Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 1.0e-232 809.7 402 100.0
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 9.3e-218 760.0 402 91.8
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 92.0
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 3.5e-217 758.1 402 92.0
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.8
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 5.1e-216 754.2 402 90.5
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 6.6e-216 753.8 402 91.0
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 90.5
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 2.5e-215 751.9 402 90.5
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 5.6e-215 750.7 402 90.5
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 9.6e-215 750.0 402 90.3
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.6e-214 749.2 402 90.5
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.8
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 2.8e-214 748.4 402 89.8
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 3.6e-214 748.0 402 90.8
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 4.8e-214 747.7 402 90.0
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 6.2e-214 747.3 402 89.3
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 8.1e-214 746.9 402 90.0
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 2.4e-213 745.3 402 89.3
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 89.3
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 3.1e-213 745.0 402 90.0
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 89.6
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 89.6
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 89.3
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.0e-213 744.6 402 89.1
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 5.3e-213 744.2 402 88.8
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 88.8
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 6.9e-213 743.8 402 90.0
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.6
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 9.0e-213 743.4 402 89.3
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 1.2e-212 743.0 402 89.6
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 2.0e-212 742.3 401 89.5
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 3.4e-212 741.5 438 84.7
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 88.3
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 88.8
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 3.4e-212 741.5 402 88.3
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 4.5e-212 741.1 402 89.1
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.6
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.6
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 5.8e-212 740.7 402 88.6
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 88.6
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 7.6e-212 740.3 402 89.1
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 89.1
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 9.9e-212 740.0 402 88.8
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 88.6
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 1.7e-211 739.2 402 88.8
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 88.1
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 2.9e-211 738.4 402 87.8
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 3.8e-211 738.0 402 88.6
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 88.1
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 87.8
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 88.1
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 4.9e-211 737.6 402 88.8
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 8.4e-211 736.9 402 88.6
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 88.1
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.1e-210 736.5 402 87.6
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.4e-210 736.1 402 87.6
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 88.3
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 87.6
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.9e-210 735.7 402 88.3
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 88.6
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 87.8
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 87.3
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 2.4e-210 735.3 402 87.6
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.2e-210 734.9 402 88.1
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 4.2e-210 734.6 402 87.6
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.6
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 9.3e-210 733.4 402 87.6
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.3
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.2e-209 733.0 402 87.6
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 1.6e-209 732.6 402 87.3
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 2.1e-209 732.3 402 87.6
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 7.9e-209 730.3 416 85.6
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.3e-208 729.6 402 86.8
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.1
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.1
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.1
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 87.3
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 3.0e-208 728.4 402 86.3
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 86.8
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 3.9e-208 728.0 402 86.8
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 3.9e-208 728.0 416 85.3
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 8.7e-208 726.9 402 87.3
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 8.7e-208 726.9 402 86.8
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.1e-207 726.5 411 85.6
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 86.8
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.5e-207 726.1 402 86.3
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 1.5e-207 726.1 402 86.3
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 3.3e-207 724.9 402 86.6
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 4.3e-207 724.5 402 86.6
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 86.3
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 86.3
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 5.6e-207 724.2 402 86.3
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 7.4e-207 723.8 402 86.6
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 9.6e-207 723.4 402 86.3
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 1.3e-206 723.0 402 86.1
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 1.3e-206 723.0 402 86.1
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.3e-206 723.0 402 86.1
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 6.2e-206 720.7 417 83.9
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 8.1e-206 720.3 402 86.3
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 2.4e-205 718.8 402 85.6
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 85.6
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 3.1e-205 718.4 402 85.3
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 5.3e-205 717.6 429 81.8
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 2.6e-204 715.3 402 84.8
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 2.6e-204 715.3 401 86.5
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 7.6e-204 713.8 398 84.9
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.0e-203 713.4 402 84.3
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 6.5e-203 710.7 402 84.8
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 2.7e-201 705.3 402 85.8
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.7e-201 705.3 402 85.6
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 1.9e-199 699.1 419 83.1
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 4.3e-199 698.0 402 82.3
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 7.4e-199 697.2 402 84.8
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 7.4e-199 697.2 441 78.5
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 3.7e-198 694.9 400 82.5
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 6.9e-197 690.6 402 83.6
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 1.4e-194 682.9 402 83.3
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.4e-194 682.9 375 87.5
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 5.1e-192 674.5 402 81.6
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 7.4e-191 670.6 402 80.3
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.6e-190 669.5 402 81.6
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 2.2e-190 669.1 361 90.9
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 1.1e-189 666.8 402 79.1
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 1.4e-189 666.4 360 88.1
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 2.0e-188 662.5 402 79.6
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.7e-187 659.4 357 88.8
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 1.7e-179 632.9 402 77.4
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 1.6e-177 626.3 402 73.1
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 2.3e-176 622.5 340 89.4
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 3.9e-176 621.7 401 73.1
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 3.9e-176 621.7 402 73.1
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 3.7e-174 615.1 402 77.6
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 7.0e-173 610.9 334 88.0
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 7.7e-172 607.4 402 71.4
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 7.2e-170 600.9 403 70.5
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.7e-169 598.2 403 69.7
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 2.0e-164 582.8 402 69.9
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 5.5e-162 574.7 401 67.6
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 2.2e-158 562.8 403 66.5
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 1.0e-147 527.3 289 87.2
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 5.2e-144 515.0 403 68.0
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 5.6e-138 495.0 419 62.8
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 2.3e-136 489.6 402 64.4
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 6.4e-126 454.9 259 84.9
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 3.6e-121 439.1 394 54.3
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 7.8e-116 421.4 395 54.2
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 1.6e-113 413.7 276 75.4
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 4.0e-104 382.5 229 81.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 5.6e-98 362.1 219 79.9
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 2.1e-97 360.1 219 79.0
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 4.8e-97 359.0 219 78.1
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 6.3e-81 305.4 300 52.3
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.3e-78 297.7 160 89.4
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 4.3e-74 282.7 163 82.2
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 2.9e-54 216.9 116 89.7
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 2.2e-33 147.5 351 30.2
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 3.1e-32 143.7 352 28.7
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 3.1e-32 143.7 86 80.2
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 8.3e-17 92.4 47 89.4
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 4.7e-12 76.6 45 71.1
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 8.1e-12 75.9 72 56.9
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 4.0e-11 73.6 321 24.6


User provided reference genes

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