Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 9.8e-74 280.0 140 100.0
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 2.1e-47 192.6 129 70.5
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 3.0e-46 188.7 129 71.3
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 4.3e-37 158.3 117 63.2
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 4.3e-37 158.3 132 55.3
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 3.1e-35 152.1 116 63.8
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 7.4e-29 131.0 136 48.5
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 3.6e-28 128.6 137 49.6
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 3.6e-28 128.6 138 48.6
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 6.2e-28 127.9 132 51.5
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 5.3e-27 124.8 132 48.5
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.4e-26 122.1 126 51.6
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 9.9e-26 120.6 116 53.4
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 2.3e-22 109.4 141 44.7
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 3.9e-22 108.6 145 41.4
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 1.6e-20 103.2 95 56.8
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 8.1e-20 100.9 116 46.6
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.1e-19 100.5 145 42.1
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 2.4e-19 99.4 112 45.5
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 5.3e-19 98.2 116 45.7
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 9.0e-19 97.4 118 43.2
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 9.0e-19 97.4 122 43.4
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 1.5e-18 96.7 120 42.5
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 1.5e-18 96.7 111 48.6
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 2.0e-18 96.3 117 43.6
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 2.6e-18 95.9 102 51.0
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 3.4e-18 95.5 115 47.8
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 3.4e-18 95.5 137 40.9
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 4.5e-18 95.1 117 42.7
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 5.8e-18 94.7 137 39.4
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 7.6e-18 94.4 101 50.5
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 1.3e-17 93.6 110 46.4
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 1.7e-17 93.2 125 44.8
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 3.8e-17 92.0 150 38.7
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 4.9e-17 91.7 105 47.6
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 4.9e-17 91.7 117 41.0
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 4.9e-17 91.7 116 41.4
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 6.5e-17 91.3 115 49.6
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 6.5e-17 91.3 110 42.7
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 1.1e-16 90.5 105 49.5
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.9e-16 89.7 105 47.6
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.9e-16 89.7 112 45.5
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 2.5e-16 89.4 131 41.2
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 2.5e-16 89.4 111 45.0
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 3.2e-16 89.0 105 47.6
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 5.5e-16 88.2 93 51.6
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 7.1e-16 87.8 122 42.6
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 9.3e-16 87.4 117 41.9
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 9.3e-16 87.4 137 42.3
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.2e-15 87.0 69 59.4
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 1.2e-15 87.0 142 39.4
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 1.6e-15 86.7 142 38.0
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 1.6e-15 86.7 134 40.3
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 2.1e-15 86.3 136 41.9
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 3.5e-15 85.5 143 40.6
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 4.6e-15 85.1 134 44.0
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 4.6e-15 85.1 134 40.3
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 6.0e-15 84.7 120 41.7
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 7.9e-15 84.3 123 36.6
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 1.0e-14 84.0 135 43.0
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 1.3e-14 83.6 134 40.3
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.3e-14 83.6 135 40.7
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 2.3e-14 82.8 86 51.2
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 2.3e-14 82.8 96 45.8
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 3.0e-14 82.4 137 40.1
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 3.9e-14 82.0 117 38.5
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 3.9e-14 82.0 114 44.7
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 1.5e-13 80.1 114 43.9
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 2.5e-13 79.3 135 39.3
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 3.3e-13 79.0 109 38.5
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 5.7e-13 78.2 103 44.7
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 7.4e-13 77.8 117 35.9
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 7.4e-13 77.8 142 34.5
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 9.6e-13 77.4 84 46.4
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 1.3e-12 77.0 88 44.3
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 4.8e-12 75.1 116 36.2
FAN16G2896 Fragaria x ananassa HOM05D007217 ORTHO05D009092 4.8e-12 75.1 129 40.3
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 4.8e-12 75.1 125 37.6
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 4.8e-12 75.1 114 36.8
FAN21G1503 Fragaria x ananassa HOM05D007217 ORTHO05D009092 6.3e-12 74.7 129 40.3
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 8.2e-12 74.3 117 35.0
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 8.2e-12 74.3 87 46.0
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.1e-11 73.9 113 38.1
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 1.1e-11 73.9 87 47.1
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 1.1e-11 73.9 87 47.1
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.4e-11 73.6 125 37.6
AUR62017567 Chenopodium quinoa HOM05D007217 ORTHO05D009092 1.8e-11 73.2 75 48.0
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 5.3e-11 71.6 117 35.0
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 9.0e-11 70.9 120 34.2
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.2e-10 70.5 69 50.7
COL.COLO4_30930 Corchorus olitorius HOM05D007217 ORTHO05D009092 1.5e-10 70.1 62 56.5
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 1.0e-09 67.4 114 38.6
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 1.7e-09 66.6 140 32.1
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 1.7e-09 66.6 113 38.9
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 3.8e-09 65.5 113 38.9
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 3.8e-09 65.5 126 34.1
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 5.0e-09 65.1 108 39.8
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 8.5e-09 64.3 65 43.1
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 8.5e-09 64.3 65 43.1
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 2.5e-08 62.8 120 36.7
Hund24191 Selenicereus undatus HOM05D007217 ORTHO05D009092 7.2e-08 61.2 58 48.3
Thhalv10019705m.g Eutrema salsugineum HOM05D007217 ORTHO05D009092 9.3e-08 60.8 96 37.5


User provided reference genes

Program Settings