Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 0.0e+00 1903.3 922 100.0
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1145.2 947 60.1
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 0.0e+00 1119.0 927 59.8
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 8.2e-302 1040.4 953 54.6
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 5.3e-301 1037.7 867 59.1
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 4.6e-297 1024.6 961 53.6
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 1.0e-296 1023.5 923 54.8
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 1.2e-292 1010.0 992 51.6
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 7.2e-290 1000.7 959 53.2
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 9.4e-290 1000.3 912 54.5
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 1.2e-289 1000.0 935 52.9
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 6.1e-289 997.7 952 52.8
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 1.8e-288 996.1 943 54.1
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 2.3e-288 995.7 923 54.8
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 5.7e-287 991.1 947 52.4
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 2.8e-286 988.8 959 52.1
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 4.8e-286 988.0 932 53.0
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 8.2e-286 987.3 940 53.2
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 3.1e-285 985.3 927 54.2
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 9.1e-285 983.8 932 52.8
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 3.4e-284 981.9 932 52.6
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 5.9e-284 981.1 932 52.6
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 8.5e-283 977.2 943 52.2
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 1.2e-281 973.4 946 51.6
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 7.9e-281 970.7 946 51.2
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 1.0e-280 970.3 954 51.4
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 1.8e-280 969.5 934 51.5
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.0e-280 968.8 934 52.6
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 5.1e-280 968.0 943 51.4
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 8.8e-280 967.2 945 50.6
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 8.8e-280 967.2 934 52.5
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 8.2e-278 960.7 822 57.5
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 1.8e-277 959.5 926 51.9
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 6.5e-275 951.0 933 52.1
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 1.1e-274 950.3 963 51.1
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 1.1e-274 950.3 941 50.7
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 6.7e-272 941.0 915 50.8
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 1.5e-271 939.9 923 50.9
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 1.7e-270 936.4 951 49.9
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 8.2e-270 934.1 956 52.2
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 1.1e-269 933.7 934 50.6
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 9.1e-269 930.6 889 53.1
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 3.8e-267 925.2 913 50.7
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 5.0e-267 924.9 911 52.1
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 1.5e-266 923.3 830 55.3
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 1.5e-266 923.3 903 51.7
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 4.2e-266 921.8 943 49.8
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 8.0e-265 917.5 962 50.6
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 1.2e-263 913.7 859 53.7
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 4.4e-263 911.8 912 51.2
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 1.4e-261 906.7 918 50.5
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 5.3e-261 904.8 946 48.8
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 7.0e-261 904.4 903 49.9
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 7.0e-261 904.4 958 50.3
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.6e-260 903.3 861 52.3
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 2.0e-260 902.9 907 51.4
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 2.7e-260 902.5 962 49.3
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 2.9e-259 899.0 960 49.2
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 7.2e-258 894.4 948 50.1
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 1.0e-256 890.6 824 53.2
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 6.8e-256 887.9 947 49.6
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 2.0e-255 886.3 794 55.0
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 2.8e-254 882.5 904 49.6
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 3.7e-254 882.1 919 48.3
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 5.4e-253 878.2 874 51.4
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 1.0e-251 874.0 793 52.7
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 9.5e-250 867.5 901 47.5
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 1.2e-249 867.1 949 48.9
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 2.2e-246 856.3 917 48.9
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.1e-245 854.0 906 48.0
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 1.8e-245 853.2 962 48.1
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.2e-244 850.5 906 47.9
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 2.0e-244 849.7 962 48.0
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.9e-242 843.2 806 53.2
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.9e-242 843.2 806 53.2
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 1.6e-236 823.5 712 56.3
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 3.3e-234 815.8 945 46.5
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 9.5e-234 814.3 937 46.9
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 1.2e-233 813.9 802 50.7
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 1.8e-232 810.1 761 53.2
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 3.1e-232 809.3 905 45.7
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 3.2e-229 799.3 933 44.2
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 5.4e-221 771.9 722 54.2
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 6.4e-214 748.4 898 44.4
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.3e-211 740.7 748 50.8
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 1.8e-195 687.2 827 44.5
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 3.3e-194 682.9 630 53.8
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.4e-192 676.8 610 54.3
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 6.3e-177 625.5 630 49.7
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.2e-172 611.3 863 37.9
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 8.2e-169 598.6 896 41.5
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 4.1e-160 569.7 569 48.0
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 5.9e-159 565.8 492 55.9
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 6.1e-156 555.8 465 57.2
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 3.6e-140 503.4 573 48.5
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 2.3e-134 484.2 547 46.3
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.5e-125 454.1 471 50.3
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 2.9e-121 440.7 454 50.0
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 4.1e-112 410.2 852 31.3
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 4.9e-105 386.7 389 50.9
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 1.7e-97 361.7 384 46.4
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 5.6e-85 320.1 302 52.3
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 3.4e-66 257.7 301 49.8
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 3.0e-62 244.6 215 55.8
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 3.1e-59 234.6 289 45.0
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 2.2e-57 228.4 260 49.2
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 2.2e-57 228.4 269 44.2
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 1.3e-49 202.6 279 44.4
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 2.3e-38 165.2 265 40.4
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 3.7e-28 131.3 160 47.5
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 2.4e-27 128.6 910 21.8
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 5.4e-27 127.5 160 48.1
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 5.4e-27 127.5 86 64.0
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 8.5e-25 120.2 136 47.8
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 9.5e-24 116.7 105 60.0
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 4.4e-21 107.8 194 35.6
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 4.6e-10 71.2 92 41.3
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 3.0e-09 68.6 59 50.8
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 3.3e-08 65.1 96 40.6
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 7.3e-08 63.9 61 45.9
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 8.0e-07 60.5 88 43.2
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.0e-06 60.1 47 53.2


User provided reference genes

Program Settings