Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold39G15314 Striga asiatica HOM05D004695 ORTHO05D005372 9.1e-72 273.5 139 100.0
GSVIVG01017906001 Vitis vinifera HOM05D004695 ORTHO05D005372 7.8e-23 110.9 123 56.9
MSTRG.10006 Avicennia marina HOM05D004695 ORTHO05D005372 3.9e-22 108.6 125 57.6
SalBow2G2333 Salvia bowleyana HOM05D004695 ORTHO05D005372 4.3e-21 105.1 145 54.5
RcHm_v2.0_Chr4g0417511 Rosa chinensis HOM05D004695 ORTHO05D005372 5.2e-19 98.2 92 60.9
QL06p003781 Quercus lobata HOM05D004695 ORTHO05D005372 1.5e-18 96.7 118 54.2
Cc03_g03270 Coffea canephora HOM05D004695 ORTHO05D005372 2.0e-18 96.3 141 48.9
FvH4_4g14800 Fragaria vesca HOM05D004695 ORTHO05D005372 3.4e-18 95.5 120 49.2
FAN12G3688 Fragaria x ananassa HOM05D004695 ORTHO05D005372 3.4e-18 95.5 120 49.2
FAN22G2275 Fragaria x ananassa HOM05D004695 ORTHO05D005372 7.6e-18 94.4 120 49.2
Aqoxy2G03294 Aquilegia oxysepala HOM05D004695 ORTHO05D005372 9.9e-18 94.0 128 48.4
COL.COLO4_11008 Corchorus olitorius HOM05D004695 ORTHO05D005372 2.9e-17 92.4 123 49.6
Gorai.003G047400 Gossypium raimondii HOM05D004695 ORTHO05D005372 4.9e-17 91.7 120 46.7
Hma1.2p1_0995F.1_g245790 Hydrangea macrophylla HOM05D004695 ORTHO05D005372 4.9e-17 91.7 120 48.3
DCAR_002402 Daucus carota HOM05D004695 ORTHO05D005372 8.4e-17 90.9 136 48.5
FAN07G1591 Fragaria x ananassa HOM05D004695 ORTHO05D005372 8.4e-17 90.9 120 47.5
Gohir.D10G104100 Gossypium hirsutum HOM05D004695 ORTHO05D005372 1.1e-16 90.5 120 45.8
Gorai.011G113700 Gossypium raimondii HOM05D004695 ORTHO05D005372 1.1e-16 90.5 120 45.8
Thecc.01G113400 Theobroma cacao HOM05D004695 ORTHO05D005372 1.1e-16 90.5 121 49.6
TWI73G0302 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 1.1e-16 90.5 124 45.2
Gohir.A10G084407 Gossypium hirsutum HOM05D004695 ORTHO05D005372 2.4e-16 89.4 120 45.8
Manes.03G182700 Manihot esculenta HOM05D004695 ORTHO05D005372 2.4e-16 89.4 122 45.1
TWI09G0501 Tripterygium wilfordii HOM05D004695 ORTHO05D005372 3.2e-16 89.0 122 46.7
CANSAT78G0872 Cannabis sativa HOM05D004695 ORTHO05D005372 4.2e-16 88.6 90 60.0
Thecc.04G224700 Theobroma cacao HOM05D004695 ORTHO05D005372 4.2e-16 88.6 90 57.8
Gohir.A02G135400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 7.1e-16 87.8 120 45.8
Gohir.D03G046400 Gossypium hirsutum HOM05D004695 ORTHO05D005372 7.1e-16 87.8 120 45.8
Duzib147G1031 Durio zibethinus HOM05D004695 ORTHO05D005372 9.3e-16 87.4 132 46.2
MD13G1185600 Malus domestica HOM05D004695 ORTHO05D005372 9.3e-16 87.4 118 49.2
Potri.008G204100 Populus trichocarpa HOM05D004695 ORTHO05D005372 9.3e-16 87.4 126 46.8
Migut.G00305 Erythranthe guttata HOM05D004695 ORTHO05D005372 1.2e-15 87.0 148 48.0
Nitab4.5_0000630g0080 Nicotiana tabacum HOM05D004695 ORTHO05D005372 1.6e-15 86.7 138 44.9
TPR.G912 Trifolium pratense HOM05D004695 ORTHO05D005372 1.6e-15 86.7 91 51.6
Glyma.13G207100 Glycine max HOM05D004695 ORTHO05D005372 2.1e-15 86.3 88 54.5
Medtr4g131720 Medicago truncatula HOM05D004695 ORTHO05D005372 2.1e-15 86.3 119 45.4
Ciclev10006235m.g Citrus clementina HOM05D004695 ORTHO05D005372 2.7e-15 85.9 123 48.0
Duzib264G0758 Durio zibethinus HOM05D004695 ORTHO05D005372 2.7e-15 85.9 125 48.8
Prupe.1G153300 Prunus persica HOM05D004695 ORTHO05D005372 2.7e-15 85.9 112 48.2
Peaxi162Scf00134g02026 Petunia axillaris HOM05D004695 ORTHO05D005372 3.5e-15 85.5 141 45.4
Psat1g182680 Pisum sativum HOM05D004695 ORTHO05D005372 3.5e-15 85.5 88 53.4
Glyma.15G105500 Glycine max HOM05D004695 ORTHO05D005372 4.6e-15 85.1 88 54.5
Lalb_Chr15g0087411 Lupinus albus HOM05D004695 ORTHO05D005372 6.0e-15 84.7 89 51.7
Atru.chr4.2536 Acer truncatum HOM05D004695 ORTHO05D005372 1.0e-14 84.0 94 55.3
Duzib187G0357 Durio zibethinus HOM05D004695 ORTHO05D005372 1.0e-14 84.0 86 55.8
Medtr2g022610 Medicago truncatula HOM05D004695 ORTHO05D005372 1.3e-14 83.6 122 45.1
Ca_00631_v3 Cicer arietinum L. HOM05D004695 ORTHO05D005372 1.7e-14 83.2 123 44.7
arahy.Tifrunner.gnm1.ann1.NGDM9G Arachis hypogaea HOM05D004695 ORTHO05D005372 3.0e-14 82.4 88 53.4
arahy.Tifrunner.gnm1.ann1.P3SWUI Arachis hypogaea HOM05D004695 ORTHO05D005372 3.0e-14 82.4 88 53.4
Actinidia23502 Actinidia chinensis HOM05D004695 ORTHO05D005372 5.1e-14 81.6 136 46.3
Lj4g0022767 Lotus japonicus HOM05D004695 ORTHO05D005372 5.1e-14 81.6 88 55.7
Actinidia36986 Actinidia chinensis HOM05D004695 ORTHO05D005372 6.6e-14 81.3 128 45.3
SGA_v2.0_scaffold39G15310 Striga asiatica HOM05D004695 ORTHO05D005372 6.6e-14 81.3 98 54.1
Lalb_Chr18g0056181 Lupinus albus HOM05D004695 ORTHO05D005372 8.7e-14 80.9 121 42.1
Sabra08G0157600 Salix brachista HOM05D004695 ORTHO05D005372 8.7e-14 80.9 119 45.4
Migut.N00157 Erythranthe guttata HOM05D004695 ORTHO05D005372 1.1e-13 80.5 128 46.1
Glyma.07G258100 Glycine max HOM05D004695 ORTHO05D005372 1.5e-13 80.1 88 54.5
TAR636G3528 Trochodendron aralioides HOM05D004695 ORTHO05D005372 1.5e-13 80.1 123 44.7
CiPaw.01G161500 Carya illinoinensis HOM05D004695 ORTHO05D005372 2.5e-13 79.3 122 46.7
Phvul.006G151900 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 2.5e-13 79.3 121 43.8
Manes.15G024700 Manihot esculenta HOM05D004695 ORTHO05D005372 3.3e-13 79.0 122 45.1
PGSC0003DMG400008993 Solanum tuberosum HOM05D004695 ORTHO05D005372 3.3e-13 79.0 92 55.4
Nitab4.5_0015975g0010 Nicotiana tabacum HOM05D004695 ORTHO05D005372 4.3e-13 78.6 141 43.3
unitig_748.g8553 Utricularia gibba HOM05D004695 ORTHO05D005372 4.3e-13 78.6 141 44.7
COL.COLO4_26631 Corchorus olitorius HOM05D004695 ORTHO05D005372 5.6e-13 78.2 100 51.0
HanXRQChr10g0311131 Helianthus annuus HOM05D004695 ORTHO05D005372 5.6e-13 78.2 135 41.5
Rhsim04G0203400 Rhododendron simsii HOM05D004695 ORTHO05D005372 5.6e-13 78.2 130 39.2
Haze_00944 Corylus avellana HOM05D004695 ORTHO05D005372 7.3e-13 77.8 118 48.3
VMungo0540G1940 Vigna mungo HOM05D004695 ORTHO05D005372 7.3e-13 77.8 121 41.3
Nn1g02189 Nelumbo nucifera HOM05D004695 ORTHO05D005372 9.6e-13 77.4 118 47.5
Solyc01g079830.3 Solanum lycopersicum HOM05D004695 ORTHO05D005372 1.6e-12 76.6 91 54.9
unitig_32.g11733 Utricularia gibba HOM05D004695 ORTHO05D005372 1.6e-12 76.6 140 41.4
AT3G06070 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 2.8e-12 75.9 148 41.9
CsaV3_3G013590 Cucumis sativus L. HOM05D004695 ORTHO05D005372 2.8e-12 75.9 123 43.9
CiPaw.02G093500 Carya illinoinensis HOM05D004695 ORTHO05D005372 4.8e-12 75.1 92 50.0
ClCG05G005340 Citrullus lanatus HOM05D004695 ORTHO05D005372 6.2e-12 74.7 123 42.3
MBI17_g29941_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 6.2e-12 74.7 103 49.5
arahy.Tifrunner.gnm1.ann1.6BH6U4 Arachis hypogaea HOM05D004695 ORTHO05D005372 8.1e-12 74.3 96 43.8
Cfa015601 Carpinus fangiana HOM05D004695 ORTHO05D005372 8.1e-12 74.3 117 46.2
TPR.G36993 Trifolium pratense HOM05D004695 ORTHO05D005372 1.1e-11 73.9 90 52.2
Carub.0003s0551 Capsella rubella HOM05D004695 ORTHO05D005372 1.4e-11 73.6 148 39.9
CARHR080580 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.4e-11 73.6 91 51.6
DCAR_030605 Daucus carota HOM05D004695 ORTHO05D005372 1.4e-11 73.6 143 44.8
Phvul.003G091400 Phaseolus vulgaris HOM05D004695 ORTHO05D005372 1.4e-11 73.6 140 37.9
Oeu042788.1 Olea europaea HOM05D004695 ORTHO05D005372 4.0e-11 72.0 134 43.3
Lj6g0025020 Lotus japonicus HOM05D004695 ORTHO05D005372 6.9e-11 71.2 103 40.8
PSO170G6030 Papaver somniferum HOM05D004695 ORTHO05D005372 6.9e-11 71.2 142 41.5
VMungo1215G1766 Vigna mungo HOM05D004695 ORTHO05D005372 6.9e-11 71.2 92 47.8
BcaB01g05138 Brassica carinata HOM05D004695 ORTHO05D005372 9.0e-11 70.9 94 48.9
C03p10990 Brassica napus HOM05D004695 ORTHO05D005372 9.0e-11 70.9 94 48.9
BolC3t13568H Brassica oleracea HOM05D004695 ORTHO05D005372 9.0e-11 70.9 94 48.9
PSO302G0161 Papaver somniferum HOM05D004695 ORTHO05D005372 1.2e-10 70.5 132 43.2
Psat4g008520 Pisum sativum HOM05D004695 ORTHO05D005372 1.5e-10 70.1 95 47.4
Sp3g05020 Schrenkiella parvula HOM05D004695 ORTHO05D005372 1.5e-10 70.1 83 51.8
HanXRQChr12g0359551 Helianthus annuus HOM05D004695 ORTHO05D005372 2.0e-10 69.7 134 39.6
AL3G16910 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 2.6e-10 69.3 151 41.7
BcaC05g30060 Brassica carinata HOM05D004695 ORTHO05D005372 2.6e-10 69.3 89 49.4
DCAR_027181 Daucus carota HOM05D004695 ORTHO05D005372 3.4e-10 68.9 139 39.6
MBI19_g46840_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 3.4e-10 68.9 90 46.7
Sp6g25190 Schrenkiella parvula HOM05D004695 ORTHO05D005372 3.4e-10 68.9 112 44.6
A03p34500 Brassica napus HOM05D004695 ORTHO05D005372 4.4e-10 68.6 140 38.6
BraA03t12627Z Brassica rapa HOM05D004695 ORTHO05D005372 4.4e-10 68.6 140 38.6
Carub.0006s1752 Capsella rubella HOM05D004695 ORTHO05D005372 4.4e-10 68.6 99 46.5
MBI19_g16320_MAGBIO Magnolia biondii HOM05D004695 ORTHO05D005372 5.8e-10 68.2 84 48.8
BcaC04g18589 Brassica carinata HOM05D004695 ORTHO05D005372 7.6e-10 67.8 123 43.9
A10p20440 Brassica napus HOM05D004695 ORTHO05D005372 7.6e-10 67.8 123 44.7
C09p57070 Brassica napus HOM05D004695 ORTHO05D005372 7.6e-10 67.8 123 43.9
BraA10t44114Z Brassica rapa HOM05D004695 ORTHO05D005372 7.6e-10 67.8 123 44.7
ECA234G1541 Erigeron canadensis HOM05D000219 ORTHO05D004649 7.6e-10 67.8 75 53.3
A02p05310 Brassica napus HOM05D004695 ORTHO05D005372 1.3e-09 67.0 92 48.9
A03p09410 Brassica napus HOM05D004695 ORTHO05D005372 2.2e-09 66.2 140 39.3
BraA03t10259Z Brassica rapa HOM05D004695 ORTHO05D005372 2.2e-09 66.2 140 39.3
Thhalv10021691m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 2.2e-09 66.2 143 39.9
Sed0015868 Sechium edule HOM05D004695 ORTHO05D005372 2.2e-09 66.2 92 42.4
THA.LOC104818805 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 2.2e-09 66.2 96 51.0
BcaB08g36595 Brassica carinata HOM05D004695 ORTHO05D005372 2.9e-09 65.9 130 43.1
C05p61180 Brassica napus HOM05D004695 ORTHO05D005372 2.9e-09 65.9 143 37.1
PGR142G2632 Punica granatum HOM05D004695 ORTHO05D005372 2.9e-09 65.9 111 42.3
Aa31LG5G16560 Aethionema arabicum HOM05D004695 ORTHO05D005372 3.8e-09 65.5 107 41.1
A05p41930 Brassica napus HOM05D004695 ORTHO05D005372 4.9e-09 65.1 120 41.7
Dinv38408 Davidia involucrata HOM05D004695 ORTHO05D005372 4.9e-09 65.1 103 46.6
THA.LOC104822307 Tarenaya hassleriana HOM05D004695 ORTHO05D005372 4.9e-09 65.1 107 43.0
Sc19g0004420 Simmondsia chinensis HOM05D004695 ORTHO05D005372 6.4e-09 64.7 126 39.7
BcaB04g19218 Brassica carinata HOM05D004695 ORTHO05D005372 8.4e-09 64.3 144 40.3
BcaB04g19219 Brassica carinata HOM05D004695 ORTHO05D005372 8.4e-09 64.3 144 40.3
Eucgr.B01119 Eucalyptus grandis HOM05D004695 ORTHO05D005372 8.4e-09 64.3 125 38.4
BcaB01g04872 Brassica carinata HOM05D004695 ORTHO05D005372 1.1e-08 63.9 137 40.9
CARHR193760 Cardamine hirsuta HOM05D004695 ORTHO05D005372 1.1e-08 63.9 136 39.7
Dinv44493 Davidia involucrata HOM05D003236 ORTHO05D003620 1.1e-08 63.9 90 45.6
EL10As3g23294 Beta vulgaris HOM05D004695 ORTHO05D005372 1.4e-08 63.5 125 40.8
AL6G30640 Arabidopsis lyrata HOM05D004695 ORTHO05D005372 1.9e-08 63.2 96 46.9
BraA02t05489Z Brassica rapa HOM05D004695 ORTHO05D005372 1.9e-08 63.2 134 41.0
BcaC03g13650 Brassica carinata HOM05D004695 ORTHO05D005372 2.4e-08 62.8 145 37.9
BNapus_Darmor_BZH_scaffold_38p02720 Brassica napus HOM05D004695 ORTHO05D005372 2.4e-08 62.8 145 37.9
C03p41960 Brassica napus HOM05D004695 ORTHO05D005372 2.4e-08 62.8 140 37.9
BolC2t06944H Brassica oleracea HOM05D004695 ORTHO05D005372 2.4e-08 62.8 145 37.9
AT5G19190 Arabidopsis thaliana HOM05D004695 ORTHO05D005372 3.2e-08 62.4 116 43.1
BcaC01g04322 Brassica carinata HOM05D004695 ORTHO05D005372 4.2e-08 62.0 144 39.6
BcaB05g23377 Brassica carinata HOM05D004695 ORTHO05D005372 5.4e-08 61.6 142 38.7
BraA01t04453Z Brassica rapa HOM05D004695 ORTHO05D005372 5.4e-08 61.6 110 40.9
BolC3t16478H Brassica oleracea HOM05D004695 ORTHO05D005372 7.1e-08 61.2 142 38.7
Thhalv10014937m.g Eutrema salsugineum HOM05D004695 ORTHO05D005372 9.3e-08 60.8 109 42.2
BcaC09g47874 Brassica carinata HOM05D004695 ORTHO05D005372 1.6e-07 60.1 110 40.9
BolC1t05639H Brassica oleracea HOM05D004695 ORTHO05D005372 1.6e-07 60.1 110 40.9
Aa31LG11G10450 Aethionema arabicum HOM05D004695 ORTHO05D005372 2.1e-07 59.7 130 41.5
AUR62038192 Chenopodium quinoa HOM05D004695 ORTHO05D005372 6.0e-07 58.2 96 44.8
unitig_899.g14848 Utricularia gibba HOM05D004695 ORTHO05D005372 5.1e-06 55.1 140 35.0
BcaB04g21321 Brassica carinata HOM05D004695 ORTHO05D005372 8.7e-06 54.3 140 37.9


User provided reference genes

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