Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 6.1e-227 790.4 384 100.0
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 3.7e-115 419.1 231 86.1
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 5.4e-114 415.2 237 81.0
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 1.7e-112 410.2 236 81.4
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 2.1e-110 403.3 236 79.2
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 3.6e-110 402.5 243 77.8
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 1.0e-109 401.0 236 80.5
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 2.3e-109 399.8 237 78.5
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 2.3e-109 399.8 236 79.2
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 4.0e-109 399.1 236 79.2
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 4.0e-109 399.1 236 80.5
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 5.2e-109 398.7 252 76.2
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 8.8e-109 397.9 250 75.6
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 8.8e-109 397.9 236 78.8
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.2e-108 397.5 236 78.8
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.2e-108 397.5 236 79.2
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 4.4e-108 395.6 235 79.1
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 5.7e-108 395.2 236 78.8
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 7.5e-108 394.8 236 79.2
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 9.8e-108 394.4 237 78.5
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 1.3e-107 394.0 236 77.5
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 2.8e-107 392.9 240 77.1
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 2.8e-107 392.9 236 78.4
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 8.3e-107 391.3 236 78.4
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 1.8e-106 390.2 237 78.9
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 2.4e-106 389.8 237 79.3
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 3.1e-106 389.4 236 77.5
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 3.1e-106 389.4 236 78.8
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 4.1e-106 389.0 236 78.4
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 9.2e-106 387.9 236 76.3
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 1.6e-105 387.1 236 77.5
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 1.6e-105 387.1 236 76.7
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 2.0e-105 386.7 236 77.1
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 2.7e-105 386.3 236 77.5
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 3.5e-105 386.0 236 76.3
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 3.5e-105 386.0 236 76.7
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 3.5e-105 386.0 236 77.1
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.3e-104 384.0 236 76.3
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.3e-104 383.3 231 78.4
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 3.8e-104 382.5 236 78.0
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 3.8e-104 382.5 231 78.4
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 5.0e-104 382.1 234 76.9
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 5.0e-104 382.1 236 75.4
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 5.0e-104 382.1 236 76.3
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 6.6e-104 381.7 236 77.5
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 1.5e-103 380.6 236 76.3
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.5e-103 380.6 236 76.3
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 1.5e-103 380.6 236 75.4
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.9e-103 380.2 231 77.9
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.9e-103 380.2 236 77.1
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.3e-103 379.4 236 75.8
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 5.6e-103 378.6 236 77.5
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 5.6e-103 378.6 236 79.2
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 5.6e-103 378.6 236 76.3
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 7.3e-103 378.3 236 73.3
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 9.5e-103 377.9 236 76.7
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.2e-102 377.5 236 77.1
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.6e-102 377.1 236 75.4
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 2.1e-102 376.7 236 77.1
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 2.1e-102 376.7 238 75.6
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 2.1e-102 376.7 236 74.2
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 2.8e-102 376.3 236 77.5
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 6.1e-102 375.2 236 74.2
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 6.1e-102 375.2 236 74.6
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 6.1e-102 375.2 236 75.4
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.8e-101 373.6 236 74.2
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 2.3e-101 373.2 236 75.4
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 3.0e-101 372.9 236 74.6
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 4.0e-101 372.5 236 73.7
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 4.0e-101 372.5 236 72.9
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 5.2e-101 372.1 236 74.2
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 5.2e-101 372.1 236 74.2
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 6.8e-101 371.7 236 73.3
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 6.8e-101 371.7 236 73.3
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 6.8e-101 371.7 236 73.3
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 6.8e-101 371.7 236 75.0
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 8.9e-101 371.3 236 73.3
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.0e-100 370.2 236 76.3
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 2.0e-100 370.2 236 76.3
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 2.6e-100 369.8 234 73.9
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 2.6e-100 369.8 236 75.8
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 3.4e-100 369.4 236 75.0
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 4.4e-100 369.0 244 72.1
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 7.5e-100 368.2 236 74.6
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 7.5e-100 368.2 236 76.3
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 8.3e-99 364.8 265 66.4
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 8.3e-99 364.8 236 72.5
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 8.3e-99 364.8 236 73.3
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 8.3e-99 364.8 236 74.6
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.0e-97 360.1 222 77.5
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.0e-96 357.8 230 77.0
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.0e-96 357.8 230 77.0
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 3.0e-96 356.3 206 80.6
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 2.1e-94 350.1 239 70.7
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 3.6e-94 349.4 251 68.9
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 1.8e-93 347.1 267 64.8
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 6.8e-93 345.1 235 67.7
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 1.7e-91 340.5 236 69.1
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 4.9e-91 339.0 236 68.6
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.6e-89 334.0 218 70.2
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 2.0e-89 333.6 218 70.6
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 2.5e-87 326.6 226 67.3
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 3.4e-84 316.2 222 67.1
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 8.6e-80 301.6 218 65.1
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 4.3e-79 299.3 243 58.4
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.8e-77 293.9 240 57.5
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.2e-76 291.2 160 85.0
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 1.9e-74 283.9 236 58.1
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 2.1e-70 270.4 374 42.2
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 2.1e-70 270.4 374 42.2
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 2.4e-66 256.9 225 59.1
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 7.8e-65 251.9 220 56.8
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 2.5e-63 246.9 240 48.3
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 1.4e-61 241.1 137 78.1
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 9.0e-61 238.4 137 77.4
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 2.0e-60 237.3 137 77.4
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.8e-56 224.2 129 76.0
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 4.3e-55 219.5 261 47.1
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 6.2e-54 215.7 137 69.3
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 6.2e-54 215.7 250 44.4
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 9.0e-53 211.8 135 74.8
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 3.8e-51 206.5 257 45.5
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 6.4e-51 205.7 102 89.2
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 1.8e-45 187.6 139 64.7
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 4.5e-44 183.0 99 82.8
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 1.9e-42 177.6 219 46.1
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 9.3e-42 175.3 113 66.4
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 2.2e-35 154.1 218 43.1
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 3.2e-34 150.2 205 38.5
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 1.3e-27 128.3 71 80.3
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 6.9e-21 105.9 92 58.7
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 1.2e-20 105.1 80 62.5
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.2e-19 100.9 75 65.3
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.9e-19 100.5 76 64.5
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 5.0e-19 99.8 76 61.8
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 6.1e-17 92.8 54 75.9
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.5e-15 88.2 85 55.3
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 4.4e-15 86.7 46 78.3
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 1.4e-13 81.6 57 66.7
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.6e-12 78.2 41 78.0
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.6e-12 78.2 41 78.0
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 2.6e-12 77.4 69 52.2
TWI81G0242 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.2e-10 70.5 109 33.9
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 2.7e-09 67.4 98 34.7
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 3.6e-09 67.0 102 37.3
PGR031G0166 Punica granatum HOM05D000155 ORTHO05D000022 1.4e-08 65.1 97 34.0
Thecc.10G094100 Theobroma cacao HOM05D000003 ORTHO05D000022 1.4e-08 65.1 94 33.0
Thecc.10G084500 Theobroma cacao HOM05D000003 ORTHO05D011148 1.2e-07 62.0 104 26.9
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 2.6e-07 60.8 95 37.9
TWI38G0333 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 2.6e-07 60.8 117 30.8
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 4.4e-07 60.1 64 53.1
Cpa.g.sc209.21 Carica papaya HOM05D037222 ORTHO05D010953 5.7e-07 59.7 85 36.5
QL04p014896 Quercus lobata HOM05D000003 ORTHO05D000022 5.7e-07 59.7 101 31.7
SGA_v2.0_scaffold232G43526 Striga asiatica HOM05D015157 ORTHO05D011148 2.2e-06 57.8 42 54.8
PSO170G5060 Papaver somniferum HOM05D007979 ORTHO05D008897 3.7e-06 57.0 82 36.6
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 3.7e-06 57.0 97 33.0
Thecc.06G023800 Theobroma cacao HOM05D000003 ORTHO05D000006 3.7e-06 57.0 98 30.6
Atru.chr7.622 Acer truncatum HOM05D000003 ORTHO05D000004 6.3e-06 56.2 89 29.2
QL08p061842 Quercus lobata HOM05D000003 ORTHO05D000004 6.3e-06 56.2 92 34.8
Atru.chr6.1170 Acer truncatum HOM05D000003 ORTHO05D000022 8.2e-06 55.8 101 31.7


User provided reference genes

Program Settings