4e-11 73.2 95 49.5
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 2.3e-11 72.4 107 45.8
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 3.0e-11 72.0 86 57.0
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 3.0e-11 72.0 110 50.9
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 4.0e-11 71.6 103 44.7
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 5.2e-11 71.2 108 43.5
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 5.2e-11 71.2 109 45.0
Dinv09347 Davidia involucrata HOM05D004268 ORTHO05D004958 1.2e-10 70.1 94 50.0
QL01p004491 Quercus lobata HOM05D004268 ORTHO05D004958 2.6e-10 68.9 108 41.7
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 4.4e-10 68.2 113 46.0
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 4.4e-10 68.2 113 42.5
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 4.4e-10 68.2 110 50.0
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 5.7e-10 67.8 109 44.0
TAR623G0940 Trochodendron aralioides HOM05D004268 ORTHO05D004958 5.7e-10 67.8 106 43.4
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 7.5e-10 67.4 38 81.6
Nn7g36237 Nelumbo nucifera HOM05D004268 ORTHO05D004958 9.8e-10 67.0 113 40.7
Nn7g36238 Nelumbo nucifera HOM05D004268 ORTHO05D004958 9.8e-10 67.0 113 40.7
Actinidia16340 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.3e-09 66.6 96 50.0
Dinv43432 Davidia involucrata HOM05D004268 ORTHO05D004958 1.7e-09 66.2 93 51.6
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 1.7e-09 66.2 109 45.0
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 2.2e-09 65.9 108 48.1
Solyc01g008510.3 Solanum lycopersicum HOM05D004268 ORTHO05D004958 2.8e-09 65.5 116 40.5
Sopen01g004050 Solanum pennellii HOM05D004268 ORTHO05D004958 3.7e-09 65.1 116 39.7
Lalb_Chr01g0000351 Lupinus albus HOM05D004268 ORTHO05D004958 4.9e-09 64.7 107 41.1
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 1.8e-08 62.8 38 76.3
PGSC0003DMG400010498 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.4e-08 62.4 89 47.2
PGSC0003DMG400019098 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.4e-08 62.4 116 42.2
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 3.1e-08 62.0 112 44.6
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 3.1e-08 62.0 108 41.7
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 9.2e-08 60.5 114 46.5
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 9.2e-08 60.5 106 46.2
Potri.001G265000 Populus trichocarpa HOM05D004268 ORTHO05D004958 9.2e-08 60.5 87 50.6
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 9.2e-08 60.5 119 38.7
Rhsim01G0129200 Rhododendron simsii HOM05D000074 ORTHO05D004958 2.7e-07 58.9 103 46.6
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 7.7e-07 57.4 111 43.2
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 1.3e-06 56.6 120 39.2
Zm00001eb245320 Zea mays HOM05D004268 ORTHO05D004958 2.3e-06 55.8 110 44.5
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 5.0e-06 54.7 38 60.5
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 6.6e-06 54.3 106 43.4
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.6e-06 54.3 39 69.2
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 8.6e-06 53.9 106 44.3


User provided reference genes

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