Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold39G15320 Striga asiatica HOM05D004989 ORTHO05D006335 2.4e-119 432.2 216 100.0
SalBow2G0224 Salvia bowleyana HOM05D004989 ORTHO05D006335 3.3e-97 358.6 196 89.3
Migut.G00301 Erythranthe guttata HOM05D004989 ORTHO05D006335 9.7e-97 357.1 196 89.3
MSTRG.10011 Avicennia marina HOM05D004989 ORTHO05D006335 3.7e-96 355.1 196 88.3
Nitab4.5_0000630g0050 Nicotiana tabacum HOM05D004989 ORTHO05D006335 6.3e-96 354.4 203 85.7
MSTRG.4001 Avicennia marina HOM05D004989 ORTHO05D006335 5.3e-95 351.3 196 87.2
Peaxi162Scf00134g02033 Petunia axillaris HOM05D004989 ORTHO05D006335 7.0e-95 350.9 196 86.7
CAN.G69.27 Capsicum annuum HOM05D004989 ORTHO05D006335 1.2e-94 350.1 196 86.2
Dinv38405 Davidia involucrata HOM05D004989 ORTHO05D006335 1.2e-94 350.1 196 87.2
PGSC0003DMG400009024 Solanum tuberosum HOM05D004989 ORTHO05D006335 1.6e-94 349.7 196 86.2
Solyc01g079860.3 Solanum lycopersicum HOM05D004989 ORTHO05D006335 4.5e-94 348.2 196 85.7
Lj6A574T37 Lonicera japonica HOM05D004989 ORTHO05D006335 3.8e-93 345.1 195 87.2
Sopen01g031620 Solanum pennellii HOM05D004989 ORTHO05D006335 3.8e-93 345.1 196 84.7
Nitab4.5_0005927g0020 Nicotiana tabacum HOM05D004989 ORTHO05D006335 8.5e-93 344.0 196 85.7
CiPaw.02G093300 Carya illinoinensis HOM05D004989 ORTHO05D006335 4.2e-92 341.7 196 84.7
unitig_736.g22488 Utricularia gibba HOM05D004989 ORTHO05D006335 9.4e-92 340.5 205 81.0
Cc03_g03230 Coffea canephora HOM05D004989 ORTHO05D006335 2.7e-91 339.0 195 82.6
GSVIVG01017902001 Vitis vinifera HOM05D004989 ORTHO05D006335 2.7e-91 339.0 196 84.7
CSS0017868 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 3.6e-91 338.6 197 85.8
Dinv44490 Davidia involucrata HOM05D004989 ORTHO05D006335 3.6e-91 338.6 196 83.7
CSS0000312 Camellia sinensis var. sinensis HOM05D004989 ORTHO05D006335 4.7e-91 338.2 195 84.6
ECA234G2869 Erigeron canadensis HOM05D004989 ORTHO05D006335 6.1e-91 337.8 195 83.6
HanXRQChr12g0359311 Helianthus annuus HOM05D004989 ORTHO05D006335 1.0e-90 337.0 195 84.6
MD16G1186000 Malus domestica HOM05D004989 ORTHO05D006335 1.8e-90 336.3 196 82.7
vmacro15315 Vaccinium macrocarpon HOM05D004989 ORTHO05D006335 3.0e-90 335.5 196 82.7
Oeu042787.2 Olea europaea HOM05D004989 ORTHO05D006335 4.0e-90 335.1 197 83.8
TAR365G0616 Trochodendron aralioides HOM05D004989 ORTHO05D006335 4.0e-90 335.1 196 82.1
FvH4_4g14760 Fragaria vesca HOM05D004989 ORTHO05D006335 1.2e-89 333.6 196 83.7
Lalb_Chr18g0056141 Lupinus albus HOM05D004989 ORTHO05D006335 1.2e-89 333.6 205 79.5
Lj6g0002948 Lotus japonicus HOM05D004989 ORTHO05D006335 1.5e-89 333.2 196 81.1
Prupe.1G152800 Prunus persica HOM05D004989 ORTHO05D006335 1.5e-89 333.2 196 82.7
CANSAT78G0752 Cannabis sativa HOM05D004989 ORTHO05D006335 2.6e-89 332.4 198 81.8
Sc13g0004100 Simmondsia chinensis HOM05D004989 ORTHO05D006335 4.4e-89 331.6 198 81.3
Ca_00634_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 9.8e-89 330.5 195 81.0
Haze_00947 Corylus avellana HOM05D004989 ORTHO05D006335 9.8e-89 330.5 195 82.1
VMungo1215G0587 Vigna mungo HOM05D004989 ORTHO05D006335 9.8e-89 330.5 195 81.0
Phvul.003G091700 Phaseolus vulgaris HOM05D004989 ORTHO05D006335 2.2e-88 329.3 205 76.6
Psat1g182800 Pisum sativum HOM05D004989 ORTHO05D006335 2.8e-88 328.9 195 82.6
Cfa015597 Carpinus fangiana HOM05D004989 ORTHO05D006335 4.8e-88 328.2 196 82.1
Rhsim02G0020900 Rhododendron simsii HOM05D004989 ORTHO05D006335 4.8e-88 328.2 196 80.1
RcHm_v2.0_Chr0c32g0501471 Rosa chinensis HOM05D004989 ORTHO05D006335 4.8e-88 328.2 200 81.0
FAN17G0130 Fragaria x ananassa HOM05D004989 ORTHO05D006335 6.3e-88 327.8 196 82.1
RcHm_v2.0_Chr4g0417841 Rosa chinensis HOM05D004989 ORTHO05D006335 6.3e-88 327.8 194 83.0
RcHm_v2.0_Chr0c32g0501661 Rosa chinensis HOM05D004989 ORTHO05D006335 8.3e-88 327.4 195 82.6
RcHm_v2.0_Chr3g0483801 Rosa chinensis HOM05D004989 ORTHO05D006335 8.3e-88 327.4 195 82.6
arahy.Tifrunner.gnm1.ann1.L7AGGG Arachis hypogaea HOM05D004989 ORTHO05D006335 1.4e-87 326.6 204 78.9
Glyma.07G257800 Glycine max HOM05D004989 ORTHO05D006335 2.4e-87 325.9 195 81.5
Potri.008G203600 Populus trichocarpa HOM05D004989 ORTHO05D006335 2.4e-87 325.9 195 81.5
QL06p003872 Quercus lobata HOM05D004989 ORTHO05D006335 2.4e-87 325.9 196 81.1
Aqoxy3G00936 Aquilegia oxysepala HOM05D004989 ORTHO05D006335 4.1e-87 325.1 196 79.1
Nn1g02182 Nelumbo nucifera HOM05D004989 ORTHO05D006335 7.0e-87 324.3 196 77.6
arahy.Tifrunner.gnm1.ann1.8A1ZYN Arachis hypogaea HOM05D004989 ORTHO05D006335 1.2e-86 323.6 204 78.4
MELO3C006557.2 Cucumis melo HOM05D004989 ORTHO05D006335 1.6e-86 323.2 196 78.6
Glyma.17G016200 Glycine max HOM05D004989 ORTHO05D006335 1.6e-86 323.2 195 80.5
Medtr2g022530 Medicago truncatula HOM05D004989 ORTHO05D006335 1.6e-86 323.2 195 79.5
Atru.chr4.2544 Acer truncatum HOM05D004989 ORTHO05D006335 2.0e-86 322.8 199 79.9
Ciclev10005119m.g Citrus clementina HOM05D004989 ORTHO05D006335 2.0e-86 322.8 198 80.3
MBI14_g28267_MAGBIO Magnolia biondii HOM05D004989 ORTHO05D006335 3.5e-86 322.0 198 79.3
Sed0017941 Sechium edule HOM05D004989 ORTHO05D006335 3.5e-86 322.0 196 78.1
AUR62026218 Chenopodium quinoa HOM05D004989 ORTHO05D006335 4.5e-86 321.6 195 79.0
CsaV3_3G013610 Cucumis sativus L. HOM05D004989 ORTHO05D006335 4.5e-86 321.6 196 78.1
PSO017G3853 Papaver somniferum HOM05D004989 ORTHO05D006335 7.7e-86 320.9 196 77.6
Aa31LG11G10490 Aethionema arabicum HOM05D004989 ORTHO05D006335 2.2e-85 319.3 199 79.4
EL10Ac3g05973 Beta vulgaris HOM05D004989 ORTHO05D006335 2.2e-85 319.3 195 77.4
Thecc.04G224100 Theobroma cacao HOM05D004989 ORTHO05D006335 1.1e-84 317.0 198 79.8
PSO478G2898 Papaver somniferum HOM05D004989 ORTHO05D006335 2.5e-84 315.8 196 76.5
CDE07G1289 Ceratophyllum demersum HOM05D004989 ORTHO05D006335 5.5e-84 314.7 194 78.9
Manes.03G183100 Manihot esculenta HOM05D004989 ORTHO05D006335 1.6e-83 313.2 195 78.5
Hund12013 Selenicereus undatus HOM05D004989 ORTHO05D006335 6.1e-83 311.2 196 74.0
COL.COLO4_26626 Corchorus olitorius HOM05D004989 ORTHO05D006335 1.0e-82 310.5 198 77.3
AT5G19150 Arabidopsis thaliana HOM05D004989 ORTHO05D006335 1.4e-82 310.1 199 78.4
Eucgr.B01122 Eucalyptus grandis HOM05D004989 ORTHO05D006335 1.4e-82 310.1 195 74.4
Thhalv10013830m.g Eutrema salsugineum HOM05D004989 ORTHO05D006335 1.8e-82 309.7 199 77.4
CARHR193800 Cardamine hirsuta HOM05D004989 ORTHO05D006335 4.0e-82 308.5 199 76.9
A03p09380 Brassica napus HOM05D004989 ORTHO05D006335 5.2e-82 308.1 198 76.8
Carub.0006s1748 Capsella rubella HOM05D004989 ORTHO05D006335 5.2e-82 308.1 199 76.4
AL6G30570 Arabidopsis lyrata HOM05D004989 ORTHO05D006335 6.8e-82 307.8 199 76.9
HPP92_005520 Vanilla planifolia HOM05D004989 ORTHO05D006335 6.8e-82 307.8 196 74.5
BraA02t05485Z Brassica rapa HOM05D004989 ORTHO05D006335 1.5e-81 306.6 198 76.8
Gohir.D02G037100 Gossypium hirsutum HOM05D004989 ORTHO05D006335 1.5e-81 306.6 198 77.8
Gorai.005G041000 Gossypium raimondii HOM05D004989 ORTHO05D006335 1.5e-81 306.6 198 77.8
ATR0743G104 Amborella trichopoda HOM05D004989 ORTHO05D006335 2.6e-81 305.8 196 74.0
BolC3t13560H Brassica oleracea HOM05D004989 ORTHO05D006335 2.6e-81 305.8 206 73.3
Gohir.A02G029300 Gossypium hirsutum HOM05D004989 ORTHO05D006335 2.6e-81 305.8 198 78.3
Sp6g25210 Schrenkiella parvula HOM05D004989 ORTHO05D006335 2.6e-81 305.8 198 76.8
THA.LOC104818802 Tarenaya hassleriana HOM05D004989 ORTHO05D006335 2.6e-81 305.8 199 75.4
FAN22G1009 Fragaria x ananassa HOM05D004989 ORTHO05D006335 4.4e-81 305.1 196 77.6
Os11g0276300 Oryza sativa ssp. japonica HOM05D004989 ORTHO05D006335 4.4e-81 305.1 198 71.7
BcaB01g04874 Brassica carinata HOM05D004989 ORTHO05D006335 7.5e-81 304.3 198 75.3
A02p05270 Brassica napus HOM05D004989 ORTHO05D006335 1.3e-80 303.5 198 74.7
Zm00001eb168810 Zea mays HOM05D004989 ORTHO05D006335 8.3e-80 300.8 198 71.2
BcaB05g23373 Brassica carinata HOM05D004989 ORTHO05D006335 1.4e-79 300.1 198 75.3
BcaC03g13646 Brassica carinata HOM05D004989 ORTHO05D006335 3.1e-79 298.9 198 74.2
C02p10390 Brassica napus HOM05D004989 ORTHO05D006335 3.1e-79 298.9 198 74.2
BolC2t06940H Brassica oleracea HOM05D004989 ORTHO05D006335 3.1e-79 298.9 198 74.2
Sabra08G0157900 Salix brachista HOM05D004989 ORTHO05D006335 3.1e-79 298.9 231 66.7
BcaB01g05136 Brassica carinata HOM05D004989 ORTHO05D006335 7.0e-79 297.7 198 73.7
BraA03t10257Z Brassica rapa HOM05D004989 ORTHO05D006335 1.2e-78 297.0 211 70.6
C03p10950 Brassica napus HOM05D004989 ORTHO05D006335 1.6e-78 296.6 207 71.5
Ah.07g202120 Amaranthus hybridus HOM05D004989 ORTHO05D006335 2.7e-78 295.8 190 72.1
C03p10960 Brassica napus HOM05D004989 ORTHO05D006335 2.7e-78 295.8 207 71.0
Hma1.2p1_2553F.1_g324330 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 4.5e-78 295.0 171 85.4
ClCG05G005360 Citrullus lanatus HOM05D004989 ORTHO05D006335 5.9e-78 294.7 175 79.4
TPR.G28611 Trifolium pratense HOM05D004989 ORTHO05D006739 1.2e-75 287.0 175 79.4
Lj6g0017812 Lotus japonicus HOM05D004989 ORTHO05D006335 1.3e-72 276.9 196 70.4
SHI00391 Sapria himalayana HOM05D004989 ORTHO05D006335 1.1e-71 273.9 209 64.6
TWI73G0966 Tripterygium wilfordii HOM05D004989 ORTHO05D006335 5.4e-71 271.6 198 69.7
BcaB01g05294 Brassica carinata HOM05D004989 ORTHO05D006335 9.5e-68 260.8 197 67.5
Actinidia36991 Actinidia chinensis HOM05D004989 ORTHO05D006335 2.1e-67 259.6 196 68.9
CBR_g26053 Chara braunii HOM05D004989 ORTHO05D006335 2.3e-66 256.1 209 60.8
Mapoly0063s0079 Marchantia polymorpha HOM05D004989 ORTHO05D006335 1.2e-65 253.8 197 62.9
C03p10910 Brassica napus HOM05D004989 ORTHO05D006335 1.5e-65 253.4 173 72.3
SMO361G0104 Selaginella moellendorffii HOM05D004989 ORTHO05D006335 2.0e-65 253.1 199 63.8
C03p10860 Brassica napus HOM05D004989 ORTHO05D006335 8.3e-64 247.7 198 64.6
FAN07G2774 Fragaria x ananassa HOM05D004989 ORTHO05D006335 8.3e-64 247.7 197 65.0
Hma1.2p1_2553F.1_g324320 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 4.1e-63 245.4 171 75.4
TPR.G30683 Trifolium pratense HOM05D004989 ORTHO05D006335 4.6e-62 241.9 164 74.4
HPP92_005588 Vanilla planifolia HOM05D004989 ORTHO05D006335 1.4e-55 220.3 206 57.3
Ca_00654_v3 Cicer arietinum L. HOM05D004989 ORTHO05D006335 7.1e-55 218.0 176 65.3
Pp3c8_1650 Physcomitrium patens HOM05D004989 ORTHO05D006335 1.3e-53 213.8 184 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1251 Anthoceros agrestis HOM05D004989 ORTHO05D006335 2.8e-51 206.1 208 52.9
Hma1.2p1_0995F.1_g245810 Hydrangea macrophylla HOM05D004989 ORTHO05D006335 1.2e-46 190.7 100 93.0
Hund03167 Selenicereus undatus HOM05D004989 ORTHO05D006335 3.5e-46 189.1 117 74.4
Cre06.g250500 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 1.1e-42 177.6 220 42.3
Cpa.g.sc147.7 Carica papaya HOM05D004989 ORTHO05D006335 5.2e-42 175.3 137 67.2
Cfa024379 Carpinus fangiana HOM05D004989 ORTHO05D006335 3.4e-41 172.6 195 43.6
SEGI_27897 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 2.9e-40 169.5 100 76.0
SEGI_07547 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 4.9e-40 168.7 100 75.0
arahy.Tifrunner.gnm1.ann1.BS3LH0 Arachis hypogaea HOM05D004989 ORTHO05D006335 8.4e-40 167.9 112 74.1
Duzib151G0886 Durio zibethinus HOM05D004989 ORTHO05D006335 5.4e-39 165.2 195 49.7
PRCOL_00001617 Prasinoderma coloniale HOM05D004989 ORTHO05D006335 2.3e-37 159.8 212 43.4
PGR142G2933 Punica granatum HOM05D004989 ORTHO05D006335 3.9e-37 159.1 196 48.0
arahy.Tifrunner.gnm1.ann1.J5ZRE9 Arachis hypogaea HOM05D004989 ORTHO05D006335 1.3e-35 154.1 97 76.3
Atru.chr4.2545 Acer truncatum HOM05D004989 ORTHO05D006335 2.8e-35 152.9 121 65.3
arahy.Tifrunner.gnm1.ann1.HR1U72 Arachis hypogaea HOM05D004989 ORTHO05D006335 3.6e-35 152.5 96 76.0
MCO05G313 Micromonas commoda HOM05D004989 ORTHO05D006335 3.6e-35 152.5 193 43.5
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 1.5e-33 147.1 199 40.7
Cre05.g234664 Chlamydomonas reinhardtii HOM05D004989 ORTHO05D006335 7.1e-31 138.3 202 39.1
Cpa.g.sc147.6 Carica papaya HOM05D004989 ORTHO05D006335 9.9e-25 117.9 69 79.7
SEGI_12399 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 1.3e-24 117.5 105 56.2
SEGI_35556 Sequoiadendron giganteum HOM05D004989 ORTHO05D006335 4.9e-24 115.5 103 56.3
Atru.chr4.2547 Acer truncatum HOM05D004989 ORTHO05D000586 4.6e-22 109.0 64 79.7
Cfa015379 Carpinus fangiana HOM05D000407 ORTHO05D002981 2.0e-17 93.6 107 49.5
CBR_g19747 Chara braunii HOM05D000409 ORTHO05D000184 5.7e-12 75.5 59 64.4
Actinidia08511 Actinidia chinensis HOM05D004989 ORTHO05D006335 1.6e-06 57.4 75 44.0


User provided reference genes

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