Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold39G15232 Striga asiatica HOM05D002310 ORTHO05D002326 8.3e-90 333.6 156 100.0
SGA_v2.0_scaffold257G45713 Striga asiatica HOM05D002310 ORTHO05D002326 9.3e-41 170.6 98 82.7
Migut.G00339 Erythranthe guttata HOM05D002310 ORTHO05D002326 4.5e-35 151.8 98 74.5
SalBow2G3435 Salvia bowleyana HOM05D002310 ORTHO05D002326 5.9e-35 151.4 98 73.5
MSTRG.4031 Avicennia marina HOM05D002310 ORTHO05D002326 2.2e-34 149.4 97 76.3
Oeu011619.2 Olea europaea HOM05D002310 ORTHO05D002326 2.1e-32 142.9 98 68.4
Oeu020078.1 Olea europaea HOM05D002310 ORTHO05D002326 2.1e-32 142.9 98 69.4
Sc15g0003290 Simmondsia chinensis HOM05D002310 ORTHO05D002326 1.1e-28 130.6 97 62.9
GSVIVG01017976001 Vitis vinifera HOM05D002310 ORTHO05D002326 1.4e-28 130.2 97 62.9
Lj5g0003431 Lotus japonicus HOM05D002310 ORTHO05D002326 9.1e-28 127.5 103 59.2
Dinv44536 Davidia involucrata HOM05D002310 ORTHO05D002326 1.2e-27 127.1 97 61.9
Nn1g02320 Nelumbo nucifera HOM05D002310 ORTHO05D002326 1.2e-27 127.1 97 60.8
Thecc.04G232000 Theobroma cacao HOM05D002310 ORTHO05D002326 2.6e-27 125.9 97 58.8
Duzib212G0102 Durio zibethinus HOM05D002310 ORTHO05D002326 3.4e-27 125.6 97 57.7
AT3G22430 Arabidopsis thaliana HOM05D002310 ORTHO05D002326 5.9e-27 124.8 97 59.8
Nn4g26323 Nelumbo nucifera HOM05D002310 ORTHO05D002326 5.9e-27 124.8 97 59.8
Cpa.g.sc58.107 Carica papaya HOM05D002310 ORTHO05D002326 7.7e-27 124.4 97 57.7
Ciclev10005817m.g Citrus clementina HOM05D002310 ORTHO05D002326 1.0e-26 124.0 97 58.8
MD13G1193000 Malus domestica HOM05D002310 ORTHO05D002326 2.2e-26 122.9 97 56.7
QL06p002477 Quercus lobata HOM05D002310 ORTHO05D002326 2.2e-26 122.9 97 58.8
BcaC05g28069 Brassica carinata HOM05D002310 ORTHO05D002326 2.9e-26 122.5 97 59.8
A05p26290 Brassica napus HOM05D002310 ORTHO05D002326 2.9e-26 122.5 97 59.8
C05p40910 Brassica napus HOM05D002310 ORTHO05D002326 2.9e-26 122.5 97 59.8
BolC5t32833H Brassica oleracea HOM05D002310 ORTHO05D002326 2.9e-26 122.5 97 59.8
BraA05t21506Z Brassica rapa HOM05D002310 ORTHO05D002326 2.9e-26 122.5 97 59.8
FvH4_4g15540 Fragaria vesca HOM05D002310 ORTHO05D002326 2.9e-26 122.5 103 57.3
FAN12G2432 Fragaria x ananassa HOM05D002310 ORTHO05D002326 2.9e-26 122.5 103 57.3
COL.COLO4_21478 Corchorus olitorius HOM05D002310 ORTHO05D002326 5.0e-26 121.7 97 56.7
Sed0017994 Sechium edule HOM05D002310 ORTHO05D002326 5.0e-26 121.7 97 58.8
Atru.ctg752_3.77 Acer truncatum HOM05D002310 ORTHO05D002326 6.5e-26 121.3 97 56.7
AL3G36740 Arabidopsis lyrata HOM05D002310 ORTHO05D002326 6.5e-26 121.3 97 57.7
CiPaw.01G166000 Carya illinoinensis HOM05D002310 ORTHO05D002326 6.5e-26 121.3 97 56.7
Prupe.1G013600 Prunus persica HOM05D002310 ORTHO05D002326 6.5e-26 121.3 97 57.7
FAN07G0096 Fragaria x ananassa HOM05D002310 ORTHO05D002326 8.5e-26 120.9 103 56.3
FAN17G0990 Fragaria x ananassa HOM05D002310 ORTHO05D002326 8.5e-26 120.9 103 56.3
Gohir.A09G056100 Gossypium hirsutum HOM05D002310 ORTHO05D002326 8.5e-26 120.9 97 55.7
Gohir.D09G055300 Gossypium hirsutum HOM05D002310 ORTHO05D002326 8.5e-26 120.9 97 55.7
Gorai.006G068300 Gossypium raimondii HOM05D002310 ORTHO05D002326 8.5e-26 120.9 97 55.7
Hma1.2p1_1344F.1_g277120 Hydrangea macrophylla HOM05D002310 ORTHO05D002326 1.1e-25 120.6 97 57.7
RcHm_v2.0_Chr4g0416221 Rosa chinensis HOM05D002310 ORTHO05D002326 1.1e-25 120.6 103 56.3
TWI09G0856 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 1.1e-25 120.6 97 56.7
Eucgr.H03481 Eucalyptus grandis HOM05D002310 ORTHO05D002326 1.9e-25 119.8 97 54.6
FAN22G1262 Fragaria x ananassa HOM05D002310 ORTHO05D002326 1.9e-25 119.8 103 56.3
TWI73G1015 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 1.9e-25 119.8 97 57.7
Carub.0003s2261 Capsella rubella HOM05D002310 ORTHO05D002326 2.5e-25 119.4 97 57.7
CAN.G490.5 Capsicum annuum HOM05D002310 ORTHO05D002326 2.5e-25 119.4 97 57.7
Cfa015645 Carpinus fangiana HOM05D002310 ORTHO05D002326 2.5e-25 119.4 97 55.7
MELO3C012650.2 Cucumis melo HOM05D002310 ORTHO05D002326 2.5e-25 119.4 97 54.6
MD16G1193900 Malus domestica HOM05D002310 ORTHO05D002326 2.5e-25 119.4 97 56.7
Solyc09g076040.3 Solanum lycopersicum HOM05D002310 ORTHO05D002326 2.5e-25 119.4 97 57.7
Sopen09g030870 Solanum pennellii HOM05D002310 ORTHO05D002326 2.5e-25 119.4 97 57.7
VMungo0720G0449 Vigna mungo HOM05D002310 ORTHO05D002326 2.5e-25 119.4 97 57.7
CANSAT78G0613 Cannabis sativa HOM05D002310 ORTHO05D002326 3.2e-25 119.0 97 54.6
PGSC0003DMG400030084 Solanum tuberosum HOM05D002310 ORTHO05D002326 4.2e-25 118.6 97 56.7
arahy.Tifrunner.gnm1.ann1.5P4QKH Arachis hypogaea HOM05D002310 ORTHO05D002326 5.5e-25 118.2 97 56.7
arahy.Tifrunner.gnm1.ann1.Q8TT5G Arachis hypogaea HOM05D002310 ORTHO05D002326 5.5e-25 118.2 97 56.7
Duzib151G0125 Durio zibethinus HOM05D002310 ORTHO05D002326 7.2e-25 117.9 97 54.6
Peaxi162Scf00092g01019 Petunia axillaris HOM05D002310 ORTHO05D002326 7.2e-25 117.9 97 55.7
Sp3g20200 Schrenkiella parvula HOM05D002310 ORTHO05D002326 7.2e-25 117.9 97 55.7
THA.LOC104808546 Tarenaya hassleriana HOM05D002310 ORTHO05D002326 7.2e-25 117.9 97 56.7
CSS0035785 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 9.4e-25 117.5 97 55.7
CARHR098340 Cardamine hirsuta HOM05D002310 ORTHO05D002326 9.4e-25 117.5 97 56.7
ClCG06G006230 Citrullus lanatus HOM05D002310 ORTHO05D002326 9.4e-25 117.5 97 53.6
Lalb_Chr02g0140601 Lupinus albus HOM05D002310 ORTHO05D002326 9.4e-25 117.5 97 55.7
PSO832G1500 Papaver somniferum HOM05D002310 ORTHO05D002326 9.4e-25 117.5 97 54.6
CsaV3_7G022500 Cucumis sativus L. HOM05D002310 ORTHO05D002326 1.6e-24 116.7 97 53.6
CDE02G0428 Ceratophyllum demersum HOM05D002310 ORTHO05D002326 2.1e-24 116.3 97 56.7
BcaB06g26348 Brassica carinata HOM05D002310 ORTHO05D002326 2.7e-24 115.9 97 56.7
Aqoxy2G03391 Aquilegia oxysepala HOM05D002310 ORTHO05D002326 3.6e-24 115.5 97 56.7
AUR62033632 Chenopodium quinoa HOM05D002310 ORTHO05D002326 3.6e-24 115.5 97 52.6
Cc03_g03780 Coffea canephora HOM05D002310 ORTHO05D002326 3.6e-24 115.5 97 54.6
Actinidia23510 Actinidia chinensis HOM05D002310 ORTHO05D002326 4.7e-24 115.2 97 56.7
EL10As3g23290 Beta vulgaris HOM05D002310 ORTHO05D002326 4.7e-24 115.2 97 51.5
AUR62034749 Chenopodium quinoa HOM05D002310 ORTHO05D002326 4.7e-24 115.2 97 52.6
Glyma.10G248100 Glycine max HOM05D002310 ORTHO05D002326 4.7e-24 115.2 97 55.7
Phvul.007G057400 Phaseolus vulgaris HOM05D002310 ORTHO05D002326 4.7e-24 115.2 97 55.7
Ah.04g157080 Amaranthus hybridus HOM05D002310 ORTHO05D002326 6.1e-24 114.8 97 54.6
PSO210G3829 Papaver somniferum HOM05D002310 ORTHO05D002326 6.1e-24 114.8 97 53.6
Potri.010G087400 Populus trichocarpa HOM05D002310 ORTHO05D002326 6.1e-24 114.8 97 58.8
CSS0045550 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 7.9e-24 114.4 97 55.7
Sabra10G0055400 Salix brachista HOM05D002310 ORTHO05D002326 7.9e-24 114.4 97 57.7
Thhalv10020450m.g Eutrema salsugineum HOM05D002310 ORTHO05D002326 2.3e-23 112.8 97 54.6
PGR004G1373 Punica granatum HOM05D002310 ORTHO05D002326 2.3e-23 112.8 97 52.6
Dinv13995 Davidia involucrata HOM05D002310 ORTHO05D002326 3.0e-23 112.5 97 55.7
CDE05G2383 Ceratophyllum demersum HOM05D002310 ORTHO05D002326 3.9e-23 112.1 97 53.6
Ca_10897_v3 Cicer arietinum L. HOM05D002310 ORTHO05D002326 5.1e-23 111.7 97 52.6
Nitab4.5_0004258g0040 Nicotiana tabacum HOM05D002310 ORTHO05D002326 5.1e-23 111.7 97 56.7
Manes.03G178600 Manihot esculenta HOM05D002310 ORTHO05D002326 6.7e-23 111.3 97 55.7
Medtr1g103730 Medicago truncatula HOM05D002310 ORTHO05D002326 1.1e-22 110.5 97 50.5
Glyma.20G146000 Glycine max HOM05D002310 ORTHO05D002326 1.5e-22 110.2 97 53.6
ECA240G3014 Erigeron canadensis HOM05D002310 ORTHO05D002326 2.6e-22 109.4 97 51.5
Lsat_1_v5_gn_7_67261 Lactuca sativa HOM05D002310 ORTHO05D002326 2.6e-22 109.4 97 51.5
Lj6A608G62 Lonicera japonica HOM05D002310 ORTHO05D002326 2.6e-22 109.4 97 54.6
ATR0697G286 Amborella trichopoda HOM05D002310 ORTHO05D002326 3.3e-22 109.0 97 53.6
CiPaw.02G097300 Carya illinoinensis HOM05D002310 ORTHO05D002326 3.3e-22 109.0 97 51.5
TAR362G0728 Trochodendron aralioides HOM05D002310 ORTHO05D002326 4.4e-22 108.6 95 50.5
TPR.G5506 Trifolium pratense HOM05D002310 ORTHO05D002326 9.7e-22 107.5 97 50.5
Aa31LG8G9000 Aethionema arabicum HOM05D002310 ORTHO05D002326 1.7e-21 106.7 97 50.5
Potri.008G152900 Populus trichocarpa HOM05D002310 ORTHO05D002326 2.8e-21 105.9 97 53.6
DCAR_027217 Daucus carota HOM05D002310 ORTHO05D002326 8.2e-21 104.4 99 46.5
HanXRQChr05g0145901 Helianthus annuus HOM05D002310 ORTHO05D002326 8.2e-21 104.4 97 50.5
Psat6g207480 Pisum sativum HOM05D002310 ORTHO05D002326 8.2e-21 104.4 99 49.5
Sc19g0004150 Simmondsia chinensis HOM05D002310 ORTHO05D002326 1.4e-20 103.6 97 49.5
Rhsim04G0202200 Rhododendron simsii HOM05D002310 ORTHO05D002326 1.8e-20 103.2 97 50.5
Sabra08G0116500 Salix brachista HOM05D002310 ORTHO05D002326 2.4e-20 102.8 97 51.5
Ah.13g072700 Amaranthus hybridus HOM05D000193 ORTHO05D002695 4.1e-20 102.1 128 39.8
Zm00001eb403270 Zea mays HOM05D002310 ORTHO05D002326 2.9e-18 95.9 97 47.4
TAR362G0281 Trochodendron aralioides HOM05D002310 ORTHO05D002326 1.4e-17 93.6 93 44.1
TAR365G0854 Trochodendron aralioides HOM05D002310 ORTHO05D002326 7.2e-17 91.3 96 50.0
TAR362G0961 Trochodendron aralioides HOM05D002310 ORTHO05D002326 1.2e-16 90.5 93 45.2
SEGI_23348 Sequoiadendron giganteum HOM05D002310 ORTHO05D002326 6.1e-16 88.2 98 45.9
Os03g0159200 Oryza sativa ssp. japonica HOM05D002310 ORTHO05D002326 5.2e-15 85.1 97 40.2
TAR636G0317 Trochodendron aralioides HOM05D002310 ORTHO05D002326 8.8e-15 84.3 92 46.7
Lj3P735T17 Lonicera japonica HOM05D002310 ORTHO05D002326 1.5e-14 83.6 89 43.8
SEGI_09221 Sequoiadendron giganteum HOM05D002310 ORTHO05D002326 7.4e-14 81.3 98 42.9
SEGI_25454 Sequoiadendron giganteum HOM05D002310 ORTHO05D002326 7.0e-12 74.7 97 40.2
Zm00001eb200440 Zea mays HOM05D002310 ORTHO05D002326 2.1e-08 63.2 82 46.3
CAN.G644.19 Capsicum annuum HOM05D002310 ORTHO05D002326 1.4e-07 60.5 84 42.9
PGSC0003DMG400026527 Solanum tuberosum HOM05D002310 ORTHO05D002326 5.2e-07 58.5 84 41.7
Solyc11g066990.2 Solanum lycopersicum HOM05D002310 ORTHO05D002326 8.8e-07 57.8 84 40.5
Sopen11g026700 Solanum pennellii HOM05D002310 ORTHO05D002326 1.5e-06 57.0 84 40.5


User provided reference genes

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