Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold39G15312 Striga asiatica HOM05D002945 ORTHO05D405753 4.7e-146 521.2 258 100.0
SGA_v2.0_scaffold40G15663 Striga asiatica HOM05D002945 ORTHO05D003314 4.7e-29 132.5 170 53.5
SGA_v2.0_scaffold332G48959 Striga asiatica HOM05D002945 ORTHO05D003314 2.2e-23 113.6 253 37.2
Migut.B00623 Erythranthe guttata HOM05D002945 ORTHO05D003314 1.7e-15 87.4 70 67.1
MSTRG.20300 Avicennia marina HOM05D002945 ORTHO05D003314 1.9e-14 84.0 258 31.4
MSTRG.16573 Avicennia marina HOM05D002945 ORTHO05D003314 3.2e-14 83.2 115 43.5
SGA_v2.0_scaffold41G15789 Striga asiatica HOM05D002945 ORTHO05D398964 2.7e-13 80.1 121 44.6
Cpa.g.sc468.2 Carica papaya HOM05D002945 ORTHO05D003314 3.6e-13 79.7 53 71.7
Nitab4.5_0001254g0050 Nicotiana tabacum HOM05D002945 ORTHO05D003314 4.7e-13 79.3 78 56.4
Oeu030279.1 Olea europaea HOM05D002945 ORTHO05D003314 4.7e-13 79.3 245 30.2
Oeu026163.1 Olea europaea HOM05D002945 ORTHO05D003314 8.0e-13 78.6 225 31.6
CSS0002039 Camellia sinensis var. sinensis HOM05D002945 ORTHO05D003314 1.0e-12 78.2 64 62.5
Solyc10g047210.1 Solanum lycopersicum HOM05D002945 ORTHO05D003314 1.4e-12 77.8 86 54.7
PGSC0003DMG400017694 Solanum tuberosum HOM05D002945 ORTHO05D003314 1.4e-12 77.8 78 56.4
Dinv09044 Davidia involucrata HOM05D002945 ORTHO05D003314 1.8e-12 77.4 203 32.0
Lalb_Chr18g0060581 Lupinus albus HOM05D002945 ORTHO05D003314 1.8e-12 77.4 53 69.8
Sopen10g017450 Solanum pennellii HOM05D002945 ORTHO05D003314 1.8e-12 77.4 61 65.6
Nitab4.5_0000078g0060 Nicotiana tabacum HOM05D002945 ORTHO05D003314 2.3e-12 77.0 53 67.9
arahy.Tifrunner.gnm1.ann1.0S4473 Arachis hypogaea HOM05D002945 ORTHO05D003314 3.0e-12 76.6 53 71.7
arahy.Tifrunner.gnm1.ann1.DR9VHI Arachis hypogaea HOM05D002945 ORTHO05D003314 3.0e-12 76.6 53 71.7
Eucgr.I02675 Eucalyptus grandis HOM05D002945 ORTHO05D003314 3.0e-12 76.6 53 71.7
FvH4_1g19990 Fragaria vesca HOM05D002945 ORTHO05D003314 4.0e-12 76.3 53 67.9
FAN19G0967 Fragaria x ananassa HOM05D002945 ORTHO05D003314 4.0e-12 76.3 53 67.9
FAN23G0001 Fragaria x ananassa HOM05D002945 ORTHO05D003314 4.0e-12 76.3 53 67.9
FAN26G0620 Fragaria x ananassa HOM05D002945 ORTHO05D003314 4.0e-12 76.3 53 67.9
FAN28G0043 Fragaria x ananassa HOM05D002945 ORTHO05D003314 4.0e-12 76.3 53 67.9
Peaxi162Scf00152g00111 Petunia axillaris HOM05D002945 ORTHO05D003314 4.0e-12 76.3 74 55.4
TWI23G0721 Tripterygium wilfordii HOM05D002945 ORTHO05D003314 4.0e-12 76.3 53 67.9
Ciclev10028588m.g Citrus clementina HOM05D002945 ORTHO05D003314 5.2e-12 75.9 58 63.8
DCAR_001794 Daucus carota HOM05D002945 ORTHO05D003314 5.2e-12 75.9 96 50.0
HanXRQChr09g0245851 Helianthus annuus HOM05D002945 ORTHO05D003314 5.2e-12 75.9 53 69.8
Atru.chr6.1134 Acer truncatum HOM05D002945 ORTHO05D003314 6.8e-12 75.5 80 50.0
Manes.06G009900 Manihot esculenta HOM05D002945 ORTHO05D003314 8.8e-12 75.1 59 62.7
RcHm_v2.0_Chr2g0111931 Rosa chinensis HOM05D002945 ORTHO05D003314 8.8e-12 75.1 53 67.9
Sc06g0000140 Simmondsia chinensis HOM05D002945 ORTHO05D003314 8.8e-12 75.1 53 64.2
ATR0665G076 Amborella trichopoda HOM05D002945 ORTHO05D003314 1.2e-11 74.7 64 60.9
CiPaw.06G152500 Carya illinoinensis HOM05D002945 ORTHO05D003314 1.2e-11 74.7 108 43.5
ECA236G3392 Erigeron canadensis HOM05D002945 ORTHO05D003314 1.5e-11 74.3 53 67.9
Peaxi162Scf00003g00362 Petunia axillaris HOM05D002945 ORTHO05D003314 1.5e-11 74.3 62 58.1
Potri.001G209800 Populus trichocarpa HOM05D002945 ORTHO05D003314 1.5e-11 74.3 64 57.8
Sabra01G0162000 Salix brachista HOM05D002945 ORTHO05D003314 1.5e-11 74.3 64 56.2
Sabra03G0011800 Salix brachista HOM05D002945 ORTHO05D003314 1.5e-11 74.3 64 56.2
Lsat_1_v5_gn_7_80680 Lactuca sativa HOM05D002945 ORTHO05D003314 2.0e-11 73.9 53 66.0
Phvul.002G207700 Phaseolus vulgaris HOM05D002945 ORTHO05D003314 2.0e-11 73.9 53 67.9
Psat7g097720 Pisum sativum HOM05D002945 ORTHO05D003314 2.0e-11 73.9 68 57.4
Hund08153 Selenicereus undatus HOM05D002945 ORTHO05D003314 2.0e-11 73.9 53 66.0
Cfa005621 Carpinus fangiana HOM05D002945 ORTHO05D003314 2.6e-11 73.6 94 47.9
Glyma.05G118700 Glycine max HOM05D002945 ORTHO05D003314 2.6e-11 73.6 53 67.9
Lsat_1_v5_gn_9_117401 Lactuca sativa HOM05D002945 ORTHO05D003314 2.6e-11 73.6 98 41.8
MD05G1042400 Malus domestica HOM05D002945 ORTHO05D003314 2.6e-11 73.6 64 57.8
Glyma.08G073800 Glycine max HOM05D002945 ORTHO05D003314 3.4e-11 73.2 64 59.4
Hma1.2p1_0101F.1_g049240 Hydrangea macrophylla HOM05D002945 ORTHO05D003314 3.4e-11 73.2 64 56.2
VMungo0251G3142 Vigna mungo HOM05D002945 ORTHO05D003314 3.4e-11 73.2 53 67.9
CAN.G1228.11 Capsicum annuum HOM05D002945 ORTHO05D003314 4.4e-11 72.8 53 66.0
Ca_18342_v3 Cicer arietinum L. HOM05D002945 ORTHO05D003314 5.7e-11 72.4 64 57.8
Haze_10645 Corylus avellana HOM05D002945 ORTHO05D003314 5.7e-11 72.4 94 47.9
Nn2g14847 Nelumbo nucifera HOM05D002945 ORTHO05D003314 5.7e-11 72.4 53 66.0
Potri.003G020500 Populus trichocarpa HOM05D002945 ORTHO05D003314 5.7e-11 72.4 64 54.7
PGR142G4325 Punica granatum HOM05D002945 ORTHO05D003314 5.7e-11 72.4 64 54.7
Rhsim05G0108700 Rhododendron simsii HOM05D002945 ORTHO05D003314 5.7e-11 72.4 68 57.4
Sed0009555 Sechium edule HOM05D002945 ORTHO05D003314 5.7e-11 72.4 53 66.0
AUR62036511 Chenopodium quinoa HOM05D002945 ORTHO05D003314 7.5e-11 72.0 69 59.4
Prupe.8G059200 Prunus persica HOM05D002945 ORTHO05D003314 7.5e-11 72.0 64 53.1
A09p08520 Brassica napus HOM05D002945 ORTHO05D003314 1.3e-10 71.2 53 64.2
C09p09650 Brassica napus HOM05D002945 ORTHO05D003314 1.3e-10 71.2 53 64.2
BolC9t53876H Brassica oleracea HOM05D002945 ORTHO05D003314 1.3e-10 71.2 53 64.2
BraA09t36501Z Brassica rapa HOM05D002945 ORTHO05D003314 1.3e-10 71.2 53 64.2
Manes.14G167200 Manihot esculenta HOM05D002945 ORTHO05D003314 1.3e-10 71.2 68 51.5
Medtr4g094262 Medicago truncatula HOM05D002945 ORTHO05D003314 1.3e-10 71.2 53 66.0
Sed0010074 Sechium edule HOM05D002945 ORTHO05D003314 1.3e-10 71.2 53 64.2
GSVIVG01029786001 Vitis vinifera HOM05D002945 ORTHO05D003314 1.3e-10 71.2 64 54.7
CANSAT11G1265 Cannabis sativa HOM05D002945 ORTHO05D003314 1.7e-10 70.9 53 62.3
Lj4g0014294 Lotus japonicus HOM05D002945 ORTHO05D003314 1.7e-10 70.9 53 66.0
SEGI_19382 Sequoiadendron giganteum HOM05D002945 ORTHO05D003314 1.7e-10 70.9 53 66.0
AL8G41360 Arabidopsis lyrata HOM05D002945 ORTHO05D003314 2.2e-10 70.5 82 53.7
CDE10G1288 Ceratophyllum demersum HOM05D002945 ORTHO05D003314 2.2e-10 70.5 64 57.8
AUR62040091 Chenopodium quinoa HOM05D002945 ORTHO05D003314 2.2e-10 70.5 70 58.6
CsaV3_4G009340 Cucumis sativus L. HOM05D002945 ORTHO05D003314 2.2e-10 70.5 53 64.2
THA.LOC104819335 Tarenaya hassleriana HOM05D002945 ORTHO05D003314 2.2e-10 70.5 79 48.1
Aqoxy2G03233 Aquilegia oxysepala HOM05D002945 ORTHO05D003314 2.8e-10 70.1 53 64.2
Cc02_g21700 Coffea canephora HOM05D002945 ORTHO05D003314 2.8e-10 70.1 53 66.0
Thhalv10004233m.g Eutrema salsugineum HOM05D002945 ORTHO05D003314 2.8e-10 70.1 68 58.8
Hma1.2p1_0522F.1_g171550 Hydrangea macrophylla HOM05D002945 ORTHO05D003314 2.8e-10 70.1 58 63.8
TAR381G0256 Trochodendron aralioides HOM05D002945 ORTHO05D003314 2.8e-10 70.1 53 62.3
AT5G64090 Arabidopsis thaliana HOM05D002945 ORTHO05D003314 3.7e-10 69.7 53 64.2
CARHR278000 Cardamine hirsuta HOM05D002945 ORTHO05D003314 3.7e-10 69.7 53 64.2
Dinv24203 Davidia involucrata HOM05D002945 ORTHO05D003314 3.7e-10 69.7 64 53.1
Sp2g27160 Schrenkiella parvula HOM05D002945 ORTHO05D003314 3.7e-10 69.7 53 64.2
MELO3C019024.2 Cucumis melo HOM05D002945 ORTHO05D003314 4.8e-10 69.3 53 62.3
AUR62033876 Chenopodium quinoa HOM05D002945 ORTHO05D003314 6.3e-10 68.9 70 55.7
MD10G1049000 Malus domestica HOM05D002945 ORTHO05D003314 6.3e-10 68.9 53 62.3
TAR625G1024 Trochodendron aralioides HOM05D002945 ORTHO05D003314 6.3e-10 68.9 53 62.3
Aa31LG1G17830 Aethionema arabicum HOM05D002945 ORTHO05D003314 8.3e-10 68.6 53 60.4
AUR62040514 Chenopodium quinoa HOM05D002945 ORTHO05D003314 8.3e-10 68.6 70 57.1
QL06p006875 Quercus lobata HOM05D002945 ORTHO05D003314 8.3e-10 68.6 53 62.3
ECA240G1570 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.1e-09 68.2 53 62.3
Carub.0008s2487 Capsella rubella HOM05D002945 ORTHO05D003314 2.4e-09 67.0 53 62.3
PSO210G1162 Papaver somniferum HOM05D002945 ORTHO05D003314 2.4e-09 67.0 51 66.7
PSO447G0201 Papaver somniferum HOM05D002945 ORTHO05D003314 2.4e-09 67.0 51 66.7
Zm00001eb366420 Zea mays HOM05D002945 ORTHO05D003314 4.1e-09 66.2 72 48.6
Zm00001eb424750 Zea mays HOM05D002945 ORTHO05D003314 4.1e-09 66.2 72 48.6
Gohir.D01G011400 Gossypium hirsutum HOM05D002945 ORTHO05D003314 5.4e-09 65.9 53 58.5
Gorai.002G013300 Gossypium raimondii HOM05D002945 ORTHO05D003314 5.4e-09 65.9 53 58.5
Duzib052G0291 Durio zibethinus HOM05D002945 ORTHO05D003314 9.1e-09 65.1 53 60.4
Duzib132G0730 Durio zibethinus HOM05D002945 ORTHO05D003314 9.1e-09 65.1 53 60.4
EL10Ac7g16506 Beta vulgaris HOM05D002945 ORTHO05D003314 1.2e-08 64.7 70 52.9
SEGI_11393 Sequoiadendron giganteum HOM05D002945 ORTHO05D003314 1.2e-08 64.7 53 58.5
unitig_8.g3484 Utricularia gibba HOM05D002945 ORTHO05D003314 1.6e-08 64.3 53 60.4
COL.COLO4_33852 Corchorus olitorius HOM05D002945 ORTHO05D003314 2.0e-08 63.9 53 58.5
Cpa.g.sc48.183 Carica papaya HOM05D002945 ORTHO05D003314 2.7e-08 63.5 58 51.7
HPP92_027808 Vanilla planifolia HOM05D002945 ORTHO05D003314 2.7e-08 63.5 64 51.6
Gohir.A12G014600 Gossypium hirsutum HOM05D002945 ORTHO05D003314 3.5e-08 63.2 46 65.2
Os11g0169600 Oryza sativa ssp. japonica HOM05D002945 ORTHO05D003314 3.5e-08 63.2 59 52.5
Thecc.02G141800 Theobroma cacao HOM05D002945 ORTHO05D003314 3.5e-08 63.2 46 65.2
Zm00001eb122600 Zea mays HOM05D002945 ORTHO05D003314 4.5e-08 62.8 59 54.2
HPP92_004401 Vanilla planifolia HOM05D006264 ORTHO05D007739 5.9e-08 62.4 64 50.0
Gorai.008G015100 Gossypium raimondii HOM05D002945 ORTHO05D003314 1.0e-07 61.6 46 63.0
Gohir.D12G015000 Gossypium hirsutum HOM05D002945 ORTHO05D003314 1.7e-07 60.8 46 63.0
EL10Ac1g00525 Beta vulgaris HOM05D002945 ORTHO05D003314 3.8e-07 59.7 55 56.4
AagrBONN_evm.TU.Sc2ySwM_117.2412 Anthoceros agrestis HOM05D002945 ORTHO05D003314 6.5e-07 58.9 49 49.0
SMO347G0067 Selaginella moellendorffii HOM05D002945 ORTHO05D003314 1.9e-06 57.4 58 44.8
PGR119G0860 Punica granatum HOM05D002945 ORTHO05D003314 4.2e-06 56.2 53 52.8
TAR623G0549 Trochodendron aralioides HOM05D002945 ORTHO05D003314 4.2e-06 56.2 53 50.9
Nn7g37276 Nelumbo nucifera HOM05D002945 ORTHO05D003314 5.5e-06 55.8 53 50.9
CDE10G0321 Ceratophyllum demersum HOM05D002945 ORTHO05D003314 7.2e-06 55.5 39 66.7
Manes.06G067900 Manihot esculenta HOM05D002945 ORTHO05D003314 7.2e-06 55.5 53 54.7
THA.LOC104799588 Tarenaya hassleriana HOM05D002945 ORTHO05D003314 7.2e-06 55.5 56 55.4
GSVIVG01037470001 Vitis vinifera HOM05D002945 ORTHO05D003314 7.2e-06 55.5 53 50.9
A03p10410 Brassica napus HOM05D002945 ORTHO05D003314 9.4e-06 55.1 148 34.5
BraA03t10353Z Brassica rapa HOM05D002945 ORTHO05D003314 9.4e-06 55.1 148 34.5
MBI13_g09970_MAGBIO Magnolia biondii HOM05D002945 ORTHO05D003314 9.4e-06 55.1 53 50.9
Potri.004G195900 Populus trichocarpa HOM05D002945 ORTHO05D003314 9.4e-06 55.1 55 52.7


User provided reference genes

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