Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 4.3e-83 311.2 152 100.0
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 3.4e-72 275.0 142 95.1
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 8.2e-66 253.8 142 86.6
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 1.4e-65 253.1 142 86.6
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 2.6e-64 248.8 140 85.0
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 4.5e-64 248.1 142 85.2
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 1.3e-63 246.5 140 83.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 1.3e-63 246.5 140 84.3
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 5.0e-63 244.6 142 83.8
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.1e-62 243.4 140 82.9
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 4.2e-62 241.5 142 83.1
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 4.2e-62 241.5 142 82.4
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 5.5e-62 241.1 142 81.0
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 7.2e-62 240.7 142 81.0
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 9.3e-62 240.4 142 82.4
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.2e-61 240.0 148 77.0
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 1.6e-61 239.6 142 81.7
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 4.6e-61 238.0 142 83.1
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 4.6e-61 238.0 142 83.1
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 6.1e-61 237.7 141 80.9
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 7.9e-61 237.3 142 81.0
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 1.3e-60 236.5 142 81.0
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 1.3e-60 236.5 142 80.3
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 1.8e-60 236.1 142 78.9
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 1.8e-60 236.1 142 78.2
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 1.8e-60 236.1 140 79.3
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 3.9e-60 235.0 142 79.6
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 3.9e-60 235.0 142 80.3
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 3.9e-60 235.0 142 79.6
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 3.9e-60 235.0 140 78.6
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 5.1e-60 234.6 148 77.0
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 8.7e-60 233.8 142 80.3
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.1e-59 233.4 142 79.6
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 1.1e-59 233.4 140 77.9
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 1.1e-59 233.4 141 78.7
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 2.5e-59 232.3 140 79.3
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 2.5e-59 232.3 140 77.1
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 3.3e-59 231.9 140 78.6
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 3.3e-59 231.9 144 77.1
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 3.3e-59 231.9 142 78.2
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 3.3e-59 231.9 142 78.2
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 4.3e-59 231.5 142 78.2
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 5.7e-59 231.1 142 79.6
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 5.7e-59 231.1 142 79.6
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 5.7e-59 231.1 142 78.9
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 5.7e-59 231.1 142 77.5
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.3e-58 229.9 142 79.6
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 1.3e-58 229.9 140 77.1
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.3e-58 229.9 142 78.9
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 1.3e-58 229.9 142 78.2
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 1.6e-58 229.6 142 77.5
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 1.6e-58 229.6 142 78.9
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.6e-58 229.6 140 78.6
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 2.8e-58 228.8 142 77.5
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 6.3e-58 227.6 142 80.3
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.3e-58 227.6 142 78.2
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 6.3e-58 227.6 142 78.2
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 8.2e-58 227.3 142 76.8
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 1.1e-57 226.9 142 76.8
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.1e-57 226.9 142 75.4
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.4e-57 226.5 142 76.8
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.4e-57 226.5 142 78.2
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 1.8e-57 226.1 142 78.2
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 2.4e-57 225.7 142 78.9
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 3.1e-57 225.3 142 77.5
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 3.1e-57 225.3 142 76.8
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 3.1e-57 225.3 142 76.1
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.1e-57 225.3 142 75.4
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 4.1e-57 224.9 142 76.1
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 4.1e-57 224.9 142 75.4
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 5.3e-57 224.6 142 76.1
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 5.3e-57 224.6 140 75.7
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 6.9e-57 224.2 140 75.7
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 6.9e-57 224.2 142 77.5
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 9.0e-57 223.8 142 76.1
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 9.0e-57 223.8 148 72.3
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.2e-56 223.4 130 83.1
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.2e-56 223.4 142 76.1
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 1.5e-56 223.0 142 74.6
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.5e-56 223.0 133 78.9
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.5e-56 223.0 140 75.0
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.0e-56 222.6 147 73.5
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 2.0e-56 222.6 140 76.4
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 2.6e-56 222.2 142 76.1
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.6e-56 222.2 140 77.9
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 3.4e-56 221.9 142 73.2
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 5.9e-56 221.1 142 75.4
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 7.7e-56 220.7 141 75.9
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 7.7e-56 220.7 142 73.9
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 1.0e-55 220.3 142 73.9
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 1.0e-55 220.3 142 73.9
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 1.0e-55 220.3 142 73.9
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.0e-55 220.3 142 71.8
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.3e-55 219.9 142 76.1
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 1.3e-55 219.9 142 76.1
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 2.2e-55 219.2 140 75.7
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 2.9e-55 218.8 142 72.5
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 2.9e-55 218.8 142 72.5
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.8e-55 218.4 129 82.2
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 6.5e-55 217.6 142 73.9
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 8.5e-55 217.2 141 73.0
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 8.5e-55 217.2 142 74.6
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 1.1e-54 216.9 142 75.4
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.9e-54 216.1 137 77.4
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 2.5e-54 215.7 172 65.1
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 1.2e-53 213.4 139 71.9
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 3.6e-53 211.8 156 67.9
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 1.0e-52 210.3 140 73.6
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 3.9e-52 208.4 140 70.7
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 8.8e-52 207.2 128 76.6
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 4.1e-49 198.4 133 74.4
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.4e-48 195.3 142 69.7
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 1.3e-47 193.4 192 54.7
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 1.3e-47 193.4 145 69.7
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 1.3e-47 193.4 142 67.6
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 2.9e-47 192.2 142 68.3
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 2.5e-46 189.1 126 74.6
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 9.4e-46 187.2 140 64.3
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 9.4e-46 187.2 112 79.5
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 3.3e-43 178.7 142 61.3
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 1.4e-41 173.3 140 61.4
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.6e-40 169.9 127 65.4
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 5.9e-40 167.9 136 57.4
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 6.5e-39 164.5 141 53.9
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 2.5e-38 162.5 109 72.5
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 3.2e-38 162.2 102 76.5
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 5.5e-38 161.4 106 73.6
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 4.7e-37 158.3 141 52.5
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 4.7e-37 158.3 141 52.5
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.4e-36 156.8 97 79.4
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 1.4e-36 156.8 100 79.0
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 3.0e-36 155.6 127 66.1
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 8.8e-36 154.1 149 54.4
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.7e-34 149.8 102 71.6
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 2.8e-34 149.1 109 64.2
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.8e-34 149.1 97 77.3
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 2.7e-32 142.5 101 76.2
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.5e-32 141.7 92 73.9
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.2e-30 135.6 152 46.1
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.2e-29 133.7 152 45.4
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 4.7e-29 131.7 147 44.9
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 2.6e-27 125.9 92 71.7
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 3.6e-21 105.5 133 45.9
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.5e-19 100.1 67 71.6


User provided reference genes

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