Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold39G15244 Striga asiatica HOM05D003961 ORTHO05D004528 3.2e-215 751.5 392 100.0
MSTRG.4028 Avicennia marina HOM05D003961 ORTHO05D004528 3.8e-131 472.2 396 66.2
MSTRG.9986 Avicennia marina HOM05D003961 ORTHO05D004528 1.9e-127 459.9 403 65.3
Migut.G00334 Erythranthe guttata HOM05D003961 ORTHO05D004528 2.5e-127 459.5 404 64.1
Cc03_g03700 Coffea canephora HOM05D003961 ORTHO05D004528 5.6e-127 458.4 398 65.6
Dinv13990 Davidia involucrata HOM05D003961 ORTHO05D004528 5.6e-127 458.4 402 63.7
Oeu050277.1 Olea europaea HOM05D003961 ORTHO05D004528 2.4e-125 453.0 398 64.8
SalBow2G1240 Salvia bowleyana HOM05D003961 ORTHO05D004528 5.3e-125 451.8 404 64.4
GSVIVG01017963001 Vitis vinifera HOM05D003961 ORTHO05D004528 1.2e-124 450.7 405 63.7
Lj6A609T80 Lonicera japonica HOM05D003961 ORTHO05D004528 5.8e-124 448.4 398 63.8
Peaxi162Scf00092g01211 Petunia axillaris HOM05D003961 ORTHO05D004528 1.7e-123 446.8 398 63.3
Ciclev10005024m.g Citrus clementina HOM05D003961 ORTHO05D004528 1.2e-121 440.7 406 62.3
Dinv44530 Davidia involucrata HOM05D003961 ORTHO05D004528 1.2e-121 440.7 402 62.2
Oeu023394.1 Olea europaea HOM05D003961 ORTHO05D004528 1.2e-121 440.7 399 62.9
CAN.G907.4 Capsicum annuum HOM05D003961 ORTHO05D004528 2.1e-121 439.9 402 62.2
QL06p002667 Quercus lobata HOM05D003961 ORTHO05D004528 3.5e-121 439.1 405 62.0
Cfa015636 Carpinus fangiana HOM05D003961 ORTHO05D004528 6.0e-121 438.3 402 62.4
Solyc09g075970.3 Solanum lycopersicum HOM05D003961 ORTHO05D004528 6.0e-121 438.3 398 62.6
Prupe.1G012800 Prunus persica HOM05D003961 ORTHO05D004528 7.9e-121 438.0 405 60.7
Sopen09g030800 Solanum pennellii HOM05D003961 ORTHO05D004528 1.8e-120 436.8 396 62.6
CiPaw.01G165200 Carya illinoinensis HOM05D003961 ORTHO05D004528 2.3e-120 436.4 407 61.9
Nitab4.5_0000043g0220 Nicotiana tabacum HOM05D003961 ORTHO05D004528 2.3e-120 436.4 397 62.2
Potri.010G088300 Populus trichocarpa HOM05D003961 ORTHO05D004528 3.9e-120 435.6 405 62.2
Actinidia23507 Actinidia chinensis HOM05D003961 ORTHO05D004528 5.1e-120 435.3 398 63.3
Potri.008G152100 Populus trichocarpa HOM05D003961 ORTHO05D004528 5.1e-120 435.3 405 62.2
Atru.ctg752_3.90 Acer truncatum HOM05D003961 ORTHO05D004528 8.7e-120 434.5 405 61.0
PGSC0003DMG400030080 Solanum tuberosum HOM05D003961 ORTHO05D004528 1.5e-119 433.7 398 62.1
MD13G1192100 Malus domestica HOM05D003961 ORTHO05D004528 3.3e-119 432.6 408 60.8
Sabra10G0054500 Salix brachista HOM05D003961 ORTHO05D004528 4.3e-119 432.2 405 61.5
PGR004G2370 Punica granatum HOM05D003961 ORTHO05D004528 5.6e-119 431.8 398 62.1
FvH4_4g15420 Fragaria vesca HOM05D003961 ORTHO05D004528 7.4e-119 431.4 402 60.4
FAN12G2300 Fragaria x ananassa HOM05D003961 ORTHO05D004528 7.4e-119 431.4 402 60.4
CiPaw.02G096900 Carya illinoinensis HOM05D003961 ORTHO05D004528 1.6e-118 430.3 404 61.1
FAN07G0246 Fragaria x ananassa HOM05D003961 ORTHO05D004528 3.7e-118 429.1 402 60.2
COL.COLO4_05309 Corchorus olitorius HOM05D003961 ORTHO05D004528 4.8e-118 428.7 401 61.3
FAN22G1591 Fragaria x ananassa HOM05D003961 ORTHO05D004528 8.1e-118 427.9 402 59.7
FAN17G1073 Fragaria x ananassa HOM05D003961 ORTHO05D004528 3.1e-117 426.0 400 59.2
Cpa.g.sc58.116 Carica papaya HOM05D003961 ORTHO05D004528 4.0e-117 425.6 401 61.6
DCAR_030632 Daucus carota HOM05D003961 ORTHO05D004528 4.0e-117 425.6 400 60.5
RcHm_v2.0_Chr4g0416361 Rosa chinensis HOM05D003961 ORTHO05D004528 6.9e-117 424.9 408 60.3
Thecc.04G230700 Theobroma cacao HOM05D003961 ORTHO05D004528 9.0e-117 424.5 398 61.6
Eucgr.H03517 Eucalyptus grandis HOM05D003961 ORTHO05D004528 1.2e-116 424.1 400 61.8
Glyma.20G145500 Glycine max HOM05D003961 ORTHO05D004528 1.2e-116 424.1 397 59.9
VMungo0720G2903 Vigna mungo HOM05D003961 ORTHO05D004528 4.5e-116 422.2 397 59.9
Manes.15G028400 Manihot esculenta HOM05D003961 ORTHO05D004528 5.8e-116 421.8 402 59.7
Phvul.007G056700 Phaseolus vulgaris HOM05D003961 ORTHO05D004528 5.8e-116 421.8 397 60.2
Gorai.005G042200 Gossypium raimondii HOM05D003961 ORTHO05D004528 7.6e-116 421.4 400 59.8
Nn1g02291 Nelumbo nucifera HOM05D003961 ORTHO05D004528 1.0e-115 421.0 405 59.5
arahy.Tifrunner.gnm1.ann1.6SSG9H Arachis hypogaea HOM05D003961 ORTHO05D004528 1.7e-115 420.2 406 59.9
arahy.Tifrunner.gnm1.ann1.KTSS0P Arachis hypogaea HOM05D003961 ORTHO05D004528 1.7e-115 420.2 402 60.2
Sabra08G0115900 Salix brachista HOM05D003961 ORTHO05D004528 1.7e-115 420.2 403 60.0
TAR362G0627 Trochodendron aralioides HOM05D003961 ORTHO05D004528 2.9e-115 419.5 403 60.3
Glyma.10G248600 Glycine max HOM05D003961 ORTHO05D004528 3.8e-115 419.1 397 59.4
Gohir.A02G031600 Gossypium hirsutum HOM05D003961 ORTHO05D004528 6.5e-115 418.3 400 59.2
Gohir.D02G038300 Gossypium hirsutum HOM05D003961 ORTHO05D004528 6.5e-115 418.3 400 59.5
EL10Ac3g06424 Beta vulgaris HOM05D003961 ORTHO05D004528 1.4e-114 417.2 411 58.9
TAR365G0124 Trochodendron aralioides HOM05D003961 ORTHO05D004528 2.5e-114 416.4 402 58.7
Aqoxy5G00479 Aquilegia oxysepala HOM05D003961 ORTHO05D004528 3.2e-114 416.0 404 58.7
CANSAT78G1057 Cannabis sativa HOM05D003961 ORTHO05D004528 3.2e-114 416.0 415 58.3
HanXRQChr04g0109101 Helianthus annuus HOM05D003961 ORTHO05D004528 4.2e-114 415.6 392 59.2
Duzib052G0053 Durio zibethinus HOM05D003961 ORTHO05D004528 5.5e-114 415.2 398 59.8
Rhsim02G0023600 Rhododendron simsii HOM05D003961 ORTHO05D004528 5.5e-114 415.2 401 59.6
Peaxi162Scf00642g00006 Petunia axillaris HOM05D003961 ORTHO05D004528 9.3e-114 414.5 395 59.5
Lsat_1_v5_gn_5_148741 Lactuca sativa HOM05D003961 ORTHO05D004528 2.1e-113 413.3 392 59.4
Manes.03G179600 Manihot esculenta HOM05D003961 ORTHO05D004528 2.1e-113 413.3 404 59.4
TWI73G0616 Tripterygium wilfordii HOM05D003961 ORTHO05D004528 2.7e-113 412.9 401 60.1
Actinidia40151 Actinidia chinensis HOM05D003961 ORTHO05D004528 4.6e-113 412.1 393 60.3
Ca_10910_v3 Cicer arietinum L. HOM05D003961 ORTHO05D004528 6.0e-113 411.8 399 57.9
Lj5g0020823 Lotus japonicus HOM05D003961 ORTHO05D004528 1.0e-112 411.0 397 58.9
Actinidia08494 Actinidia chinensis HOM05D003961 ORTHO05D004528 1.8e-112 410.2 398 60.3
AUR62033612 Chenopodium quinoa HOM05D003961 ORTHO05D004528 2.3e-112 409.8 409 57.9
Duzib212G0915 Durio zibethinus HOM05D003961 ORTHO05D004528 3.9e-112 409.1 397 59.4
Psat6g208040 Pisum sativum HOM05D003961 ORTHO05D004528 3.9e-112 409.1 400 59.0
HanXRQChr10g0296391 Helianthus annuus HOM05D003961 ORTHO05D004528 6.7e-112 408.3 396 57.8
DCAR_002388 Daucus carota HOM05D003961 ORTHO05D004528 8.7e-112 407.9 398 59.3
Sc13g0004340 Simmondsia chinensis HOM05D003961 ORTHO05D004528 4.3e-111 405.6 420 56.9
CSS0032523 Camellia sinensis var. sinensis HOM05D003961 ORTHO05D004528 5.7e-111 405.2 403 58.8
TAR633G2096 Trochodendron aralioides HOM05D003961 ORTHO05D004528 5.7e-111 405.2 402 58.2
Duzib151G0309 Durio zibethinus HOM05D003961 ORTHO05D004528 1.3e-110 404.1 398 58.3
Lalb_Chr05g0210961 Lupinus albus HOM05D003961 ORTHO05D004528 5.3e-109 398.7 391 59.1
arahy.Tifrunner.gnm1.ann1.K10YKQ Arachis hypogaea HOM05D003961 ORTHO05D004528 9.0e-109 397.9 398 58.3
MELO3C006535.2 Cucumis melo HOM05D003961 ORTHO05D004528 1.2e-108 397.5 408 56.1
Medtr1g104540 Medicago truncatula HOM05D003961 ORTHO05D004528 2.0e-108 396.7 398 58.3
PSO832G1325 Papaver somniferum HOM05D003961 ORTHO05D004528 2.6e-108 396.4 406 55.9
CsaV3_3G013370 Cucumis sativus L. HOM05D003961 ORTHO05D004528 3.4e-108 396.0 408 56.1
arahy.Tifrunner.gnm1.ann1.X5EF0Z Arachis hypogaea HOM05D003961 ORTHO05D004528 5.9e-108 395.2 398 58.0
Nn4g26303 Nelumbo nucifera HOM05D003961 ORTHO05D004528 7.6e-108 394.8 407 58.0
PSO210G4025 Papaver somniferum HOM05D003961 ORTHO05D004528 5.0e-107 392.1 407 55.8
Sed0004334 Sechium edule HOM05D003961 ORTHO05D004528 4.6e-105 385.6 404 55.7
THA.LOC104826163 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 1.8e-104 383.6 394 56.9
Haze_00908 Corylus avellana HOM05D003961 ORTHO05D004528 1.1e-103 380.9 371 60.4
SalBow2G2398 Salvia bowleyana HOM05D003961 ORTHO05D004528 3.7e-102 375.9 338 64.8
Sp1g04240 Schrenkiella parvula HOM05D003961 ORTHO05D004528 4.8e-102 375.6 396 55.3
Thhalv10007749m.g Eutrema salsugineum HOM05D003961 ORTHO05D004528 3.1e-101 372.9 397 54.9
Aa31LG1G19250 Aethionema arabicum HOM05D003961 ORTHO05D004528 5.3e-101 372.1 397 54.4
MBI04_g20819_MAGBIO Magnolia biondii HOM05D003961 ORTHO05D004528 5.3e-101 372.1 397 55.7
Sed0007259 Sechium edule HOM05D003961 ORTHO05D004528 1.2e-100 370.9 408 53.7
BolC8t52703H Brassica oleracea HOM05D003961 ORTHO05D004528 3.4e-100 369.4 396 54.5
AL1G15190 Arabidopsis lyrata HOM05D003961 ORTHO05D004528 1.7e-99 367.1 398 55.0
BcaC07g42133 Brassica carinata HOM05D003961 ORTHO05D004528 2.2e-99 366.7 397 54.4
C08p51740 Brassica napus HOM05D003961 ORTHO05D004528 2.2e-99 366.7 397 54.4
Hund12136 Selenicereus undatus HOM05D003961 ORTHO05D004528 2.2e-99 366.7 403 56.3
AT1G05370 Arabidopsis thaliana HOM05D003961 ORTHO05D004528 3.8e-99 365.9 398 54.8
A09p67460 Brassica napus HOM05D003961 ORTHO05D004528 1.1e-98 364.4 397 54.2
A10p04070 Brassica napus HOM05D003961 ORTHO05D004528 1.1e-98 364.4 398 54.0
BraA09t42074Z Brassica rapa HOM05D003961 ORTHO05D004528 1.1e-98 364.4 397 54.2
BraA10t42678Z Brassica rapa HOM05D003961 ORTHO05D004528 1.1e-98 364.4 398 54.0
CARHR004880 Cardamine hirsuta HOM05D003961 ORTHO05D004528 1.9e-98 363.6 396 54.0
BolC5t29146H Brassica oleracea HOM05D003961 ORTHO05D004528 4.2e-98 362.5 399 53.9
Nitab4.5_0000321g0090 Nicotiana tabacum HOM05D003961 ORTHO05D004528 5.5e-98 362.1 394 55.3
C05p03710 Brassica napus HOM05D003961 ORTHO05D004528 4.6e-97 359.0 398 53.5
Carub.0001s0471 Capsella rubella HOM05D003961 ORTHO05D004528 7.9e-97 358.2 402 54.5
Atru.chr4.2476 Acer truncatum HOM05D003961 ORTHO05D004528 2.0e-95 353.6 398 53.0
THA.LOC104801547 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 8.2e-94 348.2 398 53.3
Os03g0219100 Oryza sativa ssp. japonica HOM05D003961 ORTHO05D004528 1.5e-92 344.0 391 52.4
THA.LOC104808538 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 1.0e-91 341.3 398 51.8
unitig_748.g8543 Utricularia gibba HOM05D003961 ORTHO05D004528 4.2e-90 335.9 392 51.5
Ah.13g073820 Amaranthus hybridus HOM05D003961 ORTHO05D004528 9.4e-90 334.7 412 51.9
Zm00001eb008830 Zea mays HOM05D003961 ORTHO05D004528 1.2e-89 334.3 392 50.5
MD16G1192700 Malus domestica HOM05D003961 ORTHO05D004528 1.4e-88 330.9 336 57.7
Oeu031235.1 Olea europaea HOM05D003961 ORTHO05D004528 6.7e-88 328.6 286 63.3
unitig_748.g8337 Utricularia gibba HOM05D003961 ORTHO05D004528 1.5e-87 327.4 394 49.7
TPR.G5481 Trifolium pratense HOM05D003961 ORTHO05D004528 2.6e-87 326.6 398 51.0
HPP92_007926 Vanilla planifolia HOM05D003961 ORTHO05D004528 3.3e-87 326.2 395 51.1
AT3G22410 Arabidopsis thaliana HOM05D003961 ORTHO05D004528 2.0e-84 317.0 398 48.7
CSS0001637 Camellia sinensis var. sinensis HOM05D003961 ORTHO05D004528 1.3e-83 314.3 296 61.5
Carub.0003s2257 Capsella rubella HOM05D003961 ORTHO05D004528 3.8e-83 312.8 400 49.5
Thhalv10020858m.g Eutrema salsugineum HOM05D003961 ORTHO05D004528 1.1e-82 311.2 395 48.4
AL3G36680 Arabidopsis lyrata HOM05D003961 ORTHO05D004528 1.9e-82 310.5 398 48.5
CARHR098300 Cardamine hirsuta HOM05D003961 ORTHO05D004528 2.1e-81 307.0 399 48.1
Zm00001eb400000 Zea mays HOM05D003961 ORTHO05D004528 2.1e-81 307.0 404 49.5
A05p26360 Brassica napus HOM05D003961 ORTHO05D004528 1.4e-80 304.3 394 47.2
BraA05t21511Z Brassica rapa HOM05D003961 ORTHO05D004528 1.4e-80 304.3 394 47.2
BcaC05g28076 Brassica carinata HOM05D003961 ORTHO05D004528 5.2e-80 302.4 394 47.0
C05p40990 Brassica napus HOM05D003961 ORTHO05D004528 5.2e-80 302.4 394 47.0
BolC5t32840H Brassica oleracea HOM05D003961 ORTHO05D004528 5.2e-80 302.4 394 47.0
Sc19g0004200 Simmondsia chinensis HOM05D003961 ORTHO05D004528 6.7e-80 302.0 405 46.7
Rhsim04G0203000 Rhododendron simsii HOM05D003961 ORTHO05D004528 6.3e-78 295.4 408 48.5
BcaB04g20519 Brassica carinata HOM05D003961 ORTHO05D004528 4.1e-77 292.7 385 47.3
BcaB06g26342 Brassica carinata HOM05D003961 ORTHO05D004528 2.0e-76 290.4 389 45.0
Nitab4.5_0004283g0010 Nicotiana tabacum HOM05D003961 ORTHO05D004528 2.0e-76 290.4 279 59.9
Sp3g20170 Schrenkiella parvula HOM05D003961 ORTHO05D004528 3.5e-76 289.7 396 45.5
A01p32690 Brassica napus HOM05D003961 ORTHO05D004528 1.7e-75 287.3 401 45.1
BraA01t03397Z Brassica rapa HOM05D003961 ORTHO05D004528 2.9e-75 286.6 400 45.2
ClCG05G005190 Citrullus lanatus HOM05D003961 ORTHO05D004528 5.0e-75 285.8 401 45.1
C01p41880 Brassica napus HOM05D003961 ORTHO05D004528 1.9e-74 283.9 398 45.0
BcaC09g49172 Brassica carinata HOM05D003961 ORTHO05D004528 1.0e-72 278.1 398 44.5
BolC1t04141H Brassica oleracea HOM05D003961 ORTHO05D004528 1.0e-72 278.1 398 44.5
ATR0737G092 Amborella trichopoda HOM05D003961 ORTHO05D004528 1.4e-72 277.7 398 44.7
Migut.N00179 Erythranthe guttata HOM05D003961 ORTHO05D004528 3.0e-72 276.6 307 53.7
Aa31LG8G8940 Aethionema arabicum HOM05D003961 ORTHO05D004528 2.0e-71 273.9 398 44.0
Phvul.002G046000 Phaseolus vulgaris HOM05D003961 ORTHO05D004528 1.2e-68 264.6 396 45.2
VMungo1215G0448 Vigna mungo HOM05D003961 ORTHO05D004528 4.7e-65 252.7 367 45.2
CDE10G1225 Ceratophyllum demersum HOM05D003961 ORTHO05D004528 7.5e-63 245.4 390 40.5
SHI00429 Sapria himalayana HOM05D003961 ORTHO05D004528 1.6e-60 237.7 373 45.0
ECA234G0180 Erigeron canadensis HOM05D003961 ORTHO05D004528 1.7e-54 217.6 222 55.4
SalBow3G0892 Salvia bowleyana HOM05D003961 ORTHO05D004528 1.9e-50 204.1 220 54.1
Ah.04g154530 Amaranthus hybridus HOM05D003961 ORTHO05D004528 6.4e-46 189.1 241 50.6
Actinidia36962 Actinidia chinensis HOM05D003961 ORTHO05D004528 1.0e-43 181.8 157 62.4
CDE10G0336 Ceratophyllum demersum HOM05D003961 ORTHO05D004528 7.3e-42 175.6 230 45.2
unitig_41.g31645 Utricularia gibba HOM05D003961 ORTHO05D004528 2.8e-41 173.7 368 37.5
Pp3c16_18230 Physcomitrium patens HOM05D003961 ORTHO05D004528 2.6e-31 140.6 405 30.4
Hma1.2p1_0745F.1_g211900 Hydrangea macrophylla HOM05D003961 ORTHO05D004528 1.1e-29 135.2 88 72.7
Pp3c25_7490 Physcomitrium patens HOM05D003961 ORTHO05D004528 5.4e-29 132.9 394 27.9
Pp3c6_16090 Physcomitrium patens HOM05D003961 ORTHO05D004528 2.7e-28 130.6 400 27.5
DCAR_027211 Daucus carota HOM05D003961 ORTHO05D004528 2.3e-27 127.5 107 63.6
arahy.Tifrunner.gnm1.ann1.9RDP1W Arachis hypogaea HOM05D003961 ORTHO05D007352 3.3e-26 123.6 111 61.3
Pp3c1_24930 Physcomitrium patens HOM05D003961 ORTHO05D004528 1.2e-25 121.7 423 25.3
Mapoly0016s0069 Marchantia polymorpha HOM05D003961 ORTHO05D004528 1.6e-25 121.3 373 30.3
SMO347G0581 Selaginella moellendorffii HOM05D003961 ORTHO05D004528 2.0e-23 114.4 393 27.5
AagrBONN_evm.TU.Sc2ySwM_228.2611 Anthoceros agrestis HOM05D003961 ORTHO05D004528 3.2e-21 107.1 265 32.1
Cre12.g503950 Chlamydomonas reinhardtii HOM05D001180 ORTHO05D001055 1.8e-11 74.7 193 26.4
TAR633G0076 Trochodendron aralioides HOM05D000441 ORTHO05D414409 4.3e-10 70.1 44 65.9
Actinidia36963 Actinidia chinensis HOM05D003961 ORTHO05D055364 1.4e-08 65.1 37 78.4
Psat7g039560 Pisum sativum HOM05D001471 ORTHO05D001325 3.4e-07 60.5 156 25.6
Ah.11g046950 Amaranthus hybridus HOM05D001471 ORTHO05D001325 5.8e-07 59.7 170 24.7
Dinv23232 Davidia involucrata HOM05D001471 ORTHO05D001325 5.8e-07 59.7 175 24.0
Medtr3g098530 Medicago truncatula HOM05D001471 ORTHO05D001325 5.8e-07 59.7 175 24.6
CSS0046117 Camellia sinensis var. sinensis HOM05D001471 ORTHO05D001325 2.2e-06 57.8 168 25.0
Phvul.002G281200 Phaseolus vulgaris HOM05D001471 ORTHO05D001325 2.9e-06 57.4 175 26.3
TPR.G12741 Trifolium pratense HOM05D001471 ORTHO05D001325 3.8e-06 57.0 156 26.3
Manes.14G044000 Manihot esculenta HOM05D001471 ORTHO05D001325 4.9e-06 56.6 175 24.0
Manes.08G100800 Manihot esculenta HOM05D001471 ORTHO05D001325 8.4e-06 55.8 155 27.1


User provided reference genes

Program Settings