Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 2.0e-118 429.1 214 100.0
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.1e-103 380.2 214 89.3
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 3.3e-97 358.6 217 86.2
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 1.8e-95 352.8 214 83.6
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 8.4e-93 344.0 214 81.8
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 1.2e-91 340.1 214 81.3
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 2.1e-91 339.3 214 80.8
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.0e-90 337.0 215 80.0
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.3e-90 336.7 215 81.9
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 3.9e-90 335.1 217 79.7
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 5.1e-90 334.7 216 80.6
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 5.1e-90 334.7 214 81.3
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 1.1e-89 333.6 216 80.6
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.9e-89 332.8 215 80.5
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 4.3e-89 331.6 215 80.5
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 9.7e-89 330.5 215 80.0
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 1.3e-88 330.1 214 80.4
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.2e-88 329.3 216 79.2
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 2.8e-88 328.9 217 77.4
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 3.7e-88 328.6 215 81.4
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 4.8e-88 328.2 216 81.0
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 1.1e-87 327.0 214 78.5
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 1.1e-87 327.0 215 80.0
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 1.4e-87 326.6 215 78.1
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 1.8e-87 326.2 215 79.1
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 5.3e-87 324.7 215 77.7
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 5.3e-87 324.7 216 77.3
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 6.9e-87 324.3 215 77.7
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 6.9e-87 324.3 214 79.0
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 9.0e-87 323.9 214 79.4
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 1.5e-86 323.2 215 80.5
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 2.0e-86 322.8 215 78.6
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 2.6e-86 322.4 215 78.1
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 4.5e-86 321.6 218 78.0
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.5e-86 321.6 215 77.2
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 5.9e-86 321.2 218 78.4
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 5.9e-86 321.2 215 80.0
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 7.7e-86 320.9 216 77.3
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 7.7e-86 320.9 216 77.3
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.0e-85 320.5 216 77.3
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.0e-85 320.5 216 77.3
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 1.3e-85 320.1 214 78.0
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 1.3e-85 320.1 216 78.7
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 1.3e-85 320.1 215 79.1
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.3e-85 320.1 214 76.6
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 2.9e-85 318.9 212 77.4
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.8e-85 318.5 216 78.2
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 3.8e-85 318.5 215 77.2
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.8e-85 318.5 213 77.9
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 5.0e-85 318.2 216 76.9
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 6.5e-85 317.8 215 75.8
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 6.5e-85 317.8 215 76.7
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 8.5e-85 317.4 216 76.9
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 8.5e-85 317.4 217 76.0
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.1e-84 317.0 214 78.5
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.4e-84 316.6 215 76.7
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.4e-84 316.6 213 77.5
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.4e-84 316.6 215 77.7
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.4e-84 316.6 216 77.8
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.9e-84 316.2 213 77.0
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.9e-84 316.2 215 78.6
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 2.5e-84 315.8 216 75.9
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 2.5e-84 315.8 218 77.1
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.2e-84 315.5 216 77.8
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 3.2e-84 315.5 217 76.0
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 3.2e-84 315.5 216 77.3
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 3.2e-84 315.5 212 78.3
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 4.2e-84 315.1 225 75.6
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 7.2e-84 314.3 222 76.6
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 9.4e-84 313.9 215 76.3
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 1.2e-83 313.5 223 74.4
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 1.6e-83 313.2 217 74.7
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 2.1e-83 312.8 212 78.8
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.6e-83 312.0 213 77.0
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 3.6e-83 312.0 217 77.0
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 4.6e-83 311.6 217 76.5
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 4.6e-83 311.6 214 75.7
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 7.9e-83 310.8 216 76.4
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.0e-82 310.5 213 76.5
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.8e-82 309.7 216 75.9
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.8e-82 309.7 213 77.0
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 1.1e-81 307.0 213 74.6
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.5e-81 306.6 216 75.9
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 4.3e-81 305.1 215 75.8
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 5.7e-81 304.7 215 73.5
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 5.7e-81 304.7 215 74.0
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.3e-80 303.5 217 75.6
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 2.8e-80 302.4 216 75.0
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.7e-80 302.0 214 74.8
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.3e-80 301.2 204 78.9
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 8.2e-80 300.8 204 78.9
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.8e-79 299.7 204 78.9
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.8e-79 299.7 204 78.9
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 2.4e-79 299.3 217 74.2
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 5.3e-79 298.1 216 72.2
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 5.9e-78 294.7 204 76.5
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 7.7e-78 294.3 214 72.9
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 1.0e-77 293.9 215 74.0
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.0e-77 293.9 213 72.8
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.0e-77 293.9 217 73.3
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 1.3e-77 293.5 214 73.8
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 1.3e-77 293.5 217 71.9
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 1.7e-77 293.1 216 73.1
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 2.2e-77 292.7 213 74.2
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 2.9e-77 292.4 215 73.5
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 3.8e-77 292.0 214 73.4
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.0e-77 291.6 205 74.6
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 6.5e-77 291.2 181 80.7
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 1.1e-76 290.4 187 80.7
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 1.1e-76 290.4 217 72.4
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 1.4e-76 290.0 148 92.6
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.4e-76 290.0 179 81.0
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 1.9e-76 289.7 214 72.0
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 2.5e-76 289.3 213 71.4
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 9.4e-76 287.3 213 71.8
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 1.2e-75 287.0 213 72.8
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 1.6e-75 286.6 214 71.0
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 2.7e-75 285.8 213 71.4
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 6.1e-75 284.6 215 72.6
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.4e-74 283.5 215 71.2
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 1.8e-74 283.1 213 72.3
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 2.3e-74 282.7 196 75.5
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.0e-74 282.3 214 71.0
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 3.9e-74 282.0 214 70.1
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 8.8e-74 280.8 188 77.1
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 6.3e-72 274.6 214 72.4
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 6.3e-72 274.6 214 72.4
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 1.4e-71 273.5 191 73.8
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 3.1e-71 272.3 218 68.8
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 9.1e-71 270.8 187 74.3
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 2.6e-70 269.2 199 69.8
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 7.7e-70 267.7 146 85.6
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.0e-69 267.3 215 70.7
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 6.5e-69 264.6 199 69.3
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.5e-68 263.5 165 78.8
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 1.9e-68 263.1 162 79.0
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 2.5e-68 262.7 150 83.3
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 4.2e-68 261.9 217 65.4
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 5.5e-68 261.5 203 69.5
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 7.2e-68 261.2 160 80.0
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.7e-67 258.5 221 65.2
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 4.0e-66 255.4 216 66.2
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 5.3e-63 245.0 161 75.2
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.6e-59 233.4 143 77.6
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 4.7e-59 231.9 176 65.3
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 6.8e-58 228.0 169 66.9
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 5.4e-55 218.4 218 60.1
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.5e-52 209.5 215 60.5
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 2.8e-43 179.5 212 52.8
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 7.5e-41 171.4 92 89.1
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 7.0e-31 138.3 72 93.1
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 1.5e-17 94.0 112 56.2
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 4.4e-17 92.4 112 57.1
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 2.9e-16 89.7 112 56.2
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 3.0e-13 79.7 94 52.1


User provided reference genes

Program Settings