Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 8.3e-163 577.0 301 100.0
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 8.8e-112 407.5 317 68.1
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 2.0e-100 369.8 321 62.0
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.3e-99 367.1 328 58.8
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.3e-99 367.1 328 59.5
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.7e-99 366.7 328 58.8
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 1.4e-98 363.6 338 56.2
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 7.2e-98 361.3 279 67.4
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 2.7e-97 359.4 330 59.4
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.8e-96 356.7 218 79.8
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 8.8e-96 354.4 328 57.6
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.3e-94 350.5 318 58.2
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 2.2e-94 349.7 328 57.0
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 2.8e-94 349.4 329 57.4
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.1e-93 347.4 265 64.9
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 1.4e-93 347.1 328 55.5
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 2.0e-92 343.2 328 56.1
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 1.0e-91 340.9 321 56.1
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 8.5e-91 337.8 322 54.0
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 8.5e-91 337.8 328 54.6
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.1e-90 337.4 322 55.3
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.5e-90 337.0 322 53.7
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.5e-90 337.0 327 55.0
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.9e-90 336.7 322 53.7
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 4.2e-90 335.5 321 54.5
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.2e-90 335.5 322 53.7
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 4.2e-90 335.5 328 56.1
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 5.5e-90 335.1 328 56.4
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.7e-89 332.8 333 56.2
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 2.7e-89 332.8 327 56.0
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 4.7e-89 332.0 325 53.2
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 5.2e-88 328.6 331 55.6
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 8.8e-88 327.8 321 53.3
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.5e-87 327.0 335 54.0
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 5.7e-87 325.1 328 53.0
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 9.7e-87 324.3 327 56.6
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.3e-86 323.9 325 53.5
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 2.2e-86 323.2 324 54.0
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 2.8e-86 322.8 283 58.0
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 3.7e-86 322.4 325 53.2
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 8.2e-86 321.2 328 51.5
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 8.2e-86 321.2 327 52.3
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 8.2e-86 321.2 341 53.1
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 1.4e-85 320.5 325 52.6
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.8e-85 320.1 319 56.4
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 3.1e-85 319.3 317 52.7
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 1.6e-84 317.0 312 54.5
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.0e-84 316.6 278 59.7
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.7e-84 316.2 290 57.6
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 3.5e-84 315.8 329 51.7
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 4.5e-84 315.5 323 52.6
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 7.7e-84 314.7 327 54.4
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.0e-83 314.3 329 52.0
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 1.0e-83 314.3 329 54.1
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.7e-83 313.5 329 53.8
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.7e-83 313.5 288 56.6
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.5e-82 310.5 331 50.2
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.5e-82 310.5 320 52.2
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.5e-82 310.5 324 52.2
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.6e-81 307.0 262 58.8
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.6e-81 307.0 329 51.7
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.6e-81 307.0 330 52.7
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 2.7e-81 306.2 326 52.5
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 3.6e-81 305.8 335 51.6
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 6.1e-81 305.1 329 51.4
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 6.1e-81 305.1 320 52.8
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.8e-80 303.5 334 50.9
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 6.8e-80 301.6 356 48.9
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 8.8e-80 301.2 322 51.2
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 1.2e-79 300.8 277 57.4
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 2.0e-79 300.1 330 51.5
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.6e-79 299.7 329 50.2
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 5.7e-79 298.5 329 48.0
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 5.7e-79 298.5 320 53.4
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 7.5e-79 298.1 324 50.6
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 9.8e-79 297.7 329 48.0
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 9.8e-79 297.7 331 50.8
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 9.8e-79 297.7 310 54.2
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 6.3e-78 295.0 332 49.4
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.1e-77 294.3 277 55.2
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 1.8e-77 293.5 335 50.7
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 1.8e-77 293.5 249 61.8
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 3.1e-77 292.7 334 47.6
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.1e-77 292.4 295 55.3
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.5e-76 289.3 322 47.5
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 3.5e-76 289.3 279 58.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 7.7e-76 288.1 317 48.3
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 2.9e-75 286.2 331 49.8
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 2.5e-74 283.1 329 49.5
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.2e-73 280.8 301 52.5
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 4.7e-73 278.9 279 55.2
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.4e-72 277.3 218 63.8
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.3e-72 276.6 218 63.3
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 8.9e-72 274.6 330 47.6
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 4.4e-71 272.3 214 63.1
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.0e-69 265.0 200 63.5
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 4.5e-68 262.3 342 46.8
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 1.3e-67 260.8 320 46.9
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 8.6e-67 258.1 342 45.9
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 3.3e-66 256.1 342 46.2
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 7.5e-63 245.0 253 52.2
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 7.5e-63 245.0 270 48.9
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 6.4e-62 241.9 277 50.5
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 5.4e-61 238.8 306 46.7
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.0e-61 238.4 273 47.3
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.6e-60 237.3 292 46.9
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.7e-60 236.5 231 55.0
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 3.5e-60 236.1 278 47.1
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.7e-57 225.7 229 52.0
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 5.8e-55 218.8 268 44.8
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 2.9e-54 216.5 270 46.7
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 4.9e-54 215.7 218 52.8
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 4.9e-54 215.7 218 52.8
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.1e-53 214.5 173 64.2
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.0e-51 206.5 303 45.5
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 8.6e-51 204.9 247 43.7
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.9e-50 203.8 265 41.5
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 3.4e-47 193.0 275 40.4
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 5.4e-45 185.7 329 39.5
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 7.8e-44 181.8 240 43.3
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.3e-43 181.0 274 40.1
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 2.3e-43 180.3 125 65.6
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 2.1e-41 173.7 211 46.4
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 3.4e-39 166.4 134 62.7
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 5.8e-39 165.6 278 38.1
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.7e-38 164.1 179 51.4
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 3.2e-37 159.8 160 55.0
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 4.3e-34 149.4 216 42.1
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 9.6e-34 148.3 224 39.3
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 1.6e-33 147.5 150 52.0
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 2.4e-32 143.7 179 45.3
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 5.3e-32 142.5 152 48.7
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 6.9e-32 142.1 155 52.9
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 3.8e-30 136.3 80 80.0
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.6e-28 131.0 250 32.4
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.5e-28 129.8 198 40.9
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 5.6e-26 122.5 149 48.3
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 1.1e-24 118.2 140 46.4
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.6e-23 113.6 281 28.1
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 2.3e-19 100.5 178 30.9
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.1e-18 98.2 198 33.8
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 9.9e-15 85.1 68 64.7
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 1.1e-08 65.1 173 29.5
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 9.0e-08 62.0 31 87.1


User provided reference genes

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